Miyakogusa Predicted Gene

Lj5g3v1903700.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1903700.2 CUFF.56144.2
         (310 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g097610.1 | 30S ribosomal protein S1 | HC | chr1:44033341-...   549   e-156
Medtr2g033020.1 | 30S ribosomal protein S1 | HC | chr2:12449707-...   107   1e-23
Medtr3g084860.1 | S1 RNA-binding domain protein | HC | chr3:3833...    67   3e-11

>Medtr1g097610.1 | 30S ribosomal protein S1 | HC |
           chr1:44033341-44028473 | 20130731
          Length = 511

 Score =  549 bits (1414), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/310 (86%), Positives = 287/310 (92%)

Query: 1   MLTKEVLPLYGKEMENLLFDVEKDTENFMAQGKIGIVKNDEALSGVPVPGRPVVETGTIL 60
           MLTKEVLPL GKEM++LL DV KD ENF  QGK+GIVKNDE +SGV VPGRPVVETGTIL
Sbjct: 202 MLTKEVLPLNGKEMDHLLCDVNKDAENFTVQGKMGIVKNDEVMSGVSVPGRPVVETGTIL 261

Query: 61  FAEVLGRTLSGRPLLSTRRFFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTRIEGLRA 120
           FAEVLGRTLSGRPL+STRR FRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLT IEGLRA
Sbjct: 262 FAEVLGRTLSGRPLISTRRLFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTTIEGLRA 321

Query: 121 FLAKAELVKRVNTFTELKENVGRRMYVQITRIDEDKNSLMLSEKKAWEKLFLREGTLLDG 180
           FL KAELV RVN+FTELKENVGRRM+V+ITRIDE KNSL+LSEK AWEK +LREGTLLDG
Sbjct: 322 FLPKAELVTRVNSFTELKENVGRRMFVEITRIDEAKNSLVLSEKGAWEKAYLREGTLLDG 381

Query: 181 TVKKIFPYGAQIKIGVSNRSGLLHISNISRAEITSVSDVLSVDENVKVLVVKSAFPDKIS 240
           TVKKIFPYGAQIKIG +NRSGLLH+SNI+RAE+TSVSDVL VDE VKVLVV+S FPDKIS
Sbjct: 382 TVKKIFPYGAQIKIGKTNRSGLLHVSNITRAEVTSVSDVLFVDEKVKVLVVRSMFPDKIS 441

Query: 241 LSIAALESEPGLFLSNKERVFLEAEMMAKKYKQKLPPAITTKRLDPLPTSALPFENEALY 300
           LSIA LESEPGLFLSNKERVF+EA+MMAKKYKQKLPP I + +L+PLPTSALPFENEALY
Sbjct: 442 LSIADLESEPGLFLSNKERVFMEADMMAKKYKQKLPPHIVSTKLEPLPTSALPFENEALY 501

Query: 301 ANWKWFKFEK 310
           ANWKWFKFEK
Sbjct: 502 ANWKWFKFEK 511


>Medtr2g033020.1 | 30S ribosomal protein S1 | HC |
           chr2:12449707-12453501 | 20130731
          Length = 409

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 11/232 (4%)

Query: 74  LLSTRRFFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTRIEGLRAFLAKAELVKRVNT 133
           +LS R     +AW R RQ+Q  +  ++ +I + N GG++  +EGL+ F+  +++    +T
Sbjct: 158 ILSLRDIQFELAWERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQM----ST 213

Query: 134 FTELKENVGRRMYVQITRIDEDKNSLMLSEKKAWEKL--FLREGTLLDGTVKKIFPYGAQ 191
            +  +E +   + ++   +D+++  L+LS +KA   +   L  G+++ GTV+ + PYGA 
Sbjct: 214 KSPGEEIIEFEVPLKFVEVDQEQARLVLSHRKAVAGIQGQLGIGSVVTGTVQSLKPYGAF 273

Query: 192 IKIGVSNRSGLLHISNISRAEITSVSDVLSVDENVKVLVVKSAFP-DKISLSIAALESEP 250
           I IG    SGLLH+S IS   I+ +  VL   + +KV+++       ++SLS   LE  P
Sbjct: 274 IDIG-GGISGLLHVSQISHDRISDIVTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 332

Query: 251 GLFLSNKERVFLEAEMMAKKYKQKLPPAITTKRLDPL---PTSALPFENEAL 299
           G  + N   VF +AE MA+ ++Q++  A    R D L   P S L   ++ +
Sbjct: 333 GDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGI 384


>Medtr3g084860.1 | S1 RNA-binding domain protein | HC |
           chr3:38332018-38337733 | 20130731
          Length = 399

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 17/165 (10%)

Query: 102 RITEWNTGGLLTRIEGLRAFLAKAELVKRVNTFTE--------LKENVGRRMYVQITRID 153
           R+  +N GGLL R   +  FL   +L   V++  E         +E +G  + V++  +D
Sbjct: 120 RVEGFNAGGLLVRFYSIMGFLPYPQLSP-VHSCQEPDQTIKERARELIGAILSVKVIIVD 178

Query: 154 EDKNSLMLSEKKA-WEKL--FLREGTLLDGTVKKIFPYGAQIKI----GVSNRSGLLHIS 206
           E+K  L+LSEK+A W K    +  G L +G V  +  YGA + +    G+ + +GL+HIS
Sbjct: 179 EEKRKLVLSEKEASWFKHSKHINIGDLFEGRVGSVEDYGAFVHLRFPDGLYHLTGLIHIS 238

Query: 207 NISRAEITSVSDVLSVDENVKVLVVK-SAFPDKISLSIAALESEP 250
            +S   +  V D L   E V+V V+       +++LSI  LE +P
Sbjct: 239 EVSWDLVQDVRDFLREGEEVRVKVISIDTVKMRLTLSIKQLEEDP 283