Miyakogusa Predicted Gene

Lj5g3v1972310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1972310.1 tr|Q6IP64|Q6IP64_XENLA MGC78924 protein
OS=Xenopus laevis GN=polr3e PE=2 SV=1,26.03,7e-18,Sin_N,DNA-directed
RNA polymerase III subunit Rpc5; DNA-DIRECTED RNA POLYMERASES III 80
KDA POLYPEPT,CUFF.56373.1
         (656 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g019810.1 | DNA-directed RNA polymerase III subunit RPC5-l...   692   0.0  
Medtr5g026040.1 | DNA-directed RNA polymerase III subunit RPC5-l...   437   e-122

>Medtr5g019810.1 | DNA-directed RNA polymerase III subunit RPC5-like
           protein | HC | chr5:7511377-7522292 | 20130731
          Length = 683

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/599 (57%), Positives = 428/599 (71%), Gaps = 15/599 (2%)

Query: 57  EDDPMDEDTVEDQIVREIDVFFTPSLDENTELYVLQYPLRPSWRPYEFEERCKEVRLKPI 116
           E +PMDE   ED +VREIDV+F+PS+D +T+LYV+QYPLRPSWRPY+ +E+C+EVRLKP 
Sbjct: 98  EVNPMDE---EDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPG 154

Query: 117 SSRVEIDLSIDLDSQNIDRDFADKYSITKQTLHTPWEPATANGCVVGLLTGDKLHLHPIS 176
           +S VE+DLSIDL+S N+++  ADK   TKQTL T W+P  ANGC VGLL GDKLHLHPI 
Sbjct: 155 TSEVEVDLSIDLESYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIH 214

Query: 177 AIVQLRPSLKHLNPGGSERTNIISTTVKIEGPSXXXXXXXXXXXXXXMEPPTEQKSDEVE 236
           A+VQLRPS  +L+ GGSE+ N+ ++       +                P  EQKSD  +
Sbjct: 215 AVVQLRPSRHYLDSGGSEKKNVATSN------NQNKQTTPSMEQKSDGAPSIEQKSDSNQ 268

Query: 237 CWVPLKYHDCKSDISSRYLQQMVAQESTPMNFTVSPYDYVTTLCPALSSNSLPKGPSKRY 296
           CWVPL+YH CKSDISSRY QQMV  ES+P+NF +S YDY+ TLCP +SSN+L KGPSKRY
Sbjct: 269 CWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTYDYIATLCPGVSSNTLAKGPSKRY 328

Query: 297 LLSLPLTVEERLHKMFIEGPPLRRFNAIKHFAPEYSDKELLEYLQKHAVLLWGLWTPKSG 356
           LLSLP  VE+RL  + IEGPPL RF+AIKHFAPE SD ELL  L+K A LL G W P+S 
Sbjct: 329 LLSLP--VEKRLQTLLIEGPPLHRFSAIKHFAPECSDDELLSVLEKQAQLLRGYWVPRSS 386

Query: 357 FLISKPGFEQLARDYVLILFSKNLNVRSSDVIVNFQGELGNSVRNFLRKFGLERCDINKT 416
            L    G E LAR+Y+L+ F K+L V+S ++     GELGN +++F+ +F LE+ D+   
Sbjct: 387 LLFPTGGIESLARNYILVRFHKSLTVKSDELRRLGGGELGNRMKHFVMQFALEKFDLKSK 446

Query: 417 MSQPMTYWKLRELPDESFKKLHPDVVKIQEDKFTALDHNVTNSISKFVKPKRGQSAMTNH 476
            +    YWK +ELPDESF K  P VVK QE+ F  L++ V + I      ++ +SA+TN 
Sbjct: 447 EN----YWKFKELPDESFIKEFPIVVKKQEEIFKILENEVNSIIGTLGGKRKLKSAITNS 502

Query: 477 SVKSELVKSANSDPRVTSLGGVPPGKMTMSNETRHALPIALKKLFQTHQVCSFQFIREEL 536
            V + L  S NSDPR TSLG  PP  MTMS+ETRHALPIALKKLFQTH+VCSFQ I +EL
Sbjct: 503 GVNNALFTSTNSDPRATSLGEDPPRSMTMSSETRHALPIALKKLFQTHKVCSFQLICQEL 562

