Miyakogusa Predicted Gene
- Lj5g3v2030840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2030840.1 Non Characterized Hit- tr|B9R9K4|B9R9K4_RICCO DNA
binding protein, putative OS=Ricinus communis GN=R,42.96,4e-18,HLH,
helix-loop-helix DNA-binding domain,Helix-loop-helix domain;
HLH,Helix-loop-helix domain; coile,CUFF.56473.1
(258 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g102370.1 | transcription factor | HC | chr1:46230813-4622... 270 9e-73
Medtr0007s0380.1 | transcription factor | HC | scaffold0007:2188... 187 7e-48
Medtr0007s0330.2 | transcription factor | HC | scaffold0007:1961... 103 2e-22
Medtr0007s0330.1 | transcription factor | HC | scaffold0007:1961... 100 9e-22
Medtr1g102380.1 | transcription factor bHLH120-like protein, put... 91 1e-18
Medtr1g048720.3 | transcription factor ORG2-like protein | HC | ... 51 1e-06
Medtr1g048750.1 | transcription factor ORG2-like protein | HC | ... 51 1e-06
Medtr1g048720.4 | transcription factor ORG2-like protein | HC | ... 50 2e-06
Medtr1g048720.2 | transcription factor ORG2-like protein | HC | ... 50 2e-06
Medtr1g048720.1 | transcription factor ORG2-like protein | HC | ... 50 3e-06
Medtr4g078350.1 | helix loop helix DNA-binding domain protein | ... 49 6e-06
Medtr1g048710.1 | transcription factor ORG2-like protein | HC | ... 48 8e-06
>Medtr1g102370.1 | transcription factor | HC |
chr1:46230813-46229149 | 20130731
Length = 244
Score = 270 bits (690), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 155/263 (58%), Positives = 178/263 (67%), Gaps = 24/263 (9%)
Query: 1 MFPLQRSNKLATPFSNSVRHRQH-KISEDQILDDCDSLVVDFSDKKLSSGRTKRILYHST 59
MFPLQR N+LA P SNS+ H QH KISED ILDDCDSLV+DFS KK+ + R L++
Sbjct: 1 MFPLQRCNELAKPLSNSLNHHQHHKISEDLILDDCDSLVIDFSLKKMDTNRPPNKLFYID 60
Query: 60 AGTTHANNSEEFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVV 119
+N + KKKMVHREIEKQRRQEMATLH SLRSLLPLHFIKGKRSLSDQMNE V
Sbjct: 61 RANHGSNRNSIEDKKKMVHREIEKQRRQEMATLHTSLRSLLPLHFIKGKRSLSDQMNEAV 120
Query: 120 NYINHLQKNIKELSDKRDELNNLSN--ILKKDHASASFTFHQSDGCVGIEIT--SGFREE 175
NYINHL+KN+KELS KRDEL LSN + K H S SFT H+++ VGIEI+ +GF E
Sbjct: 121 NYINHLKKNMKELSYKRDELKKLSNPSLKNKSHVSCSFTIHKNNRTVGIEISTKTGFI-E 179
Query: 176 EGLPVSKXXXXXXXXXXXVVSCISTKVNGKLLHSMQCEVWRSRECYHFVFLFYKSYSNIF 235
EG P+SK VVSC S +VNGKLLHS+QCEV S
Sbjct: 180 EGAPLSKFLEQLMRYGLDVVSCFSIQVNGKLLHSVQCEVINSDS---------------- 223
Query: 236 MFILLTELRRKISNVIQSFSCSD 258
+ LTELRR +SN+ SFSCSD
Sbjct: 224 --VDLTELRRNLSNLNPSFSCSD 244
