Miyakogusa Predicted Gene

Lj5g3v2013630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2013630.1 CUFF.56359.1
         (266 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g101190.1 | cofilin/actin-depolymerizing factor-like prote...    64   1e-10
Medtr1g101190.2 | cofilin/actin-depolymerizing factor-like prote...    62   7e-10
Medtr8g468600.1 | zinc knuckle (CCHC-type) family protein | HC |...    53   3e-07

>Medtr1g101190.1 | cofilin/actin-depolymerizing factor-like protein
           | HC | chr1:45476177-45483680 | 20130731
          Length = 598

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 99  ICLRCRRRGHRAQNCPEVKDGPKDGKFCYNCGETGHPLSNCPQPLQEGGTKFAECFVCKQ 158
           +C  CR   H  Q C ++K   KD   C+ CGE GH L  C   +  GG + A C  C  
Sbjct: 383 LCWACRETDHTIQQCRKLKSLSKDEDVCFFCGEIGHSLGKCSVYIA-GGGRLARCLFCNA 441

Query: 159 RGHLSKNCPQNAHGIYPKG 177
            GH S NCP N H   PKG
Sbjct: 442 HGHFSYNCPGNCHD--PKG 458


>Medtr1g101190.2 | cofilin/actin-depolymerizing factor-like protein
           | HC | chr1:45476069-45480943 | 20130731
          Length = 481

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 99  ICLRCRRRGHRAQNCPEVKDGPKDGKFCYNCGETGHPLSNCPQPLQEGGTKFAECFVCKQ 158
           +C  CR   H  Q C ++K   KD   C+ CGE GH L  C   +  GG + A C  C  
Sbjct: 392 LCWACRETDHTIQQCRKLKSLSKDEDVCFFCGEIGHSLGKCSVYIA-GGGRLARCLFCNA 450

Query: 159 RGHLSKNCPQNAH 171
            GH S NCP N H
Sbjct: 451 HGHFSYNCPGNCH 463


>Medtr8g468600.1 | zinc knuckle (CCHC-type) family protein | HC |
           chr8:24863982-24868612 | 20130731
          Length = 392

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 18/111 (16%)

Query: 100 CLRCRRRGHRAQNCPEVKDGPKDGKF-CYNCGETGHPLSNCPQPLQEGG----TKFAECF 154
           C  C R GHR   CPE+KDG  D +F C  CGE GH    C +           K   C 
Sbjct: 277 CQNCGREGHRRHYCPELKDGLIDRRFTCRLCGEKGHNRRTCSKLRISHSDGRVIKHHRCK 336

Query: 155 VCKQRGHLSKNCPQ---------NAHGIYPKGGSCKICGGVTHLAKDCPDK 196
           +C+Q GH  + CPQ          +  +Y     C++C    H ++ CP +
Sbjct: 337 ICRQYGHNRRTCPQVISNKRMDMTSQRVY----KCRLCQKEGHNSRTCPSR 383