Miyakogusa Predicted Gene
- Lj5g3v1959090.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1959090.1 Non Characterized Hit- tr|I1NH10|I1NH10_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13293 PE,82.61,0,RRM,RNA
recognition motif domain; SMALL NUCLEAR RIBONUCLEOPROTEIN,NULL; U1
SMALL NUCLEAR RIBONUCLEOP,CUFF.56278.1
(252 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g099190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 373 e-103
Medtr6g034835.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 329 2e-90
Medtr1g099190.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 266 1e-71
Medtr1g099190.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 228 4e-60
Medtr3g091860.1 | RNA-binding protein with multiple splicing pro... 194 7e-50
Medtr3g091860.2 | RNA-binding protein with multiple splicing pro... 194 7e-50
Medtr3g091860.3 | RNA-binding protein with multiple splicing pro... 160 1e-39
Medtr3g104670.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 117 7e-27
Medtr3g104670.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 95 7e-20
Medtr3g104670.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 3e-10
Medtr3g104670.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 3e-10
Medtr5g074430.1 | U1 small nuclear ribonucleoprotein | HC | chr5... 49 6e-06
>Medtr1g099190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:44752922-44747555 | 20130731
Length = 252
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/255 (73%), Positives = 209/255 (81%), Gaps = 6/255 (2%)
Query: 1 MTDGYWNRQQAMYPSAGGILKRPRTEYDMSPSGLTSANDMHNFISRDNDRTGHQGIKDTK 60
M DG+WNRQQ P GG+LKRPRTEYD +PSG+TS N++HN+I+++N GHQ + DTK
Sbjct: 1 MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNN---GHQMLNDTK 57
Query: 61 TLGSAYDRYLQSAGLTSFNSGEASTIXXXXXXXXXXXXXXXXXXDPAVMGHLGG--GGHD 118
LGSAYDR+LQSAGLTSFNSGEAS I DP+ MGHL G GG D
Sbjct: 58 ILGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLSGVGGGPD 117
Query: 119 LARNGRNANYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVG 178
L+RNGR+ N+GGQLP+DAVSRPGPET+PLP DASSTLYVEGLPSD TKREVAHIFRPFVG
Sbjct: 118 LSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVG 177
Query: 179 YREVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELSPESSHLRLQFSR 238
YREVRLV KESKHRGGDPLILCFVDFANPACAATALSALQGYKVDE++PESS+LRLQFSR
Sbjct: 178 YREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYLRLQFSR 237
Query: 239 FPGPRSGA-GPRGKR 252
PG RSG GPRGKR
Sbjct: 238 SPGRRSGGPGPRGKR 252
>Medtr6g034835.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:12131803-12138897 | 20130731
Length = 261
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/250 (68%), Positives = 196/250 (78%), Gaps = 5/250 (2%)
Query: 1 MTDGYWNRQQAMYPSAGGILKRPRTEYDMSPSGLTSANDMHNFISRDNDRTGHQGIKDTK 60
M DGYWNRQQ++ P +G + KRPR +Y+M SGL S N+MH ++SR+ DR+GH +KD+K
Sbjct: 1 MADGYWNRQQSLLPHSG-LHKRPRPDYEMPASGLPSGNEMH-YLSREEDRSGHPMVKDSK 58
Query: 61 TLGSAYDRYLQSAGLTSFNSGEASTIXXXXXXXXXXXXXXXXXXDP-AVMGHLGGGGHDL 119
T+GSAYDRYLQ + SF SGEAST+ DP A++G GGGG DL
Sbjct: 59 TIGSAYDRYLQGQ-VPSFTSGEASTVGALGLQRGIGGLPNHSLSDPSAMIGRHGGGGPDL 117
Query: 120 ARNGRNANYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVGY 179
A NGR NYG Q P+D VSR GPE LPPDAS TLY+EGLPSDCT+REVAHIFRPFVGY
Sbjct: 118 APNGRGMNYGFQPPMDPVSRHGPEPALLPPDASPTLYIEGLPSDCTRREVAHIFRPFVGY 177
Query: 180 REVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELSPESSHLRLQFSRF 239
REVRLV+KE+KHR GDPLILCFVDFANPACAATALSALQGYKVDE++PESSHLRLQFSR+
Sbjct: 178 REVRLVSKEAKHR-GDPLILCFVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRY 236
Query: 240 PGPRSGAGPR 249
PGPRSG GPR
Sbjct: 237 PGPRSGGGPR 246