>Medtr0007s0380.1 | transcription factor | HC |
scaffold0007:218856-222903 | 20130731
Length = 239
Score = 187 bits (476), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 120/262 (45%), Positives = 154/262 (58%), Gaps = 36/262 (13%)
Query: 2 FPLQRSNKLATPFSNSVRHRQHKISEDQILDD-CDSLVVDFSDK--KLSSGRTKRILYHS 58
FPL + FSNS + HKIS+D ILD+ SL+V+ SDK S +LY +
Sbjct: 6 FPLHQ-------FSNSPHKQHHKISQDLILDNNYASLLVNNSDKIFSFSCQPNNELLYEA 58
Query: 59 TAGTTHANNSEEFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEV 118
+NS E KK+K+VHREIE+QRRQEMAT +ASLRSLLPL FIKGKRS+SD MNE
Sbjct: 59 AKN---QDNSFEQKKRKIVHREIERQRRQEMATYYASLRSLLPLEFIKGKRSISDHMNEA 115
Query: 119 VNYINHLQKNIKELSDKRDELNNLSNI----LKKDHASASFTFHQSDGCVGIEITSGFRE 174
VNYI H+Q NI EL KRDEL LSN ++ +HAS + Q++G + IE TSG RE
Sbjct: 116 VNYIKHMQNNINELGTKRDELKKLSNSKLENIESNHASCNLNVQQNNGILRIEFTSGLRE 175
Query: 175 EEGLPVSKXXXXXXXXXXXVVSCISTKVNGKLLHSMQCEVWRSRECYHFVFLFYKSYSNI 234
E+ L +S+ V SC++T++NG+LL S+ CEV S F
Sbjct: 176 EK-LKLSQLLNFLAKEGFEVDSCVTTEINGRLLQSVMCEVNNSNIVDQF----------- 223
Query: 235 FMFILLTELRRKISNVIQSFSC 256
ELR+KI VI + +C
Sbjct: 224 -------ELRKKIVMVIPTMAC 238
>Medtr0007s0330.2 | transcription factor | HC |
scaffold0007:196156-194510 | 20130731
Length = 163
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 96/151 (63%), Gaps = 12/151 (7%)
Query: 74 KKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNIKELS 133
KK +H+E E+QRRQEM+ L +LRSLLP+ +IKGKRS+SD +NE ++YINHLQ +K+L
Sbjct: 6 KKWMHKETERQRRQEMSNLCTNLRSLLPIEYIKGKRSISDHVNEAMHYINHLQNKVKQLQ 65
Query: 134 DKRDEL---NNLS-NILKKDHASAS----FTFHQS-DGCVGIEITSGFREEEGL-PVSKX 183
DK++EL +NLS N+ ++ +S+S F Q G G+EI + + L P+S+
Sbjct: 66 DKKEELMKVSNLSRNVTTQNGSSSSNIQPFVIVQPFPG--GLEIVCSYSFNKCLFPLSRV 123
Query: 184 XXXXXXXXXXVVSCISTKVNGKLLHSMQCEV 214
++SC S + G+ +++++ EV
Sbjct: 124 LSMLLKEGLNLISCTSNMIEGRFIYTIRSEV 154
>Medtr0007s0330.1 | transcription factor | HC |
scaffold0007:196183-192795 | 20130731
Length = 204
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 95/150 (63%), Gaps = 12/150 (8%)
Query: 74 KKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNIKELS 133
KK +H+E E+QRRQEM+ L +LRSLLP+ +IKGKRS+SD +NE ++YINHLQ +K+L
Sbjct: 18 KKWMHKETERQRRQEMSNLCTNLRSLLPIEYIKGKRSISDHVNEAMHYINHLQNKVKQLQ 77
Query: 134 DKRDEL---NNLS-NILKKDHASAS----FTFHQS-DGCVGIEITSGFREEEGL-PVSKX 183
DK++EL +NLS N+ ++ +S+S F Q G G+EI + + L P+S+
Sbjct: 78 DKKEELMKVSNLSRNVTTQNGSSSSNIQPFVIVQPFPG--GLEIVCSYSFNKCLFPLSRV 135
Query: 184 XXXXXXXXXXVVSCISTKVNGKLLHSMQCE 213
