Miyakogusa Predicted Gene

Lj5g3v2044990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2044990.1 tr|F4KDC4|F4KDC4_ARATH Hydroxyproline-rich
glycoprotein family protein OS=Arabidopsis thaliana
GN=At,33.33,2e-16,DUF688,Protein of unknown function
DUF688,CUFF.56490.1
         (309 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g102510.1 | hydroxyproline-rich glycoprotein family protei...   288   4e-78

>Medtr1g102510.1 | hydroxyproline-rich glycoprotein family protein |
           HC | chr1:46311577-46310216 | 20130731
          Length = 262

 Score =  288 bits (737), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 178/316 (56%), Positives = 200/316 (63%), Gaps = 67/316 (21%)

Query: 3   QTKKHVREPPSVPFLWELMPGIPKKDWKPEASSSVCNHYLPKIPLKLIASVPFVWEEKPG 62
           + KKH+REPPS+PF+WE  PGIP KDWKP   SS C   LPK PLK IAS+PFVWEEKPG
Sbjct: 5   ERKKHIREPPSIPFIWETKPGIPIKDWKP-VDSSFCQ--LPKTPLKQIASIPFVWEEKPG 61

Query: 63  IPLPNFSHVSVDYVPPKPSTILFHVASSSGYSLASNYDYDYNNKQSSRDSQSITTNLDLE 122
           IPLPNFSHV                                       D     T+LDLE
Sbjct: 62  IPLPNFSHV---------------------------------------DENESITSLDLE 82

Query: 123 AFSFD------AAPSLLANCLVSSAKISNAIPLHEKSSSEHDCDQLETPSSPASSETDSD 176
           +FSFD      + PSLLA+CLVSS K+S AIPL +            TPSSPASSETDS 
Sbjct: 83  SFSFDTNESFNSVPSLLADCLVSSTKLSTAIPLQQ------------TPSSPASSETDSS 130

Query: 177 TSSYATGRSSPTGSAILECLFPLRTPTKSSFLERDGNSTKVLSLGALEQKGKDFGSEDCP 236
            SSY TGRSS TGSA LECLFPL  P KSSFLERD    + LS   +E KG DF +ED  
Sbjct: 131 ISSYETGRSSLTGSAFLECLFPL-FPPKSSFLERDIGYNEKLSSSLVELKGNDFENEDYT 189

Query: 237 SDMVRRPATLGELIMMSRRGSYVRKANQIGKWDPPKIMRKTGRKQAFGCFSMVTSSSVIE 296
            DM R+  TLGELIMMSRR S +RKA Q+ KWDPPK   KT RKQAFGCFS+VT SS+IE
Sbjct: 190 CDMSRKQPTLGELIMMSRRRSCIRKATQMNKWDPPK---KTTRKQAFGCFSVVTGSSIIE 246

Query: 297 GLLKKK---YPKLELI 309
           GLLKKK   YP+L+L+
Sbjct: 247 GLLKKKYYYYPRLKLV 262