>Medtr1g099190.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:44752913-44747593 | 20130731
Length = 195
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/193 (68%), Positives = 151/193 (78%), Gaps = 5/193 (2%)
Query: 1 MTDGYWNRQQAMYPSAGGILKRPRTEYDMSPSGLTSANDMHNFISRDNDRTGHQGIKDTK 60
M DG+WNRQQ P GG+LKRPRTEYD +PSG+TS N++HN+I+++N GHQ + DTK
Sbjct: 1 MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNN---GHQMLNDTK 57
Query: 61 TLGSAYDRYLQSAGLTSFNSGEASTIXXXXXXXXXXXXXXXXXXDPAVMGHLGG--GGHD 118
LGSAYDR+LQSAGLTSFNSGEAS I DP+ MGHL G GG D
Sbjct: 58 ILGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLSGVGGGPD 117
Query: 119 LARNGRNANYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVG 178
L+RNGR+ N+GGQLP+DAVSRPGPET+PLP DASSTLYVEGLPSD TKREVAHIFRPFVG
Sbjct: 118 LSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVG 177
Query: 179 YREVRLVTKESKH 191
YREVRLV KESKH
Sbjct: 178 YREVRLVAKESKH 190
>Medtr1g099190.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:44752913-44747576 | 20130731
Length = 180
Score = 228 bits (582), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 116/178 (65%), Positives = 134/178 (75%), Gaps = 5/178 (2%)
Query: 1 MTDGYWNRQQAMYPSAGGILKRPRTEYDMSPSGLTSANDMHNFISRDNDRTGHQGIKDTK 60
M DG+WNRQQ P GG+LKRPRTEYD +PSG+TS N++HN+I+++N GHQ + DTK
Sbjct: 1 MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNN---GHQMLNDTK 57
Query: 61 TLGSAYDRYLQSAGLTSFNSGEASTIXXXXXXXXXXXXXXXXXXDPAVMGHLGG--GGHD 118
LGSAYDR+LQSAGLTSFNSGEAS I DP+ MGHL G GG D
Sbjct: 58 ILGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLSGVGGGPD 117
Query: 119 LARNGRNANYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRPF 176
L+RNGR+ N+GGQLP+DAVSRPGPET+PLP DASSTLYVEGLPSD TKREVA IF F
Sbjct: 118 LSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVARIFFIF 175
>Medtr3g091860.1 | RNA-binding protein with multiple splicing
protein | HC | chr3:41912150-41919016 | 20130731
Length = 228
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 157/257 (61%), Gaps = 34/257 (13%)
Query: 1 MTDGYW---NRQQAMYPSAGGILKRPRTEYDMSPSGLTSANDMHNFISRDNDRTGHQGIK 57
M+D YW QQ P+ G KRPRTEYD+S +++ N+ D+DR Q I+
Sbjct: 1 MSDAYWRYAESQQHAPPTIPG--KRPRTEYDVS-----GVHNLANYFPHDDDRGRLQVIR 53
Query: 58 DTKTLGSAYDRYLQSAGLTSFNSGEASTIXXXXXXXXXXXXXXXXXXDPAVMGHLGGGGH 117
DT++L ++Y+RYL++A ++S SG+++ D V H H
Sbjct: 54 DTESLDASYERYLRNA-ISSHGSGQSTRTI-----------------DGGVPSHSIDDSH 95
Query: 118 DLARNG--RNANYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRP 175
+ G R N Q+ + RP LPP A++TL+VEGLPS+CT+REVAHIFRP
Sbjct: 96 VTSMGGVDRRTNVKDQILELSGGRPDHS---LPPGATNTLFVEGLPSNCTRREVAHIFRP 152
Query: 176 FVGYREVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELSPESSHLRLQ 235
FVGY+EVRLV+KES+ GGDPL+LCFVDF +PA AATA+ AL GYK DEL S +LR Q
Sbjct: 153 FVGYKEVRLVSKESRQPGGDPLLLCFVDFVSPAHAATAMDALHGYKFDELDRNSVNLRFQ 212
Query: 236 FSRFPGPRSGAGPRGKR 252
F+R PG RSG G RGKR
Sbjct: 213 FARNPG-RSGGGHRGKR 228
>Medtr3g091860.2 | RNA-binding protein with multiple splicing
protein | HC | chr3:41912150-41919016 | 20130731
Length = 228
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 157/257 (61%), Gaps = 34/257 (13%)
Query: 1 MTDGYW---NRQQAMYPSAGGILKRPRTEYDMSPSGLTSANDMHNFISRDNDRTGHQGIK 57
M+D YW QQ P+ G KRPRTEYD+S +++ N+ D+DR Q I+
Sbjct: 1 MSDAYWRYAESQQHAPPTIPG--KRPRTEYDVS-----GVHNLANYFPHDDDRGRLQVIR 53
Query: 58 DTKTLGSAYDRYLQSAGLTSFNSGEASTIXXXXXXXXXXXXXXXXXXDPAVMGHLGGGGH 117
DT++L ++Y+RYL++A ++S SG+++ D V H H
Sbjct: 54 DTESLDASYERYLRNA-ISSHGSGQSTRTI-----------------DGGVPSHSIDDSH 95
Query: 118 DLARNG--RNANYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRP 175
+ G R N Q+ + RP LPP A++TL+VEGLPS+CT+REVAHIFRP
Sbjct: 96 VTSMGGVDRRTNVKDQILELSGGRPDHS---LPPGATNTLFVEGLPSNCTRREVAHIFRP 152
Query: 176 FVGYREVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELSPESSHLRLQ 235
FVGY+EVRLV+KES+ GGDPL+LCFVDF +PA AATA+ AL GYK DEL S +LR Q
Sbjct: 153 FVGYKEVRLVSKESRQPGGDPLLLCFVDFVSPAHAATAMDALHGYKFDELDRNSVNLRFQ 212
Query: 236 FSRFPGPRSGAGPRGKR 252
F+R PG RSG G RGKR
Sbjct: 213 FARNPG-RSGGGHRGKR 228
>Medtr3g091860.3 | RNA-binding protein with multiple splicing
protein | HC | chr3:41912150-41918988 | 20130731
Length = 243
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 134/224 (59%), Gaps = 33/224 (14%)
Query: 1 MTDGYW---NRQQAMYPSAGGILKRPRTEYDMSPSGLTSANDMHNFISRDNDRTGHQGIK 57
M+D YW QQ P+ G KRPRTEYD+S +++ N+ D+DR Q I+
Sbjct: 1 MSDAYWRYAESQQHAPPTIPG--KRPRTEYDVS-----GVHNLANYFPHDDDRGRLQVIR 53
Query: 58 DTKTLGSAYDRYLQSAGLTSFNSGEASTIXXXXXXXXXXXXXXXXXXDPAVMGHLGGGGH 117
DT++L ++Y+RYL++A ++S SG+++ D V H H
Sbjct: 54 DTESLDASYERYLRNA-ISSHGSGQST-----------------RTIDGGVPSHSIDDSH 95
Query: 118 DLARNG--RNANYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRP 175
+ G R N Q+ + RP LPP A++TL+VEGLPS+CT+REVAHIFRP
Sbjct: 96 VTSMGGVDRRTNVKDQILELSGGRPDHS---LPPGATNTLFVEGLPSNCTRREVAHIFRP 152
Query: 176 FVGYREVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQG 219
FVGY+EVRLV+KES+ GGDPL+LCFVDF +PA AATA+ AL G
Sbjct: 153 FVGYKEVRLVSKESRQPGGDPLLLCFVDFVSPAHAATAMDALHG 196
>Medtr3g104670.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48241678 | 20130731
Length = 229
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 74/105 (70%)
Query: 136 AVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVGYREVRLVTKESKHRGGD 195
++S+ + +P+ S+ L+V GLP DCT+REV H+FRPF+GY+++++V KE + G
Sbjct: 116 SISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDK 175
Query: 196 PLILCFVDFANPACAATALSALQGYKVDELSPESSHLRLQFSRFP 240
+I CFV+F P CA TA+ ALQGYK D+ P+S L+++F+ FP
Sbjct: 176 AMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIKFAHFP 220
>Medtr3g104670.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48244267 | 20130731
Length = 215
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%)
Query: 136 AVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVGYREVRLVTKESKHRGGD 195
++S+ + +P+ S+ L+V GLP DCT+REV H+FRPF+GY+++++V KE + G
Sbjct: 116 SISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDK 175
Query: 196 PLILCFVDFANPACAATALSALQ 218
+I CFV+F P CA TA+ ALQ
Sbjct: 176 AMIFCFVEFTEPKCALTAMEALQ 198
>Medtr3g104670.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48244805 | 20130731
Length = 178
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 136 AVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVGYREVRLVTKE 188
++S+ + +P+ S+ L+V GLP DCT+REV H+FRPF+GY+++++V KE
Sbjct: 116 SISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKE 168
>Medtr3g104670.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48244805 | 20130731
Length = 178
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 136 AVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVGYREVRLVTKE 188
++S+ + +P+ S+ L+V GLP DCT+REV H+FRPF+GY+++++V KE
Sbjct: 116 SISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKE 168
>Medtr5g074430.1 | U1 small nuclear ribonucleoprotein | HC |
chr5:31637698-31631234 | 20130731
Length = 233
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 152 SSTLYVEGLPSDCTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFANPACAA 211
++ L++E LP + T R + +F + G++EVRL+ E+K + FVDF + ++
Sbjct: 158 NNILFIENLPYETTGRMLEMLFEQYPGFKEVRLI--EAKPG------IAFVDFEDDGQSS 209
Query: 212 TALSALQGYKVDELSP 227
A+ ALQG+K+ +P
Sbjct: 210 MAMQALQGFKITPQNP 225