Miyakogusa Predicted Gene
- Lj5g3v2027300.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2027300.1 Non Characterized Hit- tr|B7FHI0|B7FHI0_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,27.43,0.000004,no description,Nucleotide-binding, alpha-beta
plait; RRM_1,RNA recognition motif domain;
ARGININE/SE,NODE_21991_length_1496_cov_227.554138.path2.1
(338 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g101520.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 327 1e-89
Medtr1g101520.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 327 1e-89
Medtr1g101520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 327 1e-89
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 325 4e-89
Medtr8g032590.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 167 2e-41
Medtr8g032590.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 167 2e-41
Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein... 166 3e-41
Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 166 3e-41
Medtr8g032590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 166 3e-41
Medtr8g032590.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 166 3e-41
Medtr8g027190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 126 2e-29
Medtr8g027190.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 126 2e-29
Medtr8g027190.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 126 3e-29
Medtr8g027190.9 | RNA-binding (RRM/RBD/RNP motif) family protein... 126 3e-29
Medtr8g027190.10 | RNA-binding (RRM/RBD/RNP motif) family protei... 126 3e-29
Medtr8g027190.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 126 3e-29
Medtr8g027190.6 | RNA-binding (RRM/RBD/RNP motif) family protein... 125 4e-29
Medtr8g027190.8 | RNA-binding (RRM/RBD/RNP motif) family protein... 125 4e-29
Medtr8g027190.7 | RNA-binding (RRM/RBD/RNP motif) family protein... 125 4e-29
Medtr8g027190.5 | RNA-binding (RRM/RBD/RNP motif) family protein... 125 4e-29
>Medtr1g101520.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856661-45851996 | 20130731
Length = 347
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 198/342 (57%), Positives = 217/342 (63%), Gaps = 35/342 (10%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEP 77
FGRKGRRLRVEWTK ERG+ LFVINFDT+ TRTRDLERHFEP
Sbjct: 19 FGRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEP 78
Query: 78 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 137
YGKI SVRIR+NFAFVQYESEDDACKALEATNNSKL+DRVISVEFAA+ DDDRRNG+SP+
Sbjct: 79 YGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR-DDDRRNGHSPD 137
Query: 138 XXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPDYXXXXXXXXXXXXXXX 197
ERGSPDYGRG SPYKRERSSPDY
Sbjct: 138 RGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHRRER 197
Query: 198 XXXXHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGGDS 257
+GRR+PSPYRRERDG++ VRD+SRSP+HKER RTDRS S S + R PQ G S
Sbjct: 198 GSPAYGRRNPSPYRRERDGAEAVRDTSRSPYHKERRRTDRSRSHSLEEGERIEPQKGHGS 257
Query: 258 SRSPYDPVKATSPENGEIKH-------------------SPDARGNPSDYNGYGGGSPDN 298
SPY VK SPENG + SPDA+GNPS YN Y GGSP+
Sbjct: 258 DPSPYGTVK-DSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDY-GGSPNT 315
Query: 299 MRXXXXXXXXXXXXRDSPNYGGPESPMHERYR--SQSPPAEE 338
M RDSPNYGGPESPM+E+YR SQSPPAEE
Sbjct: 316 M----------PEPRDSPNYGGPESPMNEQYRSQSQSPPAEE 347
>Medtr1g101520.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856661-45851996 | 20130731
Length = 347
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 198/342 (57%), Positives = 217/342 (63%), Gaps = 35/342 (10%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEP 77
FGRKGRRLRVEWTK ERG+ LFVINFDT+ TRTRDLERHFEP
Sbjct: 19 FGRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEP 78
Query: 78 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 137
YGKI SVRIR+NFAFVQYESEDDACKALEATNNSKL+DRVISVEFAA+ DDDRRNG+SP+
Sbjct: 79 YGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR-DDDRRNGHSPD 137
Query: 138 XXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPDYXXXXXXXXXXXXXXX 197
ERGSPDYGRG SPYKRERSSPDY
Sbjct: 138 RGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHRRER 197
Query: 198 XXXXHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGGDS 257