++SC S + G+ +++++ E
Sbjct: 136 LSMLLKEGLNLISCTSNMIEGRFIYTIRSE 165
>Medtr1g102380.1 | transcription factor bHLH120-like protein,
putative | HC | chr1:46235719-46236971 | 20130731
Length = 191
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 74 KKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNIKELS 133
KKM+ RE+EKQRR +M+ L +SLRS LP IKGKRS+SD + E NY+ L++ I EL
Sbjct: 19 KKMIRREVEKQRRMQMSILCSSLRSSLPFDLIKGKRSVSDHIGEAANYVQILKQKINELE 78
Query: 134 DKRDELNNL--------SNILKKDHASA--SFTFHQSDGCVGIEITSGFREEEGLPVSKX 183
KRD++ + N L D +S G V I I SG E+ +S
Sbjct: 79 IKRDKMKEMVSSSRVETGNELSADPSSVVKCVKIDLIPGGVEIVICSGL-EDYSSRLSDL 137
Query: 184 XXXXXXXXXXVVSCISTKVNGKLLHSMQCEV 214
VV C++ +VNGK+ H+++ EV
Sbjct: 138 MKIILQEGCDVVHCVTNQVNGKIFHTIKSEV 168
>Medtr1g048720.3 | transcription factor ORG2-like protein | HC |
chr1:18792728-18791868 | 20130731
Length = 219
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 10 LATPFSNSVRHRQHKISEDQILDDCDSLVVDFSDKKLSSGRTKRILYHSTAGTTHANNSE 69
+ PF + H QH ++ D + +F D+ + ++ + + +S+
Sbjct: 12 IGWPFEEPLSHNQH---QNSFYKDTVDQLFNFHDQVEAEI--------NSTDPSQSTSSD 60
Query: 70 EFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNI 129
KK+VH E+ RR+++ L++SLRSLLP+ F + K S+ ++ V+ YI LQ +
Sbjct: 61 LSMVKKLVHNASERDRRKKINNLYSSLRSLLPV-FDQMKLSIPATISRVLKYIPELQNQV 119
Query: 130 KELSDKRDEL 139
+ L ++DE+
Sbjct: 120 EGLIKRKDEI 129
>Medtr1g048750.1 | transcription factor ORG2-like protein | HC |
chr1:18804230-18802184 | 20130731
Length = 271
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 10 LATPFSNSVRHRQHKISEDQILDDCDSLVVDFSDKKLSSGRTKRILYHSTAGTTHANNSE 69
+ PF S+ H QH ++Q+ + D + + + + + + +S+
Sbjct: 12 IGWPFEESLSHNQH---QNQLFNFHDQVEAEIN----------------STDPSQSTSSD 52
Query: 70 EFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNI 129
KK+VH E+ RR+++ L++SLRSLLP+ K S+ ++ V+ YI +QK++
Sbjct: 53 LSMVKKLVHNASERDRRKKINNLYSSLRSLLPISDQMKKLSIPATISRVLKYIPEIQKHV 112
Query: 130 KELSDKRDEL 139
+ L +++E+
Sbjct: 113 EGLVKRKEEI 122
>Medtr1g048720.4 | transcription factor ORG2-like protein | HC |
chr1:18792728-18791868 | 20130731
Length = 220
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 10 LATPFSNSVRHRQHKISEDQILDDCDSLVVDFSDKKLSSGRTKRILYHSTAGTTHANNSE 69
+ PF + H QH ++ D + +F D+ + ++ + + +S+
Sbjct: 12 IGWPFEEPLSHNQH---QNSFYKDTVDQLFNFHDQVEAEI--------NSTDPSQSTSSD 60
Query: 70 EFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNI 129
KK+VH E+ RR+++ L++SLRSLLP+ K S+ ++ V+ YI LQ +
