Miyakogusa Predicted Gene

Lj5g3v1903720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1903720.1 Non Characterized Hit- tr|F6HDR8|F6HDR8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,59.74,1e-17,seg,NULL; Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin,Bifunctional inhibit,CUFF.56146.1
         (77 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g071730.1 | Lipid transfer protein | HC | chr1:31857703-31...    67   3e-12
Medtr1g071730.2 | Lipid transfer protein | HC | chr1:31857616-31...    67   3e-12
Medtr5g006950.1 | Lipid transfer protein | HC | chr5:1146399-114...    46   9e-06

>Medtr1g071730.1 | Lipid transfer protein | HC |
          chr1:31857703-31858581 | 20130731
          Length = 145

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 43/77 (55%)

Query: 1  MTYRGFALCLVMVMVATMWTQNAAQSGCTSALTSLSPCLNYITGXXXXXXXXXXXXXXXX 60
          M ++G+ L LVMV+VA M TQN AQSGCTS +TSLSPCLNYI G                
Sbjct: 1  MAFKGYILFLVMVLVANMCTQNEAQSGCTSTITSLSPCLNYIMGSSSNPSSSCCSQLSSV 60

Query: 61 XXXXXXXXXXLLNGGGS 77
                    LLNGGGS
Sbjct: 61 VQSSPQCLCSLLNGGGS 77


>Medtr1g071730.2 | Lipid transfer protein | HC |
          chr1:31857616-31858759 | 20130731
          Length = 112

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 43/77 (55%)

Query: 1  MTYRGFALCLVMVMVATMWTQNAAQSGCTSALTSLSPCLNYITGXXXXXXXXXXXXXXXX 60
          M ++G+ L LVMV+VA M TQN AQSGCTS +TSLSPCLNYI G                
Sbjct: 1  MAFKGYILFLVMVLVANMCTQNEAQSGCTSTITSLSPCLNYIMGSSSNPSSSCCSQLSSV 60

Query: 61 XXXXXXXXXXLLNGGGS 77
                    LLNGGGS
Sbjct: 61 VQSSPQCLCSLLNGGGS 77


>Medtr5g006950.1 | Lipid transfer protein | HC |
          chr5:1146399-1147714 | 20130731
          Length = 168

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 1  MTYRGFALCLVMVMVATMWTQNAAQSGCTSALTSLSPCLNYITG 44
          M +    + LV+V++A M     AQS CT+ L SLSPCLNYITG
Sbjct: 1  MAHSKMNMNLVLVVIAMMCAGATAQSSCTNVLVSLSPCLNYITG 44