Miyakogusa Predicted Gene

Lj5g3v1998990.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1998990.1 Non Characterized Hit- tr|D8UA15|D8UA15_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,36.36,9e-19,MttA_Hcf106,Twin-arginine translocation protein
TatA/B/E; seg,NULL; tatAE: twin arginine-targeting p,CUFF.56323.1
         (260 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g100220.1 | sec-independent protein translocase | HC | chr...   298   2e-81
Medtr7g115180.1 | twin arginine translocase | HC | chr7:47559165...    60   3e-09
Medtr1g080910.1 | twin arginine translocase | HC | chr1:36004640...    59   4e-09
Medtr7g115180.2 | twin arginine translocase | HC | chr7:47559165...    55   9e-08
Medtr1g080910.2 | twin arginine translocase | HC | chr1:36004440...    54   1e-07

>Medtr1g100220.1 | sec-independent protein translocase | HC |
           chr1:45171283-45165728 | 20130731
          Length = 258

 Score =  298 bits (764), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 176/264 (66%), Positives = 196/264 (74%), Gaps = 10/264 (3%)

Query: 1   MTQSLAMVSSTVL-CPKLGACAVSLSPSATPHTKI-QRFHLSSWLSPMGRSLFSPWNGLK 58
           M  ++A  SST+L CPKLG        + T      Q F+L S    +G  LFSPWNGLK
Sbjct: 1   MLTAIASSSSTMLLCPKLGGTCSMSLSTTTSSYSKTQHFYLHS----LGHRLFSPWNGLK 56

Query: 59  HLGISTKPK-PLFHI-DRKGRCKGKLVYASLFGVGAPEALVIGVVALLVFGPKGLAEVAR 116
           +LG S KPK P FHI DRKGRCKG +VYASLFGVGAPEALVIGVVALLVFGPKGLAEVAR
Sbjct: 57  NLGFSIKPKKPFFHIIDRKGRCKGNVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVAR 116

Query: 117 NLGKTLRTFQPTIRELQDVSREFKSTLEREIGLDDISSPTQNPYNSNFQNXXXXXXXXXX 176
           NLGKTLR FQPTIRE+QDVSREFKSTLEREIGLDDIS+PTQN Y+SN +N          
Sbjct: 117 NLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPPSTDS 176

Query: 177 XXXXPIAVDPDGTQDPSRAYSSEEYLKITEEQLKASAAQQQQGQTPPRKEGELEPQIQPL 236
                 AVDP+G  DPSRAYSSE+YLKITEEQLKA+AAQQQ+ QTPP +E + E  IQP 
Sbjct: 177 TNGSQTAVDPNGKADPSRAYSSEDYLKITEEQLKAAAAQQQE-QTPPPEEDKSERPIQP- 234

Query: 237 AAKETATTVSPPQKPESETIPQDS 260
            A E A TV PPQKPESE++P DS
Sbjct: 235 PANEIAATVPPPQKPESESLPLDS 258


>Medtr7g115180.1 | twin arginine translocase | HC |
           chr7:47559165-47561424 | 20130731
          Length = 144

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 7/63 (11%)

Query: 86  SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSREFKSTLER 145
           +LFG+G PE +VI  VA +VFGPK L EV R++GKT+++F       Q  ++EF+S L++
Sbjct: 59  ALFGLGVPELVVIAGVAAIVFGPKKLPEVGRSIGKTVKSF-------QQAAKEFESELKK 111

Query: 146 EIG 148
           E G
Sbjct: 112 EPG 114


>Medtr1g080910.1 | twin arginine translocase | HC |
           chr1:36004640-36003563 | 20130731
          Length = 139

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 7/72 (9%)

Query: 75  KGRCKGKLVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQD 134
           + R   +    + FG+G PE +VI  VA LVFGPK L EV R++GKT+++F       Q 
Sbjct: 48  RTRSTKRFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGKTVKSF-------QQ 100

Query: 135 VSREFKSTLERE 146
            ++EF++ L++E
Sbjct: 101 AAKEFETELKKE 112


>Medtr7g115180.2 | twin arginine translocase | HC |
           chr7:47559165-47560473 | 20130731
          Length = 121

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 86  SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPT 128
           +LFG+G PE +VI  VA +VFGPK L EV R++GKT+++FQ T
Sbjct: 59  ALFGLGVPELVVIAGVAAIVFGPKKLPEVGRSIGKTVKSFQQT 101


>Medtr1g080910.2 | twin arginine translocase | HC |
           chr1:36004440-36003570 | 20130731
          Length = 107

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 35/52 (67%)

Query: 75  KGRCKGKLVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQ 126
           + R   +    + FG+G PE +VI  VA LVFGPK L EV R++GKT+++FQ
Sbjct: 48  RTRSTKRFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGKTVKSFQ 99