Miyakogusa Predicted Gene

Lj5g3v1950950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1950950.1 Non Characterized Hit- tr|I1LDH0|I1LDH0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.2890
PE=,85.25,0,UIM,Ubiquitin interacting motif; seg,NULL;
Ubiquitin-interacting motif.,Ubiquitin interacting motif;,CUFF.56232.1
         (617 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g098940.1 | ubiquitin interaction motif protein | HC | chr...   927   0.0  

>Medtr1g098940.1 | ubiquitin interaction motif protein | HC |
           chr1:44587004-44594599 | 20130731
          Length = 619

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/624 (76%), Positives = 509/624 (81%), Gaps = 12/624 (1%)

Query: 1   MADRGEEDDLEMAIRMSMQENPTPEPKRSKPRDVVDGVVSGSPEDSPEYKTXXXXXXXXX 60
           MAD+GE++DL+MAIRMSM    TPEPKR+KPRD V GVVSG PEDSPE KT         
Sbjct: 1   MADQGEDEDLQMAIRMSM----TPEPKRNKPRDEVAGVVSGLPEDSPESKTRRRELMAAA 56

Query: 61  XXXXXXXTTSWVSPSPPQ-----SPAGKGVIKGAEAG--KTEQDLRLKGGDLSKVLSVDE 113
                      VSP P +     SPA K   KG E G  K E++L  KG   SK LS +E
Sbjct: 57  AEKRMAAVVR-VSPLPSRLPASPSPAVKEEKKGGEVGIVKREEELVFKGESFSKELSAEE 115

Query: 114 ANQLFVMVFGSEVSKGILAQWSNQGIRFSSDPVTSMGLVQHEGGPCGVLAAIQAFVLKYI 173
           AN+LFVMVFGSEVSKGILAQW NQGIRFSSDP TSMGLVQHEGGPCGVLA IQAFVLKYI
Sbjct: 116 ANKLFVMVFGSEVSKGILAQWCNQGIRFSSDPETSMGLVQHEGGPCGVLATIQAFVLKYI 175

Query: 174 LFFSDELKDVSLMPQNRGLGASFKSQSVPSYNFSSLSEGGKVRALVRSMGEILFSCGNNR 233
           +FFSDELK++S MPQNRGLG S KS   PSYN SSL++G KVRALVRSMGEILFSCGNN+
Sbjct: 176 IFFSDELKELSRMPQNRGLGVSSKSHPAPSYNISSLTDGVKVRALVRSMGEILFSCGNNK 235

Query: 234 RAVIATLSIPENDILRFDGISEHEVMARSLEGLSIESASDLQKVLRVETYTSQTTLLQRL 293
           RAVIATLSIP ND  RF+GISE EV+A SL+ LSI+SA DL KVLRVET+TS+TT LQRL
Sbjct: 236 RAVIATLSIPGNDSQRFEGISEEEVIASSLKALSIDSALDLLKVLRVETHTSETTALQRL 295

Query: 294 EAVIPLFQSRMGALLFLISALLSRGLDLVQSDRDDPSLPLVTAPFGHASQEIVNLLLCGQ 353
           EA IPLFQSRMGALLFLISALLSRGLDLVQSDRDDPSLPLVTAPFGHASQEIVNLLLCGQ
Sbjct: 296 EANIPLFQSRMGALLFLISALLSRGLDLVQSDRDDPSLPLVTAPFGHASQEIVNLLLCGQ 355

Query: 354 AVPNVFDGRMDLGGGMFLKGISQNVEVGFLTLLESLNFCKVGQFLKSPQWPIWVVGSESH 413
           AVPNVFDGRMDLGGGMFLKGIS+ VEVGFLTLLESLNFCKVGQFLK+P+WPIWVVGSESH
Sbjct: 356 AVPNVFDGRMDLGGGMFLKGISRTVEVGFLTLLESLNFCKVGQFLKTPKWPIWVVGSESH 415

Query: 414 YTVLFALDPSVQNENELEGRETEIRRAFDAQDQSGGGGFISVEGFHHVLRETNIKLPSDK 473
           YTVLFALDP+VQNENELEGRET+IR+AFDAQDQSGGGGFISVEGFH V+RETNIKLP+DK
Sbjct: 416 YTVLFALDPTVQNENELEGRETQIRKAFDAQDQSGGGGFISVEGFHQVIRETNIKLPADK 475

Query: 474 LDHLCGAGFIVWSEFWQVIXXXXXXXXXXXXXXXXXXXXVFDLYHFNGIAKSDLNGSQVN 533
           LD+LC AGFIVWSEFWQVI                    VFDL+HFNGIAKSDLNGSQV+
Sbjct: 476 LDNLCSAGFIVWSEFWQVILDLDKSLGGLKDSSGLMGKKVFDLFHFNGIAKSDLNGSQVS 535

Query: 534 AGGETPLQRPRLTKLSVSVPPRWTPEEFMADVNVXXXXXXXXXXXXXXEVSKPEPTQHAP 593
            GGETPLQRPRLTKLSVSVPPRWTPEEFM +V                EVSKPEPTQHAP
Sbjct: 536 FGGETPLQRPRLTKLSVSVPPRWTPEEFMTNVQGPSASGASDSAGKDTEVSKPEPTQHAP 595

Query: 594 LVDCIRTRWPRAVCSWLGDPPSIV 617
           LVDCIRTRW RAVCSW GDPPSIV
Sbjct: 596 LVDCIRTRWARAVCSWSGDPPSIV 619