Miyakogusa Predicted Gene

Lj5g3v2045000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2045000.1 Non Characterized Hit- tr|I3S5R5|I3S5R5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.06,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION
SUBUNIT (SOH1),Media,CUFF.56488.1
         (206 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g102540.1 | mediator of RNA polymerase II transcription su...   293   1e-79
Medtr1g102540.2 | mediator of RNA polymerase II transcription su...   276   1e-74
Medtr1g102540.3 | mediator of RNA polymerase II transcription su...   276   1e-74

>Medtr1g102540.1 | mediator of RNA polymerase II transcription
           subunit 31 | HC | chr1:46323049-46327447 | 20130731
          Length = 257

 Score =  293 bits (749), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/206 (69%), Positives = 152/206 (73%), Gaps = 2/206 (0%)

Query: 1   MASKTDGENSTDTTPSLPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 60
           MASKT+  +  DT PS PK+IYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE
Sbjct: 54  MASKTESGSPRDTPPSPPKSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDE 113

Query: 61  AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLERLQNANFRSAMAHPNNKELAHRQQFYFWK 120
           AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLE LQNANFR+AMAHP NKEL HRQQFYFWK
Sbjct: 114 AFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELTHRQQFYFWK 173

Query: 121 NYRNNRLKHILPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPM 180
           NYRNNRLKHILPR                                           PSPM
Sbjct: 174 NYRNNRLKHILPR--SLAEPSAALPAPASTQPQPPVPALPPVPATSVAVTTSSSQAPSPM 231

Query: 181 PYGIPPGSGLAKSDMRNPTVDRRRRK 206
           PYGIPPGSG+AK+DMRN + DRR+RK
Sbjct: 232 PYGIPPGSGIAKNDMRNTSADRRKRK 257


>Medtr1g102540.2 | mediator of RNA polymerase II transcription
           subunit 31 | HC | chr1:46323049-46327433 | 20130731
          Length = 198

 Score =  276 bits (706), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/189 (71%), Positives = 141/189 (74%), Gaps = 2/189 (1%)

Query: 18  PKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY 77
           PK+IYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY
Sbjct: 12  PKSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY 71

Query: 78  IKFIMYPHCLYFLERLQNANFRSAMAHPNNKELAHRQQFYFWKNYRNNRLKHILPRXXXX 137
           IKFIMYPHCLYFLE LQNANFR+AMAHP NKEL HRQQFYFWKNYRNNRLKHILPR    
Sbjct: 72  IKFIMYPHCLYFLELLQNANFRNAMAHPTNKELTHRQQFYFWKNYRNNRLKHILPR--SL 129

Query: 138 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPMPYGIPPGSGLAKSDMRN 197
                                                  PSPMPYGIPPGSG+AK+DMRN
Sbjct: 130 AEPSAALPAPASTQPQPPVPALPPVPATSVAVTTSSSQAPSPMPYGIPPGSGIAKNDMRN 189

Query: 198 PTVDRRRRK 206
            + DRR+RK
Sbjct: 190 TSADRRKRK 198


>Medtr1g102540.3 | mediator of RNA polymerase II transcription
           subunit 31 | HC | chr1:46323049-46327413 | 20130731
          Length = 198

 Score =  276 bits (706), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/189 (71%), Positives = 141/189 (74%), Gaps = 2/189 (1%)

Query: 18  PKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY 77
           PK+IYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY
Sbjct: 12  PKSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY 71

Query: 78  IKFIMYPHCLYFLERLQNANFRSAMAHPNNKELAHRQQFYFWKNYRNNRLKHILPRXXXX 137
           IKFIMYPHCLYFLE LQNANFR+AMAHP NKEL HRQQFYFWKNYRNNRLKHILPR    
Sbjct: 72  IKFIMYPHCLYFLELLQNANFRNAMAHPTNKELTHRQQFYFWKNYRNNRLKHILPR--SL 129

Query: 138 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPMPYGIPPGSGLAKSDMRN 197
                                                  PSPMPYGIPPGSG+AK+DMRN
Sbjct: 130 AEPSAALPAPASTQPQPPVPALPPVPATSVAVTTSSSQAPSPMPYGIPPGSGIAKNDMRN 189

Query: 198 PTVDRRRRK 206
            + DRR+RK
Sbjct: 190 TSADRRKRK 198