Query: 537 RKMAVSKTTLSKGDSKIAVDAAHSLDGPEHELKAVISDVACDIHGYYVLKSSQDDPFRDV 596
           R +A+++T L KG SK++VDAA+SLD P+ ELKA++ +VACDIHG YVLKS+Q+DPFRDV
Sbjct: 563 RGLALAQTMLPKGGSKMSVDAANSLDVPQDELKAILGEVACDIHGCYVLKSAQNDPFRDV 622

Query: 597 VIDLLRGSGPNXXXXXXXXXXXXXXXXXXXVPNNEFTKVMKELCVSKGSVWVLKSGDGS 655
           VID+LRGSGPN                   VPNNE+ K + ELCVSKGS WVLKSGDGS
Sbjct: 623 VIDMLRGSGPNGKLKKAEILEAARRKLGRDVPNNEYIKAVSELCVSKGSFWVLKSGDGS 681


>Medtr5g026040.1 | DNA-directed RNA polymerase III subunit RPC5-like
           protein | LC | chr5:10683871-10679367 | 20130731
          Length = 487

 Score =  437 bits (1125), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/409 (52%), Positives = 283/409 (69%), Gaps = 31/409 (7%)

Query: 59  DPMDEDTVEDQIVREIDVFFTPSLDENTELYVLQYPLRPSWRPYEFEERCKEVRLKPISS 118
           +PMDED  ED +VREIDVFF+PS+D++ +LYV++YPLRPSWRPYE +E+C+EVRLKP S 
Sbjct: 105 NPMDEDNEEDTVVREIDVFFSPSIDDDIKLYVMEYPLRPSWRPYELDEQCEEVRLKPDSL 164

Query: 119 RVEIDLSIDLDSQNIDRDFADKYSITKQTLHTPWEPATANGCVVGLLTGDKLHLHPISAI 178
            V +DLS+DL+S  +D +F+++   TKQTL T W+P+ ANGC VGLL GDKL LHPI A+
Sbjct: 165 DVAVDLSVDLESSTVDEEFSNRLKYTKQTLSTTWKPSPANGCAVGLLMGDKLQLHPIHAV 224

Query: 179 VQLRPSLKHLNPGGSERTNIISTTVKIEGPSXXXXXXXXXXXXXXMEPPTEQKSDEVECW 238
           VQLRPS  +L+ GGSE+ N+ ++ ++                   MEP    KSD  ECW
Sbjct: 225 VQLRPSRHYLDSGGSEKNNVATSNMQ----------------NKQMEP---SKSDGDECW 265

Query: 239 VPLKYHDCKSDISSRYLQQMVAQESTPMNFTVSPYDYVTTLCPALSSNSLPKGPSKRYLL 298
           VPLKYH CKSDIS++Y QQMVA ES P+NF +S YDY+  LC  +S NSL KGPS R+LL
Sbjct: 266 VPLKYHSCKSDISAKYFQQMVAHESFPVNFEMSAYDYIAALCGGVSHNSLTKGPSTRHLL 325

Query: 299 SLPLTVEERLHKMFIEGPPLRRFNAIKHFAPEYSDKELLEYLQKHAVLLWGLWTPKSGFL 358
           SLP  VE+RL  + IEGPPL RF+AIK+FAPEYS++ELL +LQKHA+LL G W P+   L
Sbjct: 326 SLP--VEKRLETLLIEGPPLHRFSAIKYFAPEYSNEELLSFLQKHAILLQGYWVPRGSLL 383

Query: 359 ISKPGFEQLARDYVLILFSKNLNVRSSDVIVNFQGELGNSVRNFLRKFGLERCDINKTMS 418
               G E LAR+YVL+LF K+L VR +DV +       + V++F+++F  E+ D+ +   
Sbjct: 384 YPNGGVESLARNYVLVLFHKSLKVRFADVRI-----WSDRVKHFVKQFAFEQVDLKR--- 435

Query: 419 QPMTYWKLRELPDESFKKLHPDVVKIQEDKFTALDHNVTNSISKFVKPK 467
             + YWK +EL DESF K  P+VV  QE+ F  L+  VT  +    K K
Sbjct: 436 --VKYWKFKELSDESFIKEFPNVVIQQEEIFKILEEEVTKVVYDIGKHK 482