Miyakogusa Predicted Gene

Lj5g3v1903700.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1903700.1 CUFF.56144.1
         (352 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g097610.1 | 30S ribosomal protein S1 | HC | chr1:44033341-...   374   e-104

>Medtr1g097610.1 | 30S ribosomal protein S1 | HC |
           chr1:44033341-44028473 | 20130731
          Length = 511

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/342 (62%), Positives = 241/342 (70%), Gaps = 38/342 (11%)

Query: 1   MPFIL--HPCKF-LCFQCRMPVKDTSFFSNTFIKKSHTKSPSPAPQKLCSF--AVLFNPH 55
           M FIL  HPC   LCF C          S  F KKS+        +K+CSF   VL  PH
Sbjct: 1   MSFILQLHPCNSSLCFSCN---------SFIFSKKSY--------KKVCSFPNTVLSTPH 43

Query: 56  SS---KKVSILSDTHFTFCSRNGGFDGISSDLSPEANDDGTQELELLNKPYPVRVAEELA 112
            S   KKVSILS+THF FCS+NGGFD +SSDL+ EA DD  Q +ELLNKP PV       
Sbjct: 44  GSIVSKKVSILSNTHFNFCSKNGGFDEVSSDLAGEAIDDEIQ-VELLNKPSPVL------ 96

Query: 113 SEAEMDQEKPSQQEALAPFLKFFKGS-DSMEEVEEDGDVLQVS----EEKXXXXXXXXXX 167
            E E++QE+PS++EALAPF KFFKGS D ++EVEED +VL++     ++           
Sbjct: 97  -EVEIEQERPSEEEALAPFFKFFKGSKDYVKEVEEDNEVLELEVSEEKDGVSDEVEKEDE 155

Query: 168 XXXXXXXXXXXXXXXXPKPGDFVVGVVVSGNEYKLDINVGADLLGTMLTKEVLPLYGKEM 227
                           PKPGDFVVGVVVSGNE KLD+NVGADLLGTMLTKEVLPL GKEM
Sbjct: 156 GKEEGEDKKVNVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLNGKEM 215

Query: 228 ENLLFDVEKDTENFMAQGKIGIVKNDEALSGVPVPGRPVVETGTILFAEVLGRTLSGRPL 287
           ++LL DV KD ENF  QGK+GIVKNDE +SGV VPGRPVVETGTILFAEVLGRTLSGRPL
Sbjct: 216 DHLLCDVNKDAENFTVQGKMGIVKNDEVMSGVSVPGRPVVETGTILFAEVLGRTLSGRPL 275

Query: 288 LSTRRFFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTRIE 329
           +STRR FRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLT IE
Sbjct: 276 ISTRRLFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTTIE 317