Miyakogusa Predicted Gene

Lj5g3v2033940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2033940.1 tr|Q32ZJ5|Q32ZJ5_SOLTU RAR1-like protein
(Fragment) OS=Solanum tuberosum PE=4
SV=1,68.49,5e-19,CHORD,Cysteine/histidine-rich domain; RAR1,NULL;
CYSTEINE AND HISTIDINE-RICH DOMAIN (CHORD)-CONTAINI,CUFF.56483.1
         (184 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g102470.3 | binding; zinc ion-binding protein | HC | chr1:...   296   1e-80
Medtr1g102470.2 | binding; zinc ion-binding protein | HC | chr1:...   295   1e-80
Medtr1g102470.1 | binding; zinc ion-binding protein | HC | chr1:...   295   1e-80

>Medtr1g102470.3 | binding; zinc ion-binding protein | HC |
           chr1:46277011-46278820 | 20130731
          Length = 184

 Score =  296 bits (757), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/183 (80%), Positives = 154/183 (84%)

Query: 1   MKEWSCCKKRSHDFSLFLQIPGCKTGKHTTEKQVIAPVKKXXXXXXXXXXXXXXXXKDSC 60
           MKEWSCCKKRSHDFSLFL+IPGCKTGKHTTEKQVIAP KK                KDSC
Sbjct: 1   MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKQVIAPAKKKPVPPPSVASSTNASTKDSC 60

Query: 61  SRCRQGFFCSDHGSQSKAVNIVGDKSVNRAGDAPAVNSSIVQAPKPPKKIVDINEPQTCK 120
           SRCRQGFFCSDH SQSK V IVGDKS N AGDA A ++S V+  KPPKKIV INEPQ CK
Sbjct: 61  SRCRQGFFCSDHASQSKPVTIVGDKSENLAGDASAESNSKVEVVKPPKKIVGINEPQICK 120

Query: 121 NKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWHNA 180
           NKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCD+HVKEFDEF+SIPPCTKGWHNA
Sbjct: 121 NKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSIPPCTKGWHNA 180

Query: 181 DPD 183
           DP+
Sbjct: 181 DPE 183


>Medtr1g102470.2 | binding; zinc ion-binding protein | HC |
           chr1:46274073-46278703 | 20130731
          Length = 225

 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/183 (80%), Positives = 154/183 (84%)

Query: 1   MKEWSCCKKRSHDFSLFLQIPGCKTGKHTTEKQVIAPVKKXXXXXXXXXXXXXXXXKDSC 60
           MKEWSCCKKRSHDFSLFL+IPGCKTGKHTTEKQVIAP KK                KDSC
Sbjct: 42  MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKQVIAPAKKKPVPPPSVASSTNASTKDSC 101

Query: 61  SRCRQGFFCSDHGSQSKAVNIVGDKSVNRAGDAPAVNSSIVQAPKPPKKIVDINEPQTCK 120
           SRCRQGFFCSDH SQSK V IVGDKS N AGDA A ++S V+  KPPKKIV INEPQ CK
Sbjct: 102 SRCRQGFFCSDHASQSKPVTIVGDKSENLAGDASAESNSKVEVVKPPKKIVGINEPQICK 161

Query: 121 NKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWHNA 180
           NKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCD+HVKEFDEF+SIPPCTKGWHNA
Sbjct: 162 NKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSIPPCTKGWHNA 221

Query: 181 DPD 183
           DP+
Sbjct: 222 DPE 224



 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 31/63 (49%)

Query: 119 CKNKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWH 178
           C+  GC   F + DN D +C YH     FHD M+ W CC     +F  F+ IP C  G H
Sbjct: 10  CQRIGCNAMFSDDDNLDGSCQYHDLGPTFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKH 69

Query: 179 NAD 181
             +
Sbjct: 70  TTE 72


>Medtr1g102470.1 | binding; zinc ion-binding protein | HC |
           chr1:46274098-46278703 | 20130731
          Length = 225

 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/183 (80%), Positives = 154/183 (84%)

Query: 1   MKEWSCCKKRSHDFSLFLQIPGCKTGKHTTEKQVIAPVKKXXXXXXXXXXXXXXXXKDSC 60
           MKEWSCCKKRSHDFSLFL+IPGCKTGKHTTEKQVIAP KK                KDSC
Sbjct: 42  MKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKQVIAPAKKKPVPPPSVASSTNASTKDSC 101

Query: 61  SRCRQGFFCSDHGSQSKAVNIVGDKSVNRAGDAPAVNSSIVQAPKPPKKIVDINEPQTCK 120
           SRCRQGFFCSDH SQSK V IVGDKS N AGDA A ++S V+  KPPKKIV INEPQ CK
Sbjct: 102 SRCRQGFFCSDHASQSKPVTIVGDKSENLAGDASAESNSKVEVVKPPKKIVGINEPQICK 161

Query: 121 NKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWHNA 180
           NKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCD+HVKEFDEF+SIPPCTKGWHNA
Sbjct: 162 NKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSIPPCTKGWHNA 221

Query: 181 DPD 183
           DP+
Sbjct: 222 DPE 224



 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 31/63 (49%)

Query: 119 CKNKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFISIPPCTKGWH 178
           C+  GC   F + DN D +C YH     FHD M+ W CC     +F  F+ IP C  G H
Sbjct: 10  CQRIGCNAMFSDDDNLDGSCQYHDLGPTFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKH 69

Query: 179 NAD 181
             +
Sbjct: 70  TTE 72