Miyakogusa Predicted Gene

Lj5g3v1988690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1988690.1 Non Characterized Hit- tr|J3MAK4|J3MAK4_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G1,86.67,4e-19,coiled-coil,NULL; seg,NULL,CUFF.56425.1
         (78 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g100090.2 | plant/F6N7-3 protein, putative | HC | chr1:450...    85   1e-17
Medtr1g100090.1 | plant/F6N7-3 protein, putative | HC | chr1:450...    85   1e-17

>Medtr1g100090.2 | plant/F6N7-3 protein, putative | HC |
          chr1:45090749-45093262 | 20130731
          Length = 166

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 1  MDSMACNX-XXXXXXXXXXXXXDELDRLKQAEKKKRRLEKALATSAAIISELXXXXXXXX 59
          MD+MACN               DELDRLKQAEKKKRRLEKALATSAAIISEL        
Sbjct: 7  MDNMACNKGQQHARKTKKKQVKDELDRLKQAEKKKRRLEKALATSAAIISELEKKKQKKK 66

Query: 60 XXXXRLDEEGAAIAEAVAL 78
              RLDEEGAAIAEAVAL
Sbjct: 67 EEQQRLDEEGAAIAEAVAL 85


>Medtr1g100090.1 | plant/F6N7-3 protein, putative | HC |
          chr1:45090718-45093388 | 20130731
          Length = 166

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 1  MDSMACNX-XXXXXXXXXXXXXDELDRLKQAEKKKRRLEKALATSAAIISELXXXXXXXX 59
          MD+MACN               DELDRLKQAEKKKRRLEKALATSAAIISEL        
Sbjct: 7  MDNMACNKGQQHARKTKKKQVKDELDRLKQAEKKKRRLEKALATSAAIISELEKKKQKKK 66

Query: 60 XXXXRLDEEGAAIAEAVAL 78
              RLDEEGAAIAEAVAL
Sbjct: 67 EEQQRLDEEGAAIAEAVAL 85