Sbjct: 61 LSMVKKLVHNASERDRRKKINNLYSSLRSLLPVFDQMKKLSIPATISRVLKYIPELQNQV 120
Query: 130 KELSDKRDEL 139
+ L ++DE+
Sbjct: 121 EGLIKRKDEI 130
>Medtr1g048720.2 | transcription factor ORG2-like protein | HC |
chr1:18792752-18791151 | 20130731
Length = 246
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 10 LATPFSNSVRHRQHKISEDQILDDCDSLVVDFSDKKLSSGRTKRILYHSTAGTTHANNSE 69
+ PF + H QH ++ D + +F D+ + ++ + + +S+
Sbjct: 12 IGWPFEEPLSHNQH---QNSFYKDTVDQLFNFHDQVEAEI--------NSTDPSQSTSSD 60
Query: 70 EFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNI 129
KK+VH E+ RR+++ L++SLRSLLP+ F + K S+ ++ V+ YI LQ +
Sbjct: 61 LSMVKKLVHNASERDRRKKINNLYSSLRSLLPV-FDQMKLSIPATISRVLKYIPELQNQV 119
Query: 130 KELSDKRDEL 139
+ L ++DE+
Sbjct: 120 EGLIKRKDEI 129
>Medtr1g048720.1 | transcription factor ORG2-like protein | HC |
chr1:18792728-18791151 | 20130731
Length = 247
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 10 LATPFSNSVRHRQHKISEDQILDDCDSLVVDFSDKKLSSGRTKRILYHSTAGTTHANNSE 69
+ PF + H QH ++ D + +F D+ + ++ + + +S+
Sbjct: 12 IGWPFEEPLSHNQH---QNSFYKDTVDQLFNFHDQVEAEI--------NSTDPSQSTSSD 60
Query: 70 EFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNI 129
KK+VH E+ RR+++ L++SLRSLLP+ K S+ ++ V+ YI LQ +
Sbjct: 61 LSMVKKLVHNASERDRRKKINNLYSSLRSLLPVFDQMKKLSIPATISRVLKYIPELQNQV 120
Query: 130 KELSDKRDEL 139
+ L ++DE+
Sbjct: 121 EGLIKRKDEI 130
>Medtr4g078350.1 | helix loop helix DNA-binding domain protein | HC
| chr4:30195137-30195963 | 20130731
Length = 208
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 75 KMVHREIEKQRRQEMATLHASLRSLLPLHFIKG-KRSLSDQMNEVVNYINHLQKNIKELS 133
K+ R +EK RR +M L++ L SLLP + K +L DQ++E +NYI L+ N++
Sbjct: 16 KVERRLVEKNRRNQMKILYSKLNSLLPNYNPKELPLALPDQVDEAINYIKSLEANVQMAM 75
Query: 134 DKRDELNNLSNILKKDHA-----SASFTFHQSDGCVGIEITSGF 172
+K++ L N +++ S F H+ + I +T G
Sbjct: 76 EKKERLLAGKNKRSREYCLDLPKSPCFEIHEIGSSLQIILTCGL 119
>Medtr1g048710.1 | transcription factor ORG2-like protein | HC |
chr1:18783233-18780583 | 20130731
Length = 240
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 10 LATPFSNSVRHRQHKISEDQILDDCDSLVVDFSDKKLSSGRTKRILYHSTAGTTHANNSE 69
+ PF S+ H QH ++Q+ + D + + + + + + +S+
Sbjct: 12 IGWPFEESLSHNQH---QNQLFNFHDQVEAEIN----------------STDPSQSTSSD 52
Query: 70 EFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNI 129
KK+VH E+ RR+++ L++SLRSLLP+ + K S+ ++ V+ YI LQ +
Sbjct: 53 LSMVKKLVHNASERDRRKKINNLYSSLRSLLPVS-DQMKLSIPGTISRVLKYIPELQNQV 111
Query: 130 KELSDKRDEL 139
+ L ++DE+
Sbjct: 112 EGLIKRKDEI 121