Miyakogusa Predicted Gene
- Lj5g3v1889580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1889580.1 Non Characterized Hit- tr|I1NH63|I1NH63_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50116
PE,81.55,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; PABP-1234:
polyadenylate binding protein, human ty,,CUFF.56121.1
(658 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 995 0.0
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 995 0.0
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 737 0.0
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 659 0.0
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 596 e-170
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 578 e-165
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 550 e-156
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 387 e-107
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 358 7e-99
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 124 4e-28
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 121 2e-27
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 120 3e-27
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 107 3e-23
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 107 3e-23
Medtr1723s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protei... 106 7e-23
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 99 1e-20
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 98 3e-20
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 96 8e-20
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 96 8e-20
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 95 2e-19
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 95 3e-19
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 95 3e-19
Medtr0989s0020.1 | polyadenylate-binding-like protein | LC | sca... 94 4e-19
Medtr0913s0010.1 | polyadenylate-binding-like protein | LC | sca... 93 9e-19
Medtr1889s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protei... 87 5e-17
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 86 9e-17
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 84 4e-16
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 3e-15
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 3e-15
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 3e-15
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 3e-15
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 3e-15
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 80 9e-15
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 80 9e-15
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 1e-14
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 2e-14
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 2e-14
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 2e-14
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 2e-14
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 77 5e-14
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 76 1e-13
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 75 2e-13
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 2e-13
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 2e-13
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 2e-13
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 2e-13
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 2e-13
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 3e-12
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 4e-12
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 70 8e-12
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 1e-11
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 2e-11
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 2e-11
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 67 4e-11
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 5e-11
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 9e-11
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 1e-10
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 1e-10
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 1e-10
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 65 2e-10
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 65 2e-10
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 65 2e-10
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 65 2e-10
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 65 3e-10
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 64 3e-10
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 64 7e-10
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 7e-10
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 8e-10
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 63 8e-10
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 1e-09
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 63 1e-09
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 63 1e-09
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 63 1e-09
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 62 1e-09
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 62 1e-09
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 62 1e-09
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 3e-09
Medtr2g070540.1 | CTC-interacting domain protein | HC | chr2:297... 61 4e-09
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 2e-08
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 59 2e-08
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 59 2e-08
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 59 2e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 4e-08
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 57 4e-08
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 5e-08
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 5e-08
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 5e-08
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 57 5e-08
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 6e-08
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 7e-08
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 8e-08
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 9e-08
Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like pro... 56 1e-07
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 1e-07
Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like pro... 56 1e-07
Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like pro... 56 1e-07
Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like pro... 56 1e-07
Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like pro... 56 1e-07
Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like pro... 56 1e-07
Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like pro... 56 1e-07
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-07
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-07
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC... 55 2e-07
Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC... 55 3e-07
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 54 4e-07
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 6e-07
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 7e-07
Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 7e-07
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 8e-07
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 8e-07
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 8e-07
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 9e-07
Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 9e-07
Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr7g024090.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr4g063557.3 | RNA and export factor-binding protein | HC | c... 52 2e-06
Medtr4g063557.2 | RNA and export factor-binding protein | HC | c... 52 2e-06
Medtr4g063557.1 | RNA and export factor-binding protein | HC | c... 52 2e-06
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr3g092510.1 | CTC-interacting domain protein | HC | chr3:422... 52 2e-06
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 3e-06
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-06
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 4e-06
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 6e-06
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 6e-06
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 7e-06
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 7e-06
Medtr3g065490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 8e-06
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 9e-06
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 9e-06
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 9e-06
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 1e-05
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 1e-05
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/626 (76%), Positives = 537/626 (85%), Gaps = 3/626 (0%)
Query: 33 GGPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQD 92
GGPFANASLYVGDLEG+VNE QL+DLFSQ+AQ+VSIRVCRDQT+RSSLGYAYVNF NAQD
Sbjct: 24 GGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQD 83
Query: 93 AANALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP 152
AANA ELLNFTP+N KPIRIMFSQRDPS+RKSG NVFIKNLDTSID+KALHDTFAAFGP
Sbjct: 84 AANAKELLNFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGP 143
Query: 153 VLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRAN 212
VLSCKVA+D +GQSKGYGFVQFDN+EAA++AI +L+GMLINDK+VYVG FVRHQER R N
Sbjct: 144 VLSCKVALDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTN 203
Query: 213 GSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAA 272
GSPKFTNVYVKN+SE+ TDEDLKQLF PFG+ITSATVMKD NG S+CFGFVNF+SPDSAA
Sbjct: 204 GSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAA 263
Query: 273 AAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDN 332
AAVEKLNGT INDDKVL+ GRAQRKAERE EL+AKFEQERISRYEKLQGANLY+KNLDD+
Sbjct: 264 AAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDD 323
Query: 333 INDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPL 392
N+EKLKDLFSEFGT+TS +VMLDS+G+SKGSGFVAFSTPEEAN+A+ EMNGKLVGRKPL
Sbjct: 324 FNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPL 383
Query: 393 YVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFM 452
+VAVAQRKE+RKA+LQAHFAQI+ PGGMAPL A + GYH G PRLAPQQLYYGQG+PGF+
Sbjct: 384 FVAVAQRKEERKAQLQAHFAQIRAPGGMAPLAAELTGYHPGAPRLAPQQLYYGQGTPGFI 443
Query: 453 PPQPAGYGFQQQMLPGMRPGVAPNFIMPYXXXXXXXXXXXXXXXXXXNLQSGQPNQVPHR 512
PPQPAG+GFQQQ+LPGMRPGVAPNF+MPY NLQ Q NQ+ HR
Sbjct: 444 PPQPAGFGFQQQILPGMRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVQQNQMLHR 503
Query: 513 NSNQGFRYMATNRNGMDXXXXXXXXXXXXXXXXFDGYGVTAAPAENQRPAVXXXXXXXXX 572
NSNQG+RYMA NRNGMD FDG GV+AAP +NQRP
Sbjct: 504 NSNQGYRYMANNRNGMDPSGVHQGLAGPMLPMTFDGSGVSAAPIDNQRPG--STSLASAL 561
Query: 573 XXXXPENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSE 632
P+NQR+MLGEHLYPLV+ LTPNQHTAKVTGMLLEMDQSEVIHLIESP+ LK+KVSE
Sbjct: 562 ASATPDNQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPDALKIKVSE 621
Query: 633 ALRVLRDAAAPGSEVSDQLGSFSLNE 658
AL+VL +AA+ GSEV DQLGS SLN+
Sbjct: 622 ALQVLHEAAS-GSEVGDQLGSLSLNK 646
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/626 (76%), Positives = 537/626 (85%), Gaps = 3/626 (0%)
Query: 33 GGPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQD 92
GGPFANASLYVGDLEG+VNE QL+DLFSQ+AQ+VSIRVCRDQT+RSSLGYAYVNF NAQD
Sbjct: 24 GGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQD 83
Query: 93 AANALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP 152
AANA ELLNFTP+N KPIRIMFSQRDPS+RKSG NVFIKNLDTSID+KALHDTFAAFGP
Sbjct: 84 AANAKELLNFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGP 143
Query: 153 VLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRAN 212
VLSCKVA+D +GQSKGYGFVQFDN+EAA++AI +L+GMLINDK+VYVG FVRHQER R N
Sbjct: 144 VLSCKVALDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTN 203
Query: 213 GSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAA 272
GSPKFTNVYVKN+SE+ TDEDLKQLF PFG+ITSATVMKD NG S+CFGFVNF+SPDSAA
Sbjct: 204 GSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAA 263
Query: 273 AAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDN 332
AAVEKLNGT INDDKVL+ GRAQRKAERE EL+AKFEQERISRYEKLQGANLY+KNLDD+
Sbjct: 264 AAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDD 323
Query: 333 INDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPL 392
N+EKLKDLFSEFGT+TS +VMLDS+G+SKGSGFVAFSTPEEAN+A+ EMNGKLVGRKPL
Sbjct: 324 FNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPL 383
Query: 393 YVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFM 452
+VAVAQRKE+RKA+LQAHFAQI+ PGGMAPL A + GYH G PRLAPQQLYYGQG+PGF+
Sbjct: 384 FVAVAQRKEERKAQLQAHFAQIRAPGGMAPLAAELTGYHPGAPRLAPQQLYYGQGTPGFI 443
Query: 453 PPQPAGYGFQQQMLPGMRPGVAPNFIMPYXXXXXXXXXXXXXXXXXXNLQSGQPNQVPHR 512
PPQPAG+GFQQQ+LPGMRPGVAPNF+MPY NLQ Q NQ+ HR
Sbjct: 444 PPQPAGFGFQQQILPGMRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVQQNQMLHR 503
Query: 513 NSNQGFRYMATNRNGMDXXXXXXXXXXXXXXXXFDGYGVTAAPAENQRPAVXXXXXXXXX 572
NSNQG+RYMA NRNGMD FDG GV+AAP +NQRP
Sbjct: 504 NSNQGYRYMANNRNGMDPSGVHQGLAGPMLPMTFDGSGVSAAPIDNQRPG--STSLASAL 561
Query: 573 XXXXPENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSE 632
P+NQR+MLGEHLYPLV+ LTPNQHTAKVTGMLLEMDQSEVIHLIESP+ LK+KVSE
Sbjct: 562 ASATPDNQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPDALKIKVSE 621
Query: 633 ALRVLRDAAAPGSEVSDQLGSFSLNE 658
AL+VL +AA+ GSEV DQLGS SLN+
Sbjct: 622 ALQVLHEAAS-GSEVGDQLGSLSLNK 646
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/621 (61%), Positives = 456/621 (73%), Gaps = 23/621 (3%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDA 93
G F N+SLYVGDL+GNVN+AQLYDLFSQ+A ++S+RVCRDQ +SSLGY YVN++NA+DA
Sbjct: 20 GRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDA 79
Query: 94 ANALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPV 153
ANA+E LN+ P+NGKPIRIMFS RDP IRK+G+AN+FIKNL+TSIDNKALH+TF+ FG V
Sbjct: 80 ANAMENLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNV 139
Query: 154 LSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANG 213
LSCKVA+D++G SKG+GFVQFDND++A+NAI KL+GML+NDKKVYVG FVR QER
Sbjct: 140 LSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFVRCQERS---- 195
Query: 214 SPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAA 273
SPKFTNVYVKNLSES T EDLKQLF FGVITS +MK NGNSKCFGFVNF+S DSAA
Sbjct: 196 SPKFTNVYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGNSKCFGFVNFQSSDSAAT 255
Query: 274 AVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNI 333
AVEKLNG+T ND KVL+ GRAQ+K+EREAEL+A FEQE++ RYEK QGANLY+KN+D ++
Sbjct: 256 AVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSL 315
Query: 334 NDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLY 393
N+EKLK+LFSEFGTITS KVM D+ G SKG GFVAF+TPEEA++A+ EMNGK++G+KP+Y
Sbjct: 316 NEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVY 375
Query: 394 VAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFMP 453
V+VAQRKE+RKA+LQAHF+ IQV GG A GYH+ RLAPQQ YY QG+ M
Sbjct: 376 VSVAQRKEERKAQLQAHFSAIQVSGGNA-------GYHSSVQRLAPQQFYYEQGTFDLMA 428
Query: 454 PQPAGYGFQQQMLPGMRPG-VAPNFIMPYXXXXXXXXXXXXXXXXXXNLQS--GQPNQVP 510
PQP GYGFQ Q + G+ G V PN+++PY N Q + NQ+
Sbjct: 429 PQPNGYGFQPQFMSGVGTGFVTPNYLLPYHLQRQGHPGNRMGGRAAGNFQQVRQKKNQML 488
Query: 511 HRNSNQGFRYMATNRNGMDXXXXXXXXXXXXXXXXFDGYGVTAAPAENQRPAVXXXXXXX 570
RN NQG +Y N GM T+ + P
Sbjct: 489 PRNPNQGLKYNGQNGVGMSLDPGSQMMDPSAS-------AATSTGNHHHGPLSNNSLASA 541
Query: 571 XXXXXXPENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKV 630
ENQ ML EHL+PLV L P TAKVT MLLEMDQSEVIHLIESPE+LKMKV
Sbjct: 542 LASASQ-ENQHRMLEEHLHPLVGRLAPTIQTAKVTRMLLEMDQSEVIHLIESPEELKMKV 600
Query: 631 SEALRVLRDAAAPGSEVSDQL 651
+EA+R LRDA+ G V D+L
Sbjct: 601 AEAMRFLRDASQ-GPAVGDKL 620
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/612 (57%), Positives = 422/612 (68%), Gaps = 16/612 (2%)
Query: 36 FANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAAN 95
F SLYVGDL+ NV ++QLYDLF+QL Q+VS+RVCRD T R SLGY YVN++N QDAA
Sbjct: 31 FVTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAAR 90
Query: 96 ALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLS 155
AL++LNFTP+N +PIRIM+S RDPSIRKSG N+FIKNLD +ID+KALHDTF++FG +LS
Sbjct: 91 ALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILS 150
Query: 156 CKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSP 215
CKVAVD SGQSKGYGFVQFD +EAAQ AI KLNGML+NDK+VYVG F+R QER
Sbjct: 151 CKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRA 210
Query: 216 KFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAV 275
KF NV+VKNLSES TD++LK+ F FG ITSA VM+D +G SKCFGFVNFES D AA AV
Sbjct: 211 KFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAV 270
Query: 276 EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
E LNG I DDK Y G+AQ+K+ERE EL+ KFEQ +K QGANLYVKNLDD+I D
Sbjct: 271 EALNGKKI-DDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIAD 329
Query: 336 EKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
EKLK+LFS +GTITS KVM D G S+GSGFVAFSTPEEA++A+ EMNGK+V KPLYV
Sbjct: 330 EKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVT 389
Query: 396 VAQRKEDRKARLQAHFAQ---IQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFM 452
+AQRKEDR+ARLQA FAQ + +P +AP +P Y G P + QQ++YGQG P +
Sbjct: 390 LAQRKEDRRARLQAQFAQMRPVSMPPSVAPR---MPMYPPGGPGMG-QQIFYGQGPPAII 445
Query: 453 PPQPAGYGFQQQMLPGMRPGVA--PNFIMPYXXXXXXXXXXXXXXXXXXNLQSGQPNQVP 510
P QP G+G+QQQ++PGMRPG A PNF +P +P
Sbjct: 446 PSQP-GFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRGGGVQQSQQPVPLMP 504
Query: 511 HRNSNQGFRYMATNRNGM-DXXXXXXXXXXXXXXXXFDGYGVTAAPAENQRPAVXXXXXX 569
+ +G Y GM D G + A Q P
Sbjct: 505 QQMLPRGRVYRYPPGRGMPDGPMPGVAGGMYSVPYDVGGMPIRDASLSQQIPI---GALA 561
Query: 570 XXXXXXXPENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMK 629
PE QR MLGE+LYPLVE L P+ + AKVTGMLLEMDQ+EV+HL+ESPE LK K
Sbjct: 562 SHLANASPEQQRTMLGENLYPLVEQLEPD-NAAKVTGMLLEMDQTEVLHLLESPEALKAK 620
Query: 630 VSEALRVLRDAA 641
V+EA+ VLR+ A
Sbjct: 621 VAEAMDVLRNVA 632
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 596 bits (1536), Expect = e-170, Method: Compositional matrix adjust.
Identities = 291/417 (69%), Positives = 336/417 (80%), Gaps = 5/417 (1%)
Query: 113 MFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFV 172
MFS RDPSIRK+G+ANVF+KNLDTSIDNK LHDTFA FG VLSCKVA+D++G+S GYGFV
Sbjct: 1 MFSHRDPSIRKTGFANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSNGKSLGYGFV 60
Query: 173 QFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDE 232
Q+DN E+A+ AI KL+GMLI DKK +VG F+R QER NGSPKFTNVYVKNL E+ TDE
Sbjct: 61 QYDNHESAKCAIEKLDGMLIKDKKAFVGYFIRRQERSE-NGSPKFTNVYVKNLLETDTDE 119
Query: 233 DLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAG 292
DLK+LF+ +GVITSA +MKD NGNSKCFGFVNF+SPDSAAAAVEKLNGTT ND KVLY G
Sbjct: 120 DLKKLFSTYGVITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVG 179
Query: 293 RAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFK 352
RAQRK EREAELRAKFEQE+I RYEKLQGANLY+KNLD++INDEKLK++FSEFGTITS K
Sbjct: 180 RAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCK 239
Query: 353 VMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHFA 412
VM D++G+SKG GFVAFST EEA++A+ M+GK++G+KPLYV VAQRKEDRK RLQA F+
Sbjct: 240 VMFDAHGHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVAQRKEDRKTRLQAQFS 299
Query: 413 QIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFMPPQPAGYGFQQQMLPGