Miyakogusa Predicted Gene
- Lj5g3v1950960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1950960.1 Non Characterized Hit- tr|I1LDH1|I1LDH1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48015
PE,76.92,0,PORR,Plant organelle RNA recognition domain; seg,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NU,CUFF.56233.1
(418 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 573 e-163
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 573 e-163
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 568 e-162
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 568 e-162
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 568 e-162
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 568 e-162
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 548 e-156
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 466 e-131
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 462 e-130
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 203 2e-52
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 203 2e-52
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 202 5e-52
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 202 5e-52
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 167 1e-41
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 162 8e-40
Medtr7g009010.1 | plant organelle RNA recognition domain protein... 161 9e-40
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 159 5e-39
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 147 1e-35
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 135 7e-32
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 134 1e-31
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 133 3e-31
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 133 3e-31
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 133 3e-31
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 132 8e-31
Medtr2g017885.1 | plant organelle RNA recognition domain protein... 129 6e-30
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 122 5e-28
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 122 6e-28
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 119 7e-27
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 111 1e-24
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 111 2e-24
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 110 3e-24
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 100 3e-21
Medtr8g102038.1 | plant organelle RNA recognition domain protein... 77 3e-14
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 573 bits (1477), Expect = e-163, Method: Compositional matrix adjust.
Identities = 299/402 (74%), Positives = 327/402 (81%), Gaps = 9/402 (2%)
Query: 24 RRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGK 83
+R +CLWSSKKDPDLE+ALSRN+RW++NNQIKNIILRYPNN+IPI+ LQKKFKTLDLQGK
Sbjct: 17 KRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGK 76
Query: 84 ALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLN 143
ALNW+SKYP CF HQ LTKRMM LV EE SLKDSLE VFV RLAKLLM+S N LN
Sbjct: 77 ALNWISKYPSCFQFHQDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLN 136
Query: 144 VLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGL 203
V+KINE K + GFPDDYLI IV KYPDLFRI +ESGRRSSM VEL+ W+PDFAVS VE L
Sbjct: 137 VMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEAL 196
Query: 204 ARKNGDGAEPGFSCLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLV 263
A KN G E FSC LP SWVKS E+F +FE VPYVSPYSDPRGLVEGSKEMEKRNVGLV
Sbjct: 197 AMKN--GVEVNFSCCLPSSWVKSLEKFREFELVPYVSPYSDPRGLVEGSKEMEKRNVGLV 254
Query: 264 HELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVG 323
HELLSLTLWKK SI+KLGHF+REF LPD++NVLLLKHPGIFYVSNKY+IYTVLLRE YVG
Sbjct: 255 HELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG 314
Query: 324 SQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGVPFARADE--TKGGXXX 381
SQLV+KDPLVVVKEKFGE+MQEGLHEYNQRRR+ N+EKRR KG+P R DE KG
Sbjct: 315 SQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKRRNKGLPLNRVDEDHMKGRRRR 374
Query: 382 XXXXX-----XXXXXXXXXVRGLLDPEERKRFYKALFDDDDS 418
+ GLLDPEERKRFYK LFDDD S
Sbjct: 375 RNREVFDEDDEVERENGNKLGGLLDPEERKRFYKVLFDDDGS 416
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 573 bits (1476), Expect = e-163, Method: Compositional matrix adjust.
Identities = 299/402 (74%), Positives = 327/402 (81%), Gaps = 9/402 (2%)
Query: 24 RRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGK 83
+R +CLWSSKKDPDLE+ALSRN+RW++NNQIKNIILRYPNN+IPI+ LQKKFKTLDLQGK
Sbjct: 17 KRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGK 76
Query: 84 ALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLN 143
ALNW+SKYP CF HQ LTKRMM LV EE SLKDSLE VFV RLAKLLM+S N LN
Sbjct: 77 ALNWISKYPSCFQFHQDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLN 136
Query: 144 VLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGL 203
V+KINE K + GFPDDYLI IV KYPDLFRI +ESGRRSSM VEL+ W+PDFAVS VE L
Sbjct: 137 VMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEAL 196
Query: 204 ARKNGDGAEPGFSCLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLV 263
A KN G E FSC LP SWVKS E+F +FE VPYVSPYSDPRGLVEGSKEMEKRNVGLV
Sbjct: 197 AMKN--GVEVNFSCCLPSSWVKSLEKFREFELVPYVSPYSDPRGLVEGSKEMEKRNVGLV 254
Query: 264 HELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVG 323
HELLSLTLWKK SI+KLGHF+REF LPD++NVLLLKHPGIFYVSNKY+IYTVLLRE YVG
Sbjct: 255 HELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG 314
Query: 324 SQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGVPFARADE--TKGGXXX 381
SQLV+KDPLVVVKEKFGE+MQEGLHEYNQRRR+ N+EKRR KG+P R DE KG
