Miyakogusa Predicted Gene

Lj5g3v1973360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1973360.1 Non Characterized Hit- tr|B9FH16|B9FH16_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,30.56,0.000000000000004,F-box domain,F-box domain, cyclin-like;
seg,NULL; A Receptor for Ubiquitination Targets,F-box
domain,CUFF.56294.1
         (209 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g099490.1 | F-box-like protein | HC | chr1:44939582-449436...   210   7e-55
Medtr1g099490.2 | F-box-like protein | HC | chr1:44939542-449439...   208   2e-54
Medtr1g099490.3 | F-box-like protein | HC | chr1:44939542-449439...   196   9e-51

>Medtr1g099490.1 | F-box-like protein | HC | chr1:44939582-44943606
           | 20130731
          Length = 356

 Score =  210 bits (535), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 114/250 (45%), Positives = 150/250 (60%), Gaps = 47/250 (18%)

Query: 1   MAISEYKNAIVSYKRRSQAHHHIEDGHVEEGSFELPRDILENIFSSLDMQSLVSAGLVCR 60
           MA++E+K A++++KRRS+AH       VE+GS +LP DIL  IFS LDM+SLVSAG+V R
Sbjct: 90  MAVTEFKQAMIAHKRRSKAHQ------VEKGSLQLPEDILVQIFSLLDMRSLVSAGIVSR 143

Query: 61  SWSVAANDNHLWELQYGVLFG-AAKQRATRLVENRNSRLFSEPIDSTTITDWKEAVKKAY 119
           SW++AANDN LWE QY VL+G AAKQR     E+RN +L  +P D+  ITDWK+AVK AY
Sbjct: 144 SWNMAANDNCLWESQYAVLYGDAAKQRPMGPDEDRNDKLLQKPQDTKMITDWKKAVKGAY 203

Query: 120 NGSLSKKLSTNRGYCEHCETVVWLNNSKCPNVWCGRMSR--------------------- 158
            G+LS+KL+ NRGYCE C+T+VWLNNS+CPNV  G +S                      
Sbjct: 204 TGALSRKLAINRGYCECCKTIVWLNNSRCPNVHGGMISEIHDIEPVTSTATTTTKPYPTK 263

Query: 159 -----------------NQNVKQLTTLQVVEYILNXXXXXX--XXXXXXXXXEEEGPVSR 199
                            N +++ +T+ QV EY+LN                  E G +SR
Sbjct: 264 WGRLHGSNYAIVFYHKPNLDIEHVTSFQVAEYLLNGSLPMKYYSSDSDSDSDSEGGSLSR 323

Query: 200 LWAYPKHIGL 209
           LWAYPK+ G+
Sbjct: 324 LWAYPKYPGI 333


>Medtr1g099490.2 | F-box-like protein | HC | chr1:44939542-44943921
           | 20130731
          Length = 333

 Score =  208 bits (530), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/248 (45%), Positives = 148/248 (59%), Gaps = 47/248 (18%)

Query: 1   MAISEYKNAIVSYKRRSQAHHHIEDGHVEEGSFELPRDILENIFSSLDMQSLVSAGLVCR 60
           MA++E+K A++++KRRS+AH       VE+GS +LP DIL  IFS LDM+SLVSAG+V R
Sbjct: 90  MAVTEFKQAMIAHKRRSKAHQ------VEKGSLQLPEDILVQIFSLLDMRSLVSAGIVSR 143

Query: 61  SWSVAANDNHLWELQYGVLFG-AAKQRATRLVENRNSRLFSEPIDSTTITDWKEAVKKAY 119
           SW++AANDN LWE QY VL+G AAKQR     E+RN +L  +P D+  ITDWK+AVK AY
Sbjct: 144 SWNMAANDNCLWESQYAVLYGDAAKQRPMGPDEDRNDKLLQKPQDTKMITDWKKAVKGAY 203

Query: 120 NGSLSKKLSTNRGYCEHCETVVWLNNSKCPNVWCGRMSR--------------------- 158
            G+LS+KL+ NRGYCE C+T+VWLNNS+CPNV  G +S                      
Sbjct: 204 TGALSRKLAINRGYCECCKTIVWLNNSRCPNVHGGMISEIHDIEPVTSTATTTTKPYPTK 263

Query: 159 -----------------NQNVKQLTTLQVVEYILNXXXXXX--XXXXXXXXXEEEGPVSR 199
                            N +++ +T+ QV EY+LN                  E G +SR
Sbjct: 264 WGRLHGSNYAIVFYHKPNLDIEHVTSFQVAEYLLNGSLPMKYYSSDSDSDSDSEGGSLSR 323

Query: 200 LWAYPKHI 207
           LWAYPK +
Sbjct: 324 LWAYPKQL 331


>Medtr1g099490.3 | F-box-like protein | HC | chr1:44939542-44943921
           | 20130731
          Length = 324

 Score =  196 bits (499), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 125/164 (76%), Gaps = 7/164 (4%)

Query: 1   MAISEYKNAIVSYKRRSQAHHHIEDGHVEEGSFELPRDILENIFSSLDMQSLVSAGLVCR 60
           MA++E+K A++++KRRS+AH       VE+GS +LP DIL  IFS LDM+SLVSAG+V R
Sbjct: 90  MAVTEFKQAMIAHKRRSKAHQ------VEKGSLQLPEDILVQIFSLLDMRSLVSAGIVSR 143

Query: 61  SWSVAANDNHLWELQYGVLFG-AAKQRATRLVENRNSRLFSEPIDSTTITDWKEAVKKAY 119
           SW++AANDN LWE QY VL+G AAKQR     E+RN +L  +P D+  ITDWK+AVK AY
Sbjct: 144 SWNMAANDNCLWESQYAVLYGDAAKQRPMGPDEDRNDKLLQKPQDTKMITDWKKAVKGAY 203

Query: 120 NGSLSKKLSTNRGYCEHCETVVWLNNSKCPNVWCGRMSRNQNVK 163
            G+LS+KL+ NRGYCE C+T+VWLNNS+CPNV  G +S   +++
Sbjct: 204 TGALSRKLAINRGYCECCKTIVWLNNSRCPNVHGGMISEIHDIE 247