Miyakogusa Predicted Gene

Lj5g3v1915180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1915180.1 Non Characterized Hit- tr|D3GDL2|D3GDL2_CAMSI
Putative one-helix protein OS=Camellia sinensis PE=2
S,100,0.000000000003, ,CUFF.56174.1
         (35 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g098280.1 | light-harvesting complex I chlorophyll A/B-bin...    70   4e-13

>Medtr1g098280.1 | light-harvesting complex I chlorophyll
           A/B-binding protein | HC | chr1:44235732-44238029 |
           20130731
          Length = 175

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/35 (91%), Positives = 35/35 (100%)

Query: 1   MFGFAVGMLTEYATGSDFVDQVKILLSNFGIVDLE 35
           MFGFAVG+LTE+ATGSDFVDQVKILLSNFGIVDL+
Sbjct: 141 MFGFAVGLLTEFATGSDFVDQVKILLSNFGIVDLD 175