Sbjct: 315 SQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKRRNKGLPLNRVDEDHMKGRRRR 374
Query: 382 XXXXX-----XXXXXXXXXVRGLLDPEERKRFYKALFDDDDS 418
+ GLLDPEERKRFYK LFDDD S
Sbjct: 375 RNREVFDEDDEVERENGNKLGGLLDPEERKRFYKVLFDDDGS 416
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/402 (74%), Positives = 327/402 (81%), Gaps = 9/402 (2%)
Query: 24 RRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGK 83
+R +CLWSSKKDPDLE+ALSRN+RW++NNQIKNIILRYPNN+IPI+ LQKKFKTLDLQGK
Sbjct: 17 KRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGK 76
Query: 84 ALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLN 143
ALNW+SKYP CF HQ LTKRMM LV EE SLKDSLE VFV RLAKLLM+S N LN
Sbjct: 77 ALNWISKYPSCFQFHQDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLN 136
Query: 144 VLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGL 203
V+KINE K + GFPDDYLI IV KYPDLFRI +ESGRRSSM VEL+ W+PDFAVS VE L
Sbjct: 137 VMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEAL 196
Query: 204 ARKNGDGAEPGFSCLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLV 263
A KN G E FSC LP SWVKS E+FH+FE VPYVSPYSDPRGLVEGSKEMEKRNVGLV
Sbjct: 197 AMKN--GVEVNFSCCLPSSWVKSLEKFHEFELVPYVSPYSDPRGLVEGSKEMEKRNVGLV 254
Query: 264 HELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVG 323
HELLSLTLWKK SI+KLGHF+REF LPD++NVLLLKHPGIFYVSNKY+IYTVLLRE YVG
Sbjct: 255 HELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG 314
Query: 324 SQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGVPFARADE--TKGGXXX 381
SQLV+KDPLVVVKEKFGE+MQEGLHEYNQRRR+ N+EK+R KG+P R DE KG
Sbjct: 315 SQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDEDHMKGRRRR 374
Query: 382 XXXXXX-----XXXXXXXXVRGLLDPEERKRFYKALFDDDDS 418
+ GLLDPEERKRFYK LF DD S
Sbjct: 375 RNREVSDEDDEVERENGNKLGGLLDPEERKRFYKVLFYDDGS 416
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/402 (74%), Positives = 327/402 (81%), Gaps = 9/402 (2%)
Query: 24 RRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGK 83
+R +CLWSSKKDPDLE+ALSRN+RW++NNQIKNIILRYPNN+IPI+ LQKKFKTLDLQGK
Sbjct: 17 KRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGK 76
Query: 84 ALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLN 143
ALNW+SKYP CF HQ LTKRMM LV EE SLKDSLE VFV RLAKLLM+S N LN
Sbjct: 77 ALNWISKYPSCFQFHQDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLN 136
Query: 144 VLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGL 203
V+KINE K + GFPDDYLI IV KYPDLFRI +ESGRRSSM VEL+ W+PDFAVS VE L
Sbjct: 137 VMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEAL 196
Query: 204 ARKNGDGAEPGFSCLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLV 263
A KN G E FSC LP SWVKS E+FH+FE VPYVSPYSDPRGLVEGSKEMEKRNVGLV
Sbjct: 197 AMKN--GVEVNFSCCLPSSWVKSLEKFHEFELVPYVSPYSDPRGLVEGSKEMEKRNVGLV 254
Query: 264 HELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVG 323
HELLSLTLWKK SI+KLGHF+REF LPD++NVLLLKHPGIFYVSNKY+IYTVLLRE YVG
Sbjct: 255 HELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG 314
Query: 324 SQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGVPFARADE--TKGGXXX 381
SQLV+KDPLVVVKEKFGE+MQEGLHEYNQRRR+ N+EK+R KG+P R DE KG
Sbjct: 315 SQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDEDHMKGRRRR 374
Query: 382 XXXXXX-----XXXXXXXXVRGLLDPEERKRFYKALFDDDDS 418
+ GLLDPEERKRFYK LF DD S
Sbjct: 375 RNREVSDEDDEVERENGNKLGGLLDPEERKRFYKVLFYDDGS 416
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/402 (74%), Positives = 327/402 (81%), Gaps = 9/402 (2%)
Query: 24 RRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGK 83
+R +CLWSSKKDPDLE+ALSRN+RW++NNQIKNIILRYPNN+IPI+ LQKKFKTLDLQGK
Sbjct: 17 KRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGK 76
Query: 84 ALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLN 143
ALNW+SKYP CF HQ LTKRMM LV EE SLKDSLE VFV RLAKLLM+S N LN
Sbjct: 77 ALNWISKYPSCFQFHQDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLN 136
Query: 144 VLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGL 203
V+KINE K + GFPDDYLI IV KYPDLFRI +ESGRRSSM VEL+ W+PDFAVS VE L
Sbjct: 137 VMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEAL 196
Query: 204 ARKNGDGAEPGFSCLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLV 263
A KN G E FSC LP SWVKS E+FH+FE VPYVSPYSDPRGLVEGSKEMEKRNVGLV
Sbjct: 197 AMKN--GVEVNFSCCLPSSWVKSLEKFHEFELVPYVSPYSDPRGLVEGSKEMEKRNVGLV 254
Query: 264 HELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVG 323
HELLSLTLWKK SI+KLGHF+REF LPD++NVLLLKHPGIFYVSNKY+IYTVLLRE YVG
Sbjct: 255 HELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG 314
Query: 324 SQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGVPFARADE--TKGGXXX 381
SQLV+KDPLVVVKEKFGE+MQEGLHEYNQRRR+ N+EK+R KG+P R DE KG
Sbjct: 315 SQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDEDHMKGRRRR 374
Query: 382 XXXXXX-----XXXXXXXXVRGLLDPEERKRFYKALFDDDDS 418
+ GLLDPEERKRFYK LF DD S
Sbjct: 375 RNREVSDEDDEVERENGNKLGGLLDPEERKRFYKVLFYDDGS 416
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/402 (74%), Positives = 327/402 (81%), Gaps = 9/402 (2%)
Query: 24 RRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGK 83
+R +CLWSSKKDPDLE+ALSRN+RW++NNQIKNIILRYPNN+IPI+ LQKKFKTLDLQGK
Sbjct: 17 KRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGK 76
Query: 84 ALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLN 143
ALNW+SKYP CF HQ LTKRMM LV EE SLKDSLE VFV RLAKLLM+S N LN
Sbjct: 77 ALNWISKYPSCFQFHQDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCLN 136
Query: 144 VLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGL 203
V+KINE K + GFPDDYLI IV KYPDLFRI +ESGRRSSM VEL+ W+PDFAVS VE L
Sbjct: 137 VMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEAL 196
Query: 204 ARKNGDGAEPGFSCLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLV 263
A KN G E FSC LP SWVKS E+FH+FE VPYVSPYSDPRGLVEGSKEMEKRNVGLV
Sbjct: 197 AMKN--GVEVNFSCCLPSSWVKSLEKFHEFELVPYVSPYSDPRGLVEGSKEMEKRNVGLV 254
Query: 264 HELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVG 323
HELLSLTLWKK SI+KLGHF+REF LPD++NVLLLKHPGIFYVSNKY+IYTVLLRE YVG
Sbjct: 255 HELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG 314
Query: 324 SQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGVPFARADE--TKGGXXX 381
SQLV+KDPLVVVKEKFGE+MQEGLHEYNQRRR+ N+EK+R KG+P R DE KG
Sbjct: 315 SQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDEDHMKGRRRR 374
Query: 382 XXXXXX-----XXXXXXXXVRGLLDPEERKRFYKALFDDDDS 418
+ GLLDPEERKRFYK LF DD S
Sbjct: 375 RNREVSDEDDEVERENGNKLGGLLDPEERKRFYKVLFYDDGS 416
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 290/402 (72%), Positives = 321/402 (79%), Gaps = 9/402 (2%)
Query: 24 RRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGK 83
+R +CLWSSKKDP LE+ALSRN+RW++NNQIKNIILRYPNN+IPI LQKKFKTLDLQGK
Sbjct: 19 KRHYCLWSSKKDPYLESALSRNKRWIINNQIKNIILRYPNNQIPILTLQKKFKTLDLQGK 78
Query: 84 ALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLN 143
ALNW+SKYP CF HQ LTKRMM LV EE SLKDSLE VFV RLAKLLM+S N LN
Sbjct: 79 ALNWISKYPSCFQFHQDHVLLTKRMMKLVHEEQSLKDSLESVFVLRLAKLLMLSLNNCLN 138
Query: 144 VLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGL 203
V+KINE K +FG PDDYLI IV KY DLFRI +ESGRRSSM VEL+ W+PDFAVS VE L
Sbjct: 139 VMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEAL 198
Query: 204 ARKNGDGAEPGFSCLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLV 263
A KN G E FSC LP SWVKS E+F +FE VPYVSPYSDPR LVEGSKEMEKRN+GLV
Sbjct: 199 AMKN--GVEVNFSCCLPSSWVKSLEKFREFELVPYVSPYSDPRRLVEGSKEMEKRNLGLV 256
Query: 264 HELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVG 323
HELLSLTLWKK SI+KLGHF+REF LPD++NVLLLKH GIFYVSNKY+IYTVLLRE YVG
Sbjct: 257 HELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHHGIFYVSNKYRIYTVLLREGYVG 316
Query: 324 SQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGVPFARADE--TKGGXXX 381
SQLV+K+PLV VKEKFG++MQEGLHEYNQRRR+ N+EK+R KG+P R DE KG
Sbjct: 317 SQLVDKNPLVAVKEKFGKIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDEDHMKGRRRR 376
Query: 382 XXXXXX-----XXXXXXXXVRGLLDPEERKRFYKALFDDDDS 418
+ GLLDPEERKRFYK LFDDD S
Sbjct: 377 RNREVSDEDDEVERENGNKLGGLLDPEERKRFYKVLFDDDGS 418
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 466 bits (1200), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/342 (71%), Positives = 265/342 (77%), Gaps = 9/342 (2%)
Query: 84 ALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLN 143
+LNW+SKYP CF HQ LTKRMM LV EE SLKDSLE VFV RLAKLLM S N LN
Sbjct: 34 SLNWISKYPSCFQFHQDHVLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMFSLNNCLN 93
Query: 144 VLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGL 203
V+KINE K + GFPDDYLI IV KYPDLFRI +ESGR SSM VEL+ W+PDF+VS V L
Sbjct: 94 VMKINEIKNSLGFPDDYLIGIVMKYPDLFRIRNESGRISSMVVELMKWNPDFSVSEVAAL 153
Query: 204 ARKNGDGAEPGFSCLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLV 263
A KNG E FS LP SWVKS E+F +FE VPYVSPYSDPRGLVEGSKEMEKRNVGLV
Sbjct: 154 AMKNG--VEVNFSYCLPSSWVKSLEKFREFELVPYVSPYSDPRGLVEGSKEMEKRNVGLV 211
Query: 264 HELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVG 323
HELLSLTLWKK SI+KLGHF+REF LPD++NVLLLKHPGIFYVSNKY+IYTVLLRE YVG
Sbjct: 212 HELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVG 271
Query: 324 SQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGVPFARADE--TKGGXXX 381
SQLV+KDPLVVVKEKFGE+MQEGLHEYNQRRR+ N+EKRR KG+P R DE KG
Sbjct: 272 SQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKRRNKGLPLNRVDEDHMKGRRRR 331
Query: 382 XXXXX-----XXXXXXXXXVRGLLDPEERKRFYKALFDDDDS 418
+ GLLDPEERKRFYK LFDDD S
Sbjct: 332 RNREVFDEDDEVERENGNKLGGLLDPEERKRFYKVLFDDDGS 373
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 462 bits (1190), Expect = e-130, Method: Compositional matrix adjust.
Identities = 256/392 (65%), Positives = 288/392 (73%), Gaps = 34/392 (8%)
Query: 24 RRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGK 83
+R +CLWSSKKDP LE+ALSRN+RW++NNQIKNIILRYPNN+IPI LQKKFKTLDLQGK
Sbjct: 19 KRHYCLWSSKKDPYLESALSRNKRWIINNQIKNIILRYPNNQIPILTLQKKFKTLDLQGK 78
Query: 84 ALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLN 143
ALNW+SKYP CF HQ LTKRMM LV EE SLKDSLE VFV RLAKLLM+S N LN
Sbjct: 79 ALNWISKYPSCFQFHQDHVLLTKRMMKLVHEEQSLKDSLESVFVLRLAKLLMLSLNNCLN 138
Query: 144 VLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGL 203
V+KINE K +FG PDDYLI IV KY DLFRI +ESGRRSSM VEL+ W+PDFAVS VE L
Sbjct: 139 VMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEAL 198
Query: 204 ARKNGDGAEPGFSCLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLV 263
A KN G E FSC LP SWVKS E+F +FE VPYVSPYSDPR LVEGSKEMEKRN+GLV
Sbjct: 199 AMKN--GVEVNFSCCLPSSWVKSLEKFREFELVPYVSPYSDPRRLVEGSKEMEKRNLGLV 256
Query: 264 HELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVG 323
HELLSLTLWKK SI+KLGHF++ G+F+ L+RE YVG
Sbjct: 257 HELLSLTLWKKISIMKLGHFKK----------------GVFF---------CLIREGYVG 291
Query: 324 SQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGVPFARADE--TKGGXXX 381
SQLV+K+PLV VKEKFG++MQEGLHEYNQRRR+ N+EK+R KG+P R DE KG
Sbjct: 292 SQLVDKNPLVAVKEKFGKIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDEDHMKGRRRR 351
Query: 382 XXXXXX-----XXXXXXXXVRGLLDPEERKRF 408
+ GLLDPEERKR
Sbjct: 352 RNREVSDEDDEVERENGNKLGGLLDPEERKRM 383
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 198/362 (54%), Gaps = 40/362 (11%)
Query: 8 IHHHLHPTASPQGQWLRRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIP 67
IH H +S + W +KD L+ A+ +++R+ ++ +L P IP
Sbjct: 21 IHVHTRLISSLKVVW----------RKDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIP 70
Query: 68 IEALQKKFKTLDLQGKALNWVSKYPCCFDVHQRRC----------RLTKRMMSLVDEELS 117
+ L+K+ + + L+ K ++++ P FDV+ R R++ ++ + EE
Sbjct: 71 LRYLEKRRQRMRLKVKIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKR 130
Query: 118 LKDSLEPVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSE 177
+ EP+ V +L KLLMMS +K ++ K+ KR FGFP+D+L+ +VP+YP+ FR+
Sbjct: 131 IYKENEPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGL 190
Query: 178 SGRRSSMEVELLHWDPDFAVSAVEGLA----RKNGDGAEPGFSCLLP---------LSWV 224
G S +EL++W+P+FA S +E A R G P F+ LP W+
Sbjct: 191 PGEGKSF-LELVNWNPEFAKSVIERRAEEESRATGIRVRPSFNVKLPPGFVLKKEMREWI 249
Query: 225 KSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFR 284
+ W + YVSPY D L + S+EMEKR+VG+ HELLSL+L+K+ + LG F
Sbjct: 250 RDWM------ELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFC 303
Query: 285 REFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQ 344
E+ + + +H GIFY+S K I T +LREAY G +L++ DPL+ +K++F EL++
Sbjct: 304 DEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDRFAELLK 363
Query: 345 EG 346
EG
Sbjct: 364 EG 365
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 198/362 (54%), Gaps = 40/362 (11%)
Query: 8 IHHHLHPTASPQGQWLRRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIP 67
IH H +S + W +KD L+ A+ +++R+ ++ +L P IP
Sbjct: 21 IHVHTRLISSLKVVW----------RKDQSLDQAIEQDKRFKQCARVVKEVLNEPGQVIP 70
Query: 68 IEALQKKFKTLDLQGKALNWVSKYPCCFDVHQRRC----------RLTKRMMSLVDEELS 117
+ L+K+ + + L+ K ++++ P FDV+ R R++ ++ + EE
Sbjct: 71 LRYLEKRRQRMRLKVKIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKR 130
Query: 118 LKDSLEPVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSE 177
+ EP+ V +L KLLMMS +K ++ K+ KR FGFP+D+L+ +VP+YP+ FR+
Sbjct: 131 IYKENEPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGL 190
Query: 178 SGRRSSMEVELLHWDPDFAVSAVEGLA----RKNGDGAEPGFSCLLP---------LSWV 224
G S +EL++W+P+FA S +E A R G P F+ LP W+
Sbjct: 191 PGEGKSF-LELVNWNPEFAKSVIERRAEEESRATGIRVRPSFNVKLPPGFVLKKEMREWI 249
Query: 225 KSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFR 284
+ W + YVSPY D L + S+EMEKR+VG+ HELLSL+L+K+ + LG F
Sbjct: 250 RDWM------ELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFC 303
Query: 285 REFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQ 344
E+ + + +H GIFY+S K I T +LREAY G +L++ DPL+ +K++F EL++
Sbjct: 304 DEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDRFAELLK 363
Query: 345 EG 346
EG
Sbjct: 364 EG 365
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 190/337 (56%), Gaps = 30/337 (8%)
Query: 33 KKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGKALNWVSKYP 92
+KDP L+ A+ +++R+ ++ +L P IP+ L+K+ + + L+ K ++++ P
Sbjct: 36 RKDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRLKVKIDTFLNQNP 95
Query: 93 CCFDVHQRRC----------RLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRL 142
FDV+ R R++ ++ ++EE + EP+ V +L KLLMMS +K +
Sbjct: 96 FLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCKLLMMSKDKVV 155
Query: 143 NVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEG 202
+ K+ KR FGFP+D+L+ +VP+YP+ FR+ G S +EL++W+P+FA S VE
Sbjct: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSF-LELVNWNPEFAKSVVEK 214
Query: 203 LARK----NGDGAEPGFSCLLP---------LSWVKSWERFHKFESVPYVSPYSDPRGLV 249
A + G P F+ LP W++ W + YVSPY D
Sbjct: 215 RAEEESSATGIRVRPSFNVKLPPGFVLKKEMREWIRDWM------ELDYVSPYEDVSHFE 268
Query: 250 EGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNK 309
+ S+EMEKR+VG+ HELLSL+L+K+ + LG F E+ + + +H GIFY+S K
Sbjct: 269 QSSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYLSLK 328
Query: 310 YKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQEG 346
I T +LREAY G +L+ DPL+ +K++F EL+ EG
Sbjct: 329 GGIETAMLREAYEGDKLIHIDPLLQIKDRFAELLNEG 365
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 190/337 (56%), Gaps = 30/337 (8%)
Query: 33 KKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGKALNWVSKYP 92
+KDP L+ A+ +++R+ ++ +L P IP+ L+K+ + + L+ K ++++ P
Sbjct: 36 RKDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRLKVKIDTFLNQNP 95
Query: 93 CCFDVHQRRC----------RLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRL 142
FDV+ R R++ ++ ++EE + EP+ V +L KLLMMS +K +
Sbjct: 96 FLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCKLLMMSKDKVV 155
Query: 143 NVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEG 202
+ K+ KR FGFP+D+L+ +VP+YP+ FR+ G S +EL++W+P+FA S VE
Sbjct: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSF-LELVNWNPEFAKSVVEK 214
Query: 203 LARK----NGDGAEPGFSCLLP---------LSWVKSWERFHKFESVPYVSPYSDPRGLV 249
A + G P F+ LP W++ W + YVSPY D
Sbjct: 215 RAEEESSATGIRVRPSFNVKLPPGFVLKKEMREWIRDWM------ELDYVSPYEDVSHFE 268
Query: 250 EGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNK 309
+ S+EMEKR+VG+ HELLSL+L+K+ + LG F E+ + + +H GIFY+S K
Sbjct: 269 QSSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYLSLK 328
Query: 310 YKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQEG 346
I T +LREAY G +L+ DPL+ +K++F EL+ EG
Sbjct: 329 GGIETAMLREAYEGDKLIHIDPLLQIKDRFAELLNEG 365
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 183/335 (54%), Gaps = 28/335 (8%)
Query: 33 KKDPDLETALSRNRRWVVNNQIKNIIL---RYPNNEIPIEALQKKFKTLDLQG--KALNW 87
K+ +LE A +W + ++I +I + P IP+ +L K + L + ++
Sbjct: 37 KRVHELEAA---TEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDF 93
Query: 88 VSKYPCCFDVHQRR-----CRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRL 142
+ K P F++++ R C LT++ L++E + + E + +LLMMS +KR+
Sbjct: 94 LRKTPKLFELYKDRNGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRV 153
Query: 143 NVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEG 202
+ KI F+R+FG P D+ V KYP LFR+V S +EL+ W+ ++A++ +E
Sbjct: 154 QLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEF-LELVSWNSEWAITEIEK 212
Query: 203 LARKNGDGAE-----PGFSCL-LPLSWVKSWERFHK--------FESVPYVSPYSDPRGL 248
+ +G PG L PL + +++R H F+ Y+SPY+D +GL
Sbjct: 213 KNKMILEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKIKMFQERTYLSPYADAKGL 272
Query: 249 VEGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSN 308
GS E +KR V ++HELLS T+ K+ L HFR E ++P +L LLLKH GIFYVS
Sbjct: 273 KPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSE 332
Query: 309 KYKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELM 343
+ K ++V L EAY GS+L+EK PL + +EK L+
Sbjct: 333 RGKRFSVFLTEAYEGSELIEKSPLFLWREKLLSLV 367
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 162 bits (409), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 174/316 (55%), Gaps = 27/316 (8%)
Query: 53 QIKNIILRYPNNEIPIEALQKKFKTLDL-QGKALNWVSKYPCCFDVHQRR------CRLT 105
+ +N+IL PN IPI L+ + + + +A+ ++ K+ F++ + CRLT
Sbjct: 69 KFQNLILSEPNQSIPISRLETQAHRIGFTRHEAIAFILKFLHVFEIFEHPVQRILFCRLT 128
Query: 106 KRMMSLVDEE-LSLKDSLEPVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIRI 164
++ + +++E L+L D +E V RL K++MMS RL + + + G PDD+ +
Sbjct: 129 RKAILQIEQERLALADQVERA-VTRLRKMIMMSNGLRLRLEHVRIARSALGLPDDFEYSV 187
Query: 165 VPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEG----LARKNGDGAEP-GFSCLL 219
V +YP+ FR+V R+ +EL+ +DP A A+E + R+ G AE FS L+
Sbjct: 188 VLRYPEFFRLVDAKETRNKY-IELVEFDPKLAKCAIEDARERVYRERGSEAEDIRFSFLI 246
Query: 220 ---PLSWVKSWERFH--KFESVPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLT 270
P + + R K++ +PY SPY D G +E K MEKR V +HELLSLT
Sbjct: 247 DFPPGFKISKYFRIAMWKWQRLPYWSPYEDVLGYDLRSIEAQKRMEKRAVATIHELLSLT 306
Query: 271 LWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVS---NKYKIYTVLLREAYVGSQLV 327
+ KK ++ ++ HFR LP +L LL+H GIFYVS N K++TV LREAY +LV
Sbjct: 307 VEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYSKGELV 366
Query: 328 EKDPLVVVKEKFGELM 343
E + L + + K EL+
Sbjct: 367 EPNDLYLARRKLVELV 382
>Medtr7g009010.1 | plant organelle RNA recognition domain protein |
LC | chr7:1887874-1884516 | 20130731
Length = 142
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 91/117 (77%)
Query: 73 KKFKTLDLQGKALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAK 132
KKFKTLDLQGKA NW+SKYP F + LTKRM+ LV EE SLKDSLE VFV+RLAK
Sbjct: 25 KKFKTLDLQGKAFNWISKYPSYFQFQKDHVLLTKRMIELVHEEQSLKDSLESVFVQRLAK 84
Query: 133 LLMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELL 189
L M+S N LN +KINE K + GFPDDYLI+IV KYPDLFRI +ESGRRSS VEL+
Sbjct: 85 LFMLSLNNCLNAMKINEIKNSLGFPDDYLIQIVAKYPDLFRIRNESGRRSSTVVELM 141
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 179/334 (53%), Gaps = 28/334 (8%)
Query: 33 KKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTL--DLQGKALNWVSK 90
+K+ + + ++++ +++ I++ P + ++ L K + L D + K + + +
Sbjct: 87 RKELPFDNVIQKDKKLKFVLKVRKILVSKPTRVMSLQELGKYRRELGLDKKRKLIVILRR 146
Query: 91 YPCCFDVHQRRC-----RLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLNVL 145
+P F++ + C ++T L EEL +++ +E V V +L KLLMM KR+ +
Sbjct: 147 FPGVFEIVEDGCYSLKFKMTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMPLEKRILLE 206
Query: 146 KINEFKRNFGFPDDYLIRIVPKYPDLFRIV-SESGRRSSMEVELLHWDPDFAVSAVEGLA 204
KI + G P ++ I +YP+ F++V +E G +EL HWDP AVSA E A
Sbjct: 207 KIGHLANDLGLPREFRDTICHRYPEFFKVVQTERG----PALELTHWDPHLAVSAAELSA 262
Query: 205 RKNG-----------DGAEPGFSCL-LP--LSWVKSWER-FHKFESVPYVSPYSDPRGLV 249
+N D A P F+ + LP LS K R +F +PY+SPYSD +
Sbjct: 263 EENRIREVEEQNLIIDRA-PKFNRVKLPKGLSLSKGEMRKIMQFRDIPYISPYSDFSMIG 321
Query: 250 EGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNK 309
+ E EK G++HE+LSLTL K+ + HFR EF +L +L++HP +FY+S K
Sbjct: 322 LNTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLK 381
Query: 310 YKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELM 343
+V LREAY SQLV+KD L++VKEK L+
Sbjct: 382 GDRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLV 415
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 170/318 (53%), Gaps = 27/318 (8%)
Query: 51 NNQIKNIILRYPNNEIPIEALQKKFKTLDL-QGKALNWVSKYPCCFDVHQRR------CR 103
++QI +IL N IPI L+ + + +A ++ K+P F++ + CR
Sbjct: 32 SSQISELILSELNQSIPIPRLETLAHRIGFTRHEASAFILKFPYVFEIFEHLVQRILFCR 91
Query: 104 LTKRMMSLVDEE-LSLKDSLEPVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLI 162
LT++ + +++E L+L D + V L K++MMS RL + + + G DD+
Sbjct: 92 LTRKTILQIEQERLALADQVGRT-VTCLRKMIMMSNGLRLRLEHVRIARSALGLRDDFEY 150
Query: 163 RIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEG----LARKNGDGAEP-GFSC 217
+V +YP+ FR+V R+ +EL+ +DP A A+E + R+ G AE FS
Sbjct: 151 LVVLRYPEFFRLVDAKETRNKY-IELVEFDPKLATCAIEDARERVYRERGSEAEDIRFSF 209
Query: 218 L---LPLSWVKSWERFH--KFESVPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLS 268
L LP + + R K++S+PY SPY D G E K MEKR V +HELLS
Sbjct: 210 LIDFLPGFKISKYFRIAMWKWQSLPYWSPYEDVWGYDLRSPEAQKRMEKRAVATIHELLS 269
Query: 269 LTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVS---NKYKIYTVLLREAYVGSQ 325
LT+ KK ++ ++ HF+ LP +L LL+H GIFYVS N K++TV LREAY +
Sbjct: 270 LTVEKKITLERIAHFQMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYRKGE 329
Query: 326 LVEKDPLVVVKEKFGELM 343
LVE + L + + K E++
Sbjct: 330 LVEPNDLYLARRKLAEVV 347
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 179/359 (49%), Gaps = 43/359 (11%)
Query: 13 HPTASPQGQWLRRTFC-LWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEAL 71
H T + LR F ++ +D L+ A+ R + + ++I P +PI ++
Sbjct: 10 HTTPTAHRHHLRTLFSGTFTLVRDRGLDHAVEREKNLKPLLTLLSLINNEPTKSLPI-SI 68
Query: 72 QKKFKTLDLQGKALNWVSKYP----------CCFDVHQRRCRLTKRMMSLVDEE--LSLK 119
K+ ++L+L + + ++ KYP C F+ H +LT + + L +E L
Sbjct: 69 IKQSRSLNLPFRPIEFIRKYPSVFEEFYNNGCTFEPH---VKLTAKAIDLNADEKFLVAS 125
Query: 120 DSLEPVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESG 179
D + R+ KLLM++ ++ + ++ K + G PDDY+ ++P++PD FR+V G
Sbjct: 126 DVFKKDVAVRVLKLLMIAKGNKIPLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVV---G 182
Query: 180 RRSSMEVELLHWDPDFAVSAVEGL--ARKNGDGAEPGFSCLLPLS---------WVKSWE 228
++ +EL+ W +VS +E + G G E GF WVK W
Sbjct: 183 VDNNAVLELVCWSKKHSVSFLEKKYGDKAKGQGKELGFPVQFSTGFEMDKKYEKWVKEWN 242
Query: 229 RFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKC---SIVKLGHFRR 285
+ YVSPY + L S+E +K VG++HE+L+L + KK +++ +G +
Sbjct: 243 ------GLRYVSPYENGVNLSGSSEESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEW-- 294
Query: 286 EFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQ 344
L R ++L+HPGIFYVS+K ++YTV+LR+ Y LVE +P + + ++ LM
Sbjct: 295 -LGLASRFKRVILQHPGIFYVSSKNRMYTVVLRDGYKRGLLVEDNPAMEFRRRYIHLMN 352
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 155/316 (49%), Gaps = 24/316 (7%)
Query: 54 IKNIILRYPNNEIPIEALQKKFKTLDLQGKALNWVSKYPCCFDV--HQR----RC-RLTK 106
+K+ I R + + + K L L L ++ +YP F H R C RLT
Sbjct: 54 LKDAIKRSSTSFLTAKTFSDWQKLLGLTVPVLRFIRRYPTLFHEFPHPRWNSLPCFRLTD 113
Query: 107 RMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVP 166
L +E S+ E V R +K+LMM ++ + + + K + G PD + ++P
Sbjct: 114 TAQLLDSQEQSIYAVHENDIVERFSKVLMMMKSRTVPIQSLYPLKFDLGLPDAFEKTLIP 173
Query: 167 KYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGLARKNGDGAEPGF--------SCL 218
KYPD F+ V S+ + L+ W +FAVSA++ + + A + + +
Sbjct: 174 KYPDKFQFVKAGNGVSA--IRLVDWCDEFAVSALQKSNQCESENASDQYRDFKRGKTALV 231
Query: 219 LPLSWVKSWE-----RF--HKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTL 271
P+ + + + RF +F+ +PY+SPY+D + S MEKR VG++HE LSL L
Sbjct: 232 FPMRFPRGYGGQKKVRFWMDEFQKLPYISPYADSSKIDPKSDLMEKRVVGVLHEFLSLCL 291
Query: 272 WKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVGSQLVEKDP 331
KK L R E LP + + ++PGIFY+S K K TV LRE Y +LV+ P
Sbjct: 292 HKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHP 351
Query: 332 LVVVKEKFGELMQEGL 347
L ++KF +M+ GL
Sbjct: 352 LARHRDKFYHVMRTGL 367
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 156/296 (52%), Gaps = 28/296 (9%)
Query: 33 KKDPDLETALSRNRRWVVNNQIKNIIL---RYPNNEIPIEALQKKFKTLDLQG--KALNW 87
K+ +LE A +W + ++I +I + P IP+ +L K + L + ++
Sbjct: 44 KRVHELEAA---TEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDF 100
Query: 88 VSKYPCCFDVHQRR-----CRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRL 142
+ K P F++++ R C LT++ L++E + + E + +LLMMS +KR+
Sbjct: 101 LRKTPKLFELYKDRNGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRV 160
Query: 143 NVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEG 202
+ KI F+R+FG P D+ V KYP LFR+V S +EL+ W+ ++A++ +E
Sbjct: 161 QLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEF-LELVSWNSEWAITEIEK 219
Query: 203 LARKNGDGAE-----PGFSCL-LPLSWVKSWERFHK--------FESVPYVSPYSDPRGL 248
+ +G PG L PL + +++R H F+ Y+SPY+D +GL
Sbjct: 220 KNKMIMEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKIKMFQERTYLSPYADAKGL 279
Query: 249 VEGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIF 304
GS E +KR V ++HELLS T+ K+ L HFR E ++P +L LLLKH GIF
Sbjct: 280 KPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIF 335
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 150/298 (50%), Gaps = 29/298 (9%)
Query: 64 NEIPIEALQKKFKTLDLQGKALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLE 123
+EI + +++ + ++ +L+ CF + ++ + + ++ E +SLE
Sbjct: 87 DEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIHREEVDILRE-----NSLE 141
Query: 124 PVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSS 183
F RL KLLM++ + L + I++ K + G P DY V +P+ F V R
Sbjct: 142 --FRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVG 199
Query: 184 MEVELLHWDPDFAVSAVEGLAR--------KNGDGAEP-----GFSCLL-PLSWVKSWER 229
++ LL WD AVS +E A KNG A P GF + W++ W++
Sbjct: 200 LK--LLFWDDKLAVSELEKNASLQQQVEDIKNGTLAFPVSFTRGFGMKRKSMEWLREWQK 257
Query: 230 FHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLL 289
+PY SPY+D L + EKR VG+ HELL LTL K+ + + RR L
Sbjct: 258 ------LPYTSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLAL 311
Query: 290 PDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQEGL 347
P + +HPGIFY+S K TV+LREAY G +LV+K PLV ++E+ L+++GL
Sbjct: 312 PQKFTKAFERHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIREELANLLKKGL 369
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 150/298 (50%), Gaps = 29/298 (9%)
Query: 64 NEIPIEALQKKFKTLDLQGKALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLE 123
+EI + +++ + ++ +L+ CF + ++ + + ++ E +SLE
Sbjct: 87 DEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIHREEVDILRE-----NSLE 141
Query: 124 PVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSS 183
F RL KLLM++ + L + I++ K + G P DY V +P+ F V R
Sbjct: 142 --FRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVG 199
Query: 184 MEVELLHWDPDFAVSAVEGLAR--------KNGDGAEP-----GFSCLL-PLSWVKSWER 229
++ LL WD AVS +E A KNG A P GF + W++ W++
Sbjct: 200 LK--LLFWDDKLAVSELEKNASLQQQVEDIKNGTLAFPVSFTRGFGMKRKSMEWLREWQK 257
Query: 230 FHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLL 289
+PY SPY+D L + EKR VG+ HELL LTL K+ + + RR L
Sbjct: 258 ------LPYTSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLAL 311
Query: 290 PDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQEGL 347
P + +HPGIFY+S K TV+LREAY G +LV+K PLV ++E+ L+++GL
Sbjct: 312 PQKFTKAFERHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIREELANLLKKGL 369
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 134/252 (53%), Gaps = 14/252 (5%)
Query: 104 LTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIR 163
T M L+ EE S+ +S+E V ++ KLLMMS R+++ KI+ + FG PDD+ R
Sbjct: 136 FTDLMEELLAEEKSIMESMELDRVEKVRKLLMMSRFHRISLAKIHHVRNLFGIPDDFRDR 195
Query: 164 IVPKYPDLFRIVSESGRRSSMEV---ELLHWDPDFAVSAVEGLARKNGDGAEPGFSCLLP 220
V KYP+ FRIV + + +V EL++WDP AVSA+E N D A+ F+ P
Sbjct: 196 -VEKYPNYFRIVDDKNKDDGKKVRVLELVNWDPLLAVSAIEKEFMVNEDDAKRKFT--FP 252
Query: 221 LSWVKSWE-------RFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWK 273
+ K E + + ++P VSPYSD + E EK VGL+HE LSLTL K
Sbjct: 253 VKHGKDLELGIEDERKMNLLNALPLVSPYSDGAKFDVWTLEAEKYRVGLIHEFLSLTLEK 312
Query: 274 KCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYV-GSQLVEKDPL 332
+ SI L F+ EF L +L+K P FY++ + V L+E Y L+ KDP
Sbjct: 313 RASIHHLVEFKEEFSLTKHTYHMLVKQPRAFYLAGTEMNWVVFLKEGYDRNGVLIHKDPQ 372
Query: 333 VVVKEKFGELMQ 344
VV EK + Q
Sbjct: 373 VVFNEKVYKYAQ 384
>Medtr2g017885.1 | plant organelle RNA recognition domain protein |
HC | chr2:5564628-5564353 | 20130731
Length = 91
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 72/90 (80%)
Query: 109 MSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVPKY 168
M LV EE S KDSLEPVFV+ LAKLLM+S N + +KINE K + GFPDDYLI IV KY
Sbjct: 1 MELVHEEQSFKDSLEPVFVQHLAKLLMLSLNNCFSAIKINEIKNSLGFPDDYLIGIVAKY 60
Query: 169 PDLFRIVSESGRRSSMEVELLHWDPDFAVS 198
PDLFRI +ESGRRSSM VEL+ W+PDFAVS
Sbjct: 61 PDLFRIRNESGRRSSMVVELMKWNPDFAVS 90
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 159/334 (47%), Gaps = 23/334 (6%)
Query: 34 KDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGKALNWVSKYPC 93
+D L+TA+ + + +KN I+ P+ + + +L+L + V KY
Sbjct: 26 RDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNASMLKASLNLPMITIKLVEKYHH 85
Query: 94 CFDVHQR------RCRLTKRMMSLVDEELSLKDSL--EPVFVRRLAKLLMMSFNKRLNVL 145
F Q R +LT + ++L EE+ + +S + +RLA+LLM++ RL +
Sbjct: 86 VFMQFQPSPGLPPRIKLTAQALALHKEEMEVHNSRTNQEDAAQRLARLLMLAGMARLPIY 145
Query: 146 KINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEV---ELLHWDPDFAVSAVEG 202
I + K + G P DY+ ++ YPD F + S EV EL+ W + +VS +E
Sbjct: 146 VIEKLKWDMGLPHDYVTTLLAYYPDYFDVCVVEDPLSGKEVLALELVSWRKELSVSELEK 205
Query: 203 LARKNGDGAEP-----GFSCLLPLSW-----VKSWERFHKFESVPYVSPYSDPRGLVEGS 252
A+ F LP S+ VK+W ++++PY+SPY + L S
Sbjct: 206 RVMGFNYDADKRRHDIQFPMFLPKSFALEKRVKTW--VEGWQTLPYISPYENAFHLDSNS 263
Query: 253 KEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKI 312
+ EK V ++HELLSL + KK L + L R L+ HPGIFY+SNK +
Sbjct: 264 DQAEKWTVAILHELLSLLVSKKTESENLICYGECLGLGSRFKKALVHHPGIFYLSNKIRT 323
Query: 313 YTVLLREAYVGSQLVEKDPLVVVKEKFGELMQEG 346
T +LREAY LV+ P++ + + LM +
Sbjct: 324 QTAVLREAYRNEFLVKNHPVMGTRYWYIHLMTKA 357
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 152/314 (48%), Gaps = 39/314 (12%)
Query: 80 LQGKALNWVSKYPCCFD--VHQRR----CRLTKRMMSLVDEELSLKDSLEPVFVRRLAKL 133
L +++ KYP F VH R CR+TK+M L+ E + E V+R+ KL
Sbjct: 95 LNVTVTSFLQKYPHVFYLFVHPFRRNMCCRMTKKMKELILLEEVVVRQHEVEVVKRVKKL 154
Query: 134 LMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSME-VELLHWD 192
LMMS N L++ + +R G P D+ I+ +Y D FR+V +E V L+ WD
Sbjct: 155 LMMSVNGTLHLHALRLIRRELGLPCDFRESILGRYSDEFRLVD-------LEIVALVGWD 207
Query: 193 PDFAVSAVEGLARKNGDG---AEPGFSCLLPLSWVKSW-------ERFHKFESVPYVSPY 242
+ ++ VE + +E P+++ + E+ ++ + Y PY
Sbjct: 208 DELGMARVEEWREREYREKWLSEFETKFAFPINFPTGFKIERGFREKLKGWQRLSYTKPY 267
Query: 243 SDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPG 302
G + EKR V ++HELLSLT+ K + +L HFRR+F + + LLL+HPG
Sbjct: 268 ERKNVKCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFDIEVNVRELLLRHPG 327
Query: 303 IFYVSNKYKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKR 362
IFY+S K TV LREAY L+E +P+ V+ EL+ G +R
Sbjct: 328 IFYISTKGNAQTVFLREAYEKGGLIEPNPVYEVRRNMLELVLLG--------------RR 373
Query: 363 RTKGVPFARADETK 376
+TK + A DE+K
Sbjct: 374 KTKQL-LASCDESK 386
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 159/331 (48%), Gaps = 63/331 (19%)
Query: 37 DLETALSRNRRWVVNNQIK---NIILRYPNNEIPIEALQKKFKTLDLQG--KALNWVSKY 91
+LE A +W + ++I ++ + P IP+ +L K + L + +++ K
Sbjct: 18 ELEAA---TEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKT 74
Query: 92 PCCFDVHQRR-----CRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLNVLK 146
P F++++ R C LT++ L++E + + E + +LLMMS +KR+ + K
Sbjct: 75 PKLFELYKDRNGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQLDK 134
Query: 147 INEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGLARK 206
I F+R+FG P D+ V KYP LFR+V S +EL+ W+ ++A++ +E +
Sbjct: 135 IAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEF-LELVSWNSEWAITEIEKKNKM 193
Query: 207 NGDGA-----EPGFSCL-LPLSWVKSWERFHK--------FESVPYVSPYSDPRGLVEGS 252
+G PG L PL + +++R H F+ Y+SPY+D +GL GS
Sbjct: 194 IMEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKIKMFQERTYLSPYADAKGLKPGS 253
Query: 253 KEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKI 312
E +KR V ++HELLS T+ K+ K
Sbjct: 254 LEFDKRAVAVMHELLSFTVEKRG-----------------------------------KR 278
Query: 313 YTVLLREAYVGSQLVEKDPLVVVKEKFGELM 343
++V L EAY GS+L+EK PL + +EK L+
Sbjct: 279 FSVFLTEAYEGSELIEKSPLFLWREKLLSLV 309
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 166/329 (50%), Gaps = 38/329 (11%)
Query: 44 RNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQG--KALNWVSKYPCCFDVH--- 98
RNR V ++K ++L P + +PI+ L K L L L+ + +YP F++
Sbjct: 69 RNRIRFVQ-KLKTLLLSKPKHFLPIKILSKCRAYLSLHKPRSLLSMIHRYPSIFELFTIP 127
Query: 99 -------------QRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLNVL 145
Q RLT +L EEL+LK S+ V +L KLLM+S ++RL +
Sbjct: 128 WPPTPLNATKLYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQKLLMLSSHRRLLLA 187
Query: 146 KINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGLAR 205
K+ + G P ++ R+ +PD F+IV S R+ +EL+ WD + A + L
Sbjct: 188 KLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRA---LELVSWDTNLA----KPLPP 240
Query: 206 KNGDGAEPGFSCLLPLSWVK-----SWERFH-----KFESVPYVSPYSDP-RGLVEGSKE 254
+ + L ++ + +R H KFE +P V PY++P + S E
Sbjct: 241 RESHSLDLIVDRPLKFKQLRLRKGLNLKRPHRDYLLKFEEMPEVCPYNNPAESSTKESIE 300
Query: 255 MEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYT 314
EKR ++ E+L +T+ K+ I L HFR+EF LP++L ++++HP +FY S K + +
Sbjct: 301 AEKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPNKLRGMIVRHPELFYTSLKGQRDS 360
Query: 315 VLLREAY-VGSQLVEKDPLVVVKEKFGEL 342
V L E + L+EKD ++ +++K+ +L
Sbjct: 361 VFLVERFDEKGNLLEKDEVLALQDKWMDL 389
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 161/374 (43%), Gaps = 66/374 (17%)
Query: 31 SSKKDPDLETALSRNRRWVVNNQIKNIILRYPNN-EIPIEALQKKFKTLDLQGKALNWVS 89
S +DP E + + + + + ++IL P N + ++ L + L L A ++
Sbjct: 51 SRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAFLR 110
Query: 90 KYPCCFDVH------QRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLN 143
K+P F+++ Q CRLT + + +E ++ P+ V RL ++L MS +K +
Sbjct: 111 KFPHIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVVERLVRILSMSASKTVP 170
Query: 144 VLKINEFKRNFGFPDDYLIRIVPKYPDLFRI----------------VSESGRRSSMEVE 187
+ + + R G PDD+ ++ +F++ V SG R+++E
Sbjct: 171 LRAVFKVWRELGLPDDFEESVIAANSSVFQLCDADEQNTHLLKLVGDVPSSGFRAAVE-- 228
Query: 188 LLHWDPDFAVSAVEGLARKNGDGAEPGFSCLLPLSW---------VKSWERFHKFESVPY 238
W V + + N F P VK W+ S+PY
Sbjct: 229 --DWR---VVECCKDESSVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQ------SLPY 277
Query: 239 VSPYS----DPRGLVEGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLN 294
+ PY + G MEKR V +VHE +SLT+ K + K+ FR+ F + +
Sbjct: 278 MGPYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIR 337
Query: 295 VLLLKHPGIFYVSNKYKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQEGLHEYNQRR 354
L L HPGIFY+S K K +TV LREAY L+ +P+ Y+ RR
Sbjct: 338 DLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIHPNPV-----------------YDARR 380
Query: 355 RIRNLEKRRTKGVP 368
R+ +L +G+P
Sbjct: 381 RLLDLVALERRGLP 394
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 147/310 (47%), Gaps = 23/310 (7%)
Query: 54 IKNIILRYPNNEIPIEALQKKFKTLDLQGKALNWVSKYPCCFD------VHQRRCRLTKR 107
+KN I + PN IPI ++ K+ LD+ K ++ +YP F+ + RLT
Sbjct: 75 LKNCIAQDPNGCIPISSVSKRGLQLDVPMKVARFLRQYPSIFEEFTGPKYNHPWFRLTPE 134
Query: 108 MMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVPK 167
+ +E + + RL K+++M+ L + I + G P D+L
Sbjct: 135 AAEIDRDEKRVYEESREELRSRLKKMILMTKENVLPLKIIQGMQWYLGLPHDFLQHHEQN 194
Query: 168 YPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGLARKNG---DGAE------PGF--S 216
D FR V + +E + S +E A K G DG++ P F
Sbjct: 195 LDDSFRFVEMEDGLKGLAIE----SRERVYSVMEENAMKKGMYYDGSQTEAIEFPFFPSK 250
Query: 217 CLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKCS 276
L + +++W H+F+ +PY+SPY D L S EKR +G++HELLSL +
Sbjct: 251 ALRMKTKIENW--LHEFQKLPYISPYDDFSNLDPNSDIAEKRLIGVLHELLSLFIDHSAE 308
Query: 277 IVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVGSQLVEKDPLVVVK 336
KL ++ F P +++ +HP +FY+S + K TV+L+EAY +E PL+ V+
Sbjct: 309 RRKLLCLKKYFGFPQKVHRAFERHPHMFYMSMRNKTCTVILKEAYCNELAIENHPLLSVR 368
Query: 337 EKFGELMQEG 346
+++ +LM+E
Sbjct: 369 KRYIKLMKES 378
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 157/361 (43%), Gaps = 64/361 (17%)
Query: 31 SSKKDPDLETALSRNRRWVVNNQIKNIILRYPNN-EIPIEALQKKFKTLDLQGKALNWVS 89
S +DP E + + + + + ++IL P N + ++ L + L L A ++
Sbjct: 51 SRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAFLR 110
Query: 90 KYPCCFDVH------QRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRL- 142
K+P F+++ Q CRLT + + +E ++ P+ V RL ++L MS +K +
Sbjct: 111 KFPHIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVVERLVRILSMSASKTVP 170
Query: 143 --NVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAV 200
V K+ + + +L+++V P SG R+++E W V
Sbjct: 171 LRAVFKLCDADEQ----NTHLLKLVGDVPS-------SGFRAAVE----DWR---VVECC 212
Query: 201 EGLARKNGDGAEPGFSCLLPLSW---------VKSWERFHKFESVPYVSPYS----DPRG 247
+ + N F P VK W+ S+PY+ PY +
Sbjct: 213 KDESSVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQ------SLPYMGPYEMVSEKKKT 266
Query: 248 LVEGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVS 307
G MEKR V +VHE +SLT+ K + K+ FR+ F + + L L HPGIFY+S
Sbjct: 267 SKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLS 326
Query: 308 NKYKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGV 367
K K +TV LREAY L+ +P+ Y+ RRR+ +L +G+
Sbjct: 327 TKGKRHTVFLREAYERGCLIHPNPV-----------------YDARRRLLDLVALERRGL 369
Query: 368 P 368
P
Sbjct: 370 P 370
>Medtr8g102038.1 | plant organelle RNA recognition domain protein |
HC | chr8:42900320-42901238 | 20130731
Length = 238
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 101 RCRLTKRMMSLVDEELSLKDSLE--PVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPD 158
R +LT + ++L EE+ + +S +RL++LLM++ R + I + K + G P
Sbjct: 53 RVKLTAQALALHKEEMEVHNSRTNREDAAQRLSRLLMLAGMARFPIYVIEKLKWDMGLPH 112
Query: 159 DYLIRIVPKYPDLFRIVSESGRRSSMEV---ELLHWDPDFAVSAVEGLARKNGDGAEP-- 213
DY+ ++ YPD F + S EV E + W + +VS +E GA+
Sbjct: 113 DYVTTLLAHYPDYFDVCVVEDPLSGKEVLALEFVLWRKELSVSELEKRVMGFNYGADNRR 172
Query: 214 ---GFSCLLPLSW-----VKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHE 265
F LP S+ VK+W ++++PY+SPY + L S + EK +V ++HE
Sbjct: 173 YDIQFPMFLPKSFALEKRVKTW--VEGWQTLPYISPYENAFHLDSNSDQAEKWSVAILHE 230
Query: 266 LLSLTLWK 273
LLSL + K
Sbjct: 231 LLSLLVSK 238