Miyakogusa Predicted Gene

Lj5g3v1957010.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1957010.2 tr|B9MUH7|B9MUH7_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_917210
PE=4,76.37,0,ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE
PROTEIN-RELATED,RFT1; Rft-1,RFT1,CUFF.56271.2
         (519 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g036550.1 | nuclear division RFT1-like protein | HC | chr4...   942   0.0  

>Medtr4g036550.1 | nuclear division RFT1-like protein | HC |
           chr4:13184308-13195590 | 20130731
          Length = 517

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/519 (87%), Positives = 490/519 (94%), Gaps = 2/519 (0%)

Query: 1   MSKDTDPANLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLFVTCVLF 60
           MSKD  P NLSRTFKYLLATQFLSRGIPFIFNTWIVRHLT+ DYA+YAVQFHLFVTCVLF
Sbjct: 1   MSKD--PTNLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTEADYAMYAVQFHLFVTCVLF 58

Query: 61  LSREGFRRACMRMDIRRDGTSMEEDVVKLMKVVWMSLPLGIFITIVACLLVFWWQDISYS 120
           LSREGFRRACMRMD++ DGTSMEE VVKL+KV WMS+PLGI +TIVACL VFWWQ ISY 
Sbjct: 59  LSREGFRRACMRMDMKSDGTSMEEGVVKLLKVAWMSVPLGILVTIVACLFVFWWQQISYF 118

Query: 121 TPHGQAILINGCACILELLAEPLYILSQNLVLLELRLMVETLATLSRCLTMYFLIVKQTG 180
           +P+GQA+LINGCACILELLAEPLYILSQNLVLLELRLMVET+AT SRCLTMYFLIV  TG
Sbjct: 119 SPYGQAVLINGCACILELLAEPLYILSQNLVLLELRLMVETVATFSRCLTMYFLIVNLTG 178

Query: 181 MEKSIIFALSQSAYGACLFLGYWGYMVLLRKFRYSYLFPFRERKVIGFDRQLSKMCMLFT 240
           +EKSIIFALSQ+AYGACLFLGYWGY++L RKFRYSYLFPFRE +V GFD+QLSKMC+LFT
Sbjct: 179 LEKSIIFALSQAAYGACLFLGYWGYLLLYRKFRYSYLFPFREGRVFGFDQQLSKMCILFT 238

Query: 241 FQSYRKLILQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLLFLPFEESSYTTFARFAS 300
           FQS+RKLILQEGEK+VLVW DTPYNQAVYGLVDKLGSLVVRL+FLPFEESSYTTFAR AS
Sbjct: 239 FQSFRKLILQEGEKIVLVWFDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYTTFARSAS 298

Query: 301 GQYPGKSKKLGNCLTESLKLVLLIGLVFIAFGPSYSYSLIRLLYGQKWSDGEAATALRYY 360
           G+Y GK K LG+CLTESLKLVLLIG+VF+AFGPSYSYSLIRLLYG+KWSDGEA+T LRYY
Sbjct: 299 GEYQGKHKTLGSCLTESLKLVLLIGVVFMAFGPSYSYSLIRLLYGKKWSDGEASTVLRYY 358

Query: 361 CFYVIVLAMNGTSEAFMHAVATESQLKRSNDSLLVFSLIYIALNVLLIKLSGAVGLIIAN 420
           CFYVIVLAMNGTSEAFMHAVATESQLKRSNDSLLVFSLI + LNVLLIKLSG+VGLI+AN
Sbjct: 359 CFYVIVLAMNGTSEAFMHAVATESQLKRSNDSLLVFSLISVVLNVLLIKLSGSVGLIMAN 418

Query: 421 SLNMTLRILYSAIFIKNYFKGSSSFSFCDCLPSGWIILLLSGVITLISENVFLDQDNFWP 480
           SLNMTLRILYSA+FIK YFKGSSSFSF  CLPSGWIILLLSGVITL+SENVFLDQDNFWP
Sbjct: 419 SLNMTLRILYSAMFIKEYFKGSSSFSFRGCLPSGWIILLLSGVITLVSENVFLDQDNFWP 478

Query: 481 SFMIHFSVGLACFCVSAYVIYCREKPFIKRITRFRDHSD 519
           +FMIHFSVGLACFCVS+YVIYCREKPFIK+I RFRDHSD
Sbjct: 479 TFMIHFSVGLACFCVSSYVIYCREKPFIKKIIRFRDHSD 517