+GRR+PSPYRRERDG++ VRD+SRSP+HKER RTDRS S S + R PQ G S
Sbjct: 198 GSPAYGRRNPSPYRRERDGAEAVRDTSRSPYHKERRRTDRSRSHSLEEGERIEPQKGHGS 257
Query: 258 SRSPYDPVKATSPENGEIKH-------------------SPDARGNPSDYNGYGGGSPDN 298
SPY VK SPENG + SPDA+GNPS YN Y GGSP+
Sbjct: 258 DPSPYGTVK-DSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDY-GGSPNT 315
Query: 299 MRXXXXXXXXXXXXRDSPNYGGPESPMHERYR--SQSPPAEE 338
M RDSPNYGGPESPM+E+YR SQSPPAEE
Sbjct: 316 M----------PEPRDSPNYGGPESPMNEQYRSQSQSPPAEE 347
>Medtr1g101520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856668-45851996 | 20130731
Length = 347
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 198/342 (57%), Positives = 217/342 (63%), Gaps = 35/342 (10%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEP 77
FGRKGRRLRVEWTK ERG+ LFVINFDT+ TRTRDLERHFEP
Sbjct: 19 FGRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEP 78
Query: 78 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 137
YGKI SVRIR+NFAFVQYESEDDACKALEATNNSKL+DRVISVEFAA+ DDDRRNG+SP+
Sbjct: 79 YGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR-DDDRRNGHSPD 137
Query: 138 XXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPDYXXXXXXXXXXXXXXX 197
ERGSPDYGRG SPYKRERSSPDY
Sbjct: 138 RGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHRRER 197
Query: 198 XXXXHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGGDS 257
+GRR+PSPYRRERDG++ VRD+SRSP+HKER RTDRS S S + R PQ G S
Sbjct: 198 GSPAYGRRNPSPYRRERDGAEAVRDTSRSPYHKERRRTDRSRSHSLEEGERIEPQKGHGS 257
Query: 258 SRSPYDPVKATSPENGEIKH-------------------SPDARGNPSDYNGYGGGSPDN 298
SPY VK SPENG + SPDA+GNPS YN Y GGSP+
Sbjct: 258 DPSPYGTVK-DSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDY-GGSPNT 315
Query: 299 MRXXXXXXXXXXXXRDSPNYGGPESPMHERYR--SQSPPAEE 338
M RDSPNYGGPESPM+E+YR SQSPPAEE
Sbjct: 316 M----------PEPRDSPNYGGPESPMNEQYRSQSQSPPAEE 347
>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856698-45851996 | 20130731
Length = 388
Score = 325 bits (833), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 198/342 (57%), Positives = 217/342 (63%), Gaps = 35/342 (10%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEP 77
FGRKGRRLRVEWTK ERG+ LFVINFDT+ TRTRDLERHFEP
Sbjct: 60 FGRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEP 119
Query: 78 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 137
YGKI SVRIR+NFAFVQYESEDDACKALEATNNSKL+DRVISVEFAA+ DDDRRNG+SP+
Sbjct: 120 YGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR-DDDRRNGHSPD 178
Query: 138 XXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPDYXXXXXXXXXXXXXXX 197
ERGSPDYGRG SPYKRERSSPDY
Sbjct: 179 RGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHRRER 238
Query: 198 XXXXHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGGDS 257
+GRR+PSPYRRERDG++ VRD+SRSP+HKER RTDRS S S + R PQ G S
Sbjct: 239 GSPAYGRRNPSPYRRERDGAEAVRDTSRSPYHKERRRTDRSRSHSLEEGERIEPQKGHGS 298
Query: 258 SRSPYDPVKATSPENGEIKH-------------------SPDARGNPSDYNGYGGGSPDN 298
SPY VK SPENG + SPDA+GNPS YN Y GGSP+
Sbjct: 299 DPSPYGTVK-DSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDY-GGSPNT 356
Query: 299 MRXXXXXXXXXXXXRDSPNYGGPESPMHERYR--SQSPPAEE 338
M RDSPNYGGPESPM+E+YR SQSPPAEE
Sbjct: 357 M----------PEPRDSPNYGGPESPMNEQYRSQSQSPPAEE 388
>Medtr8g032590.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12495283-12493893 | 20130731
Length = 253
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 160/321 (49%), Gaps = 97/321 (30%)
Query: 19 FGRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEP 77
FGRKGRR+RVEWTK ER LF+INFD HTRTRDLERHF+P
Sbjct: 19 FGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDP 78
Query: 78 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 137
YGKI+++RIRRNFAF+Q+E++++A KALEATN SK +DRVI+VE+A +DDD +R+GYSP+
Sbjct: 79 YGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPD 138
Query: 138 XXXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGASPYKRERSSPDYXXXXXXXXXXXXX 195
RGSPD YGRG SPD
Sbjct: 139 RRG--------------------RGSPDGRYGRG---------SPD-------------- 155
Query: 196 XXXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNG 254
+GR RSPSPYRR R D R S+ + + RG SPK SP NG
Sbjct: 156 ----GRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRG--------SPKYERAESPANG 203
Query: 255 GDSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRD 314
SRSP P + ++P + P+ARG
Sbjct: 204 RYDSRSP--PPRGSNPPS-----RPEARG------------------------------- 225
Query: 315 SPNYGGPESPMHERYRSQSPP 335
SP Y ESPM+ RY S+SPP
Sbjct: 226 SPKYERAESPMNRRYDSRSPP 246
>Medtr8g032590.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12495283-12493893 | 20130731
Length = 253
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 160/321 (49%), Gaps = 97/321 (30%)
Query: 19 FGRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEP 77
FGRKGRR+RVEWTK ER LF+INFD HTRTRDLERHF+P
Sbjct: 19 FGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDP 78
Query: 78 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 137
YGKI+++RIRRNFAF+Q+E++++A KALEATN SK +DRVI+VE+A +DDD +R+GYSP+
Sbjct: 79 YGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPD 138
Query: 138 XXXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGASPYKRERSSPDYXXXXXXXXXXXXX 195
RGSPD YGRG SPD
Sbjct: 139 RRG--------------------RGSPDGRYGRG---------SPD-------------- 155
Query: 196 XXXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNG 254
+GR RSPSPYRR R D R S+ + + RG SPK SP NG
Sbjct: 156 ----GRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRG--------SPKYERAESPANG 203
Query: 255 GDSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRD 314
SRSP P + ++P + P+ARG
Sbjct: 204 RYDSRSP--PPRGSNPPS-----RPEARG------------------------------- 225
Query: 315 SPNYGGPESPMHERYRSQSPP 335
SP Y ESPM+ RY S+SPP
Sbjct: 226 SPKYERAESPMNRRYDSRSPP 246
>Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 160/321 (49%), Gaps = 97/321 (30%)
Query: 19 FGRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEP 77
FGRKGRR+RVEWTK ER LF+INFD HTRTRDLERHF+P
Sbjct: 60 FGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDP 119
Query: 78 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 137
YGKI+++RIRRNFAF+Q+E++++A KALEATN SK +DRVI+VE+A +DDD +R+GYSP+
Sbjct: 120 YGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPD 179
Query: 138 XXXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGASPYKRERSSPDYXXXXXXXXXXXXX 195
RGSPD YGRG SPD
Sbjct: 180 RRG--------------------RGSPDGRYGRG---------SPD-------------- 196
Query: 196 XXXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNG 254
+GR RSPSPYRR R D R S+ + + RG SPK SP NG
Sbjct: 197 ----GRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRG--------SPKYERAESPANG 244
Query: 255 GDSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRD 314
SRSP P + ++P + P+ARG
Sbjct: 245 RYDSRSP--PPRGSNPPS-----RPEARG------------------------------- 266
Query: 315 SPNYGGPESPMHERYRSQSPP 335
SP Y ESPM+ RY S+SPP
Sbjct: 267 SPKYERAESPMNRRYDSRSPP 287
>Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 160/321 (49%), Gaps = 97/321 (30%)
Query: 19 FGRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEP 77
FGRKGRR+RVEWTK ER LF+INFD HTRTRDLERHF+P
Sbjct: 60 FGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDP 119
Query: 78 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 137
YGKI+++RIRRNFAF+Q+E++++A KALEATN SK +DRVI+VE+A +DDD +R+GYSP+
Sbjct: 120 YGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPD 179
Query: 138 XXXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGASPYKRERSSPDYXXXXXXXXXXXXX 195
RGSPD YGRG SPD
Sbjct: 180 RRG--------------------RGSPDGRYGRG---------SPD-------------- 196
Query: 196 XXXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNG 254
+GR RSPSPYRR R D R S+ + + RG SPK SP NG
Sbjct: 197 ----GRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRG--------SPKYERAESPANG 244
Query: 255 GDSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRD 314
SRSP P + ++P + P+ARG
Sbjct: 245 RYDSRSP--PPRGSNPPS-----RPEARG------------------------------- 266
Query: 315 SPNYGGPESPMHERYRSQSPP 335
SP Y ESPM+ RY S+SPP
Sbjct: 267 SPKYERAESPMNRRYDSRSPP 287
>Medtr8g032590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12495544-12493893 | 20130731
Length = 283
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 160/321 (49%), Gaps = 97/321 (30%)
Query: 19 FGRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEP 77
FGRKGRR+RVEWTK ER LF+INFD HTRTRDLERHF+P
Sbjct: 49 FGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDP 108
Query: 78 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 137
YGKI+++RIRRNFAF+Q+E++++A KALEATN SK +DRVI+VE+A +DDD +R+GYSP+
Sbjct: 109 YGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPD 168
Query: 138 XXXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGASPYKRERSSPDYXXXXXXXXXXXXX 195
RGSPD YGRG SPD
Sbjct: 169 RRG--------------------RGSPDGRYGRG---------SPD-------------- 185
Query: 196 XXXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNG 254
+GR RSPSPYRR R D R S+ + + RG SPK SP NG
Sbjct: 186 ----GRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRG--------SPKYERAESPANG 233
Query: 255 GDSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRD 314
SRSP P + ++P + P+ARG
Sbjct: 234 RYDSRSP--PPRGSNPPS-----RPEARG------------------------------- 255
Query: 315 SPNYGGPESPMHERYRSQSPP 335
SP Y ESPM+ RY S+SPP
Sbjct: 256 SPKYERAESPMNRRYDSRSPP 276
>Medtr8g032590.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12495544-12493893 | 20130731
Length = 283
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 160/321 (49%), Gaps = 97/321 (30%)
Query: 19 FGRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEP 77
FGRKGRR+RVEWTK ER LF+INFD HTRTRDLERHF+P
Sbjct: 49 FGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDP 108
Query: 78 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 137
YGKI+++RIRRNFAF+Q+E++++A KALEATN SK +DRVI+VE+A +DDD +R+GYSP+
Sbjct: 109 YGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPD 168
Query: 138 XXXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGASPYKRERSSPDYXXXXXXXXXXXXX 195
RGSPD YGRG SPD
Sbjct: 169 RRG--------------------RGSPDGRYGRG---------SPD-------------- 185
Query: 196 XXXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNG 254
+GR RSPSPYRR R D R S+ + + RG SPK SP NG
Sbjct: 186 ----GRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRG--------SPKYERAESPANG 233
Query: 255 GDSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRD 314
SRSP P + ++P + P+ARG
Sbjct: 234 RYDSRSP--PPRGSNPPS-----RPEARG------------------------------- 255
Query: 315 SPNYGGPESPMHERYRSQSPP 335
SP Y ESPM+ RY S+SPP
Sbjct: 256 SPKYERAESPMNRRYDSRSPP 276
>Medtr8g027190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 249
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 76/116 (65%), Gaps = 4/116 (3%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 78
FG RRL VEW + ERG LFVINFD TR D+ERHF+PY
Sbjct: 60 FGHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPY 115
Query: 79 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY 134
G + VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y
Sbjct: 116 GPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNY 171
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 56 LFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLL- 114
+F N + + TR +LER F YG+I V ++ FAFV YE E DA +A+ A +N
Sbjct: 4 VFAGNLE-YDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGH 62
Query: 115 -DRVISVEFAAKDDDDRRNGYSP 136
R +SVE+A + R+G P
Sbjct: 63 DKRRLSVEWARGERGRHRDGSKP 85
>Medtr8g027190.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 249
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 76/116 (65%), Gaps = 4/116 (3%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 78
FG RRL VEW + ERG LFVINFD TR D+ERHF+PY
Sbjct: 60 FGHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPY 115
Query: 79 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY 134
G + VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y
Sbjct: 116 GPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNY 171
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 56 LFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLL- 114
+F N + + TR +LER F YG+I V ++ FAFV YE E DA +A+ A +N
Sbjct: 4 VFAGNLE-YDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGH 62
Query: 115 -DRVISVEFAAKDDDDRRNGYSP 136
R +SVE+A + R+G P
Sbjct: 63 DKRRLSVEWARGERGRHRDGSKP 85
>Medtr8g027190.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 235
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 78
FG RRL VEW + ERG LFVINFD TR D+ERHF+PY
Sbjct: 46 FGHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPY 101
Query: 79 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY--SP 136
G + VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y SP
Sbjct: 102 GPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSP 161
Query: 137 EXXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPD 181
R SPDYGR SP + PD
Sbjct: 162 R--------RGGGLARSPSPGYRRRPSPDYGRPRSPVYDRYTGPD 198
>Medtr8g027190.9 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 235
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 78
FG RRL VEW + ERG LFVINFD TR D+ERHF+PY
Sbjct: 46 FGHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPY 101
Query: 79 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY--SP 136
G + VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y SP
Sbjct: 102 GPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSP 161
Query: 137 EXXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPD 181
R SPDYGR SP + PD
Sbjct: 162 R--------RGGGLARSPSPGYRRRPSPDYGRPRSPVYDRYTGPD 198
>Medtr8g027190.10 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 235
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 78
FG RRL VEW + ERG LFVINFD TR D+ERHF+PY
Sbjct: 46 FGHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPY 101
Query: 79 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY--SP 136
G + VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y SP
Sbjct: 102 GPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSP 161
Query: 137 EXXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPD 181
R SPDYGR SP + PD
Sbjct: 162 R--------RGGGLARSPSPGYRRRPSPDYGRPRSPVYDRYTGPD 198
>Medtr8g027190.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 235
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 78
FG RRL VEW + ERG LFVINFD TR D+ERHF+PY
Sbjct: 46 FGHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPY 101
Query: 79 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY--SP 136
G + VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y SP
Sbjct: 102 GPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSP 161
Query: 137 EXXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPD 181
R SPDYGR SP + PD
Sbjct: 162 R--------RGGGLARSPSPGYRRRPSPDYGRPRSPVYDRYTGPD 198
>Medtr8g027190.6 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 229
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 76/116 (65%), Gaps = 4/116 (3%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 78
FG RRL VEW + ERG LFVINFD TR D+ERHF+PY
Sbjct: 40 FGHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPY 95
Query: 79 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY 134
G + VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y
Sbjct: 96 GPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNY 151
>Medtr8g027190.8 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 229
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 76/116 (65%), Gaps = 4/116 (3%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 78
FG RRL VEW + ERG LFVINFD TR D+ERHF+PY
Sbjct: 40 FGHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPY 95
Query: 79 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY 134
G + VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y
Sbjct: 96 GPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNY 151
>Medtr8g027190.7 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 229
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 76/116 (65%), Gaps = 4/116 (3%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 78
FG RRL VEW + ERG LFVINFD TR D+ERHF+PY
Sbjct: 40 FGHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPY 95
Query: 79 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY 134
G + VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y
Sbjct: 96 GPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNY 151
>Medtr8g027190.5 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 229
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 76/116 (65%), Gaps = 4/116 (3%)
Query: 19 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 78
FG RRL VEW + ERG LFVINFD TR D+ERHF+PY
Sbjct: 40 FGHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPY 95
Query: 79 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGY 134
G + VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y
Sbjct: 96 GPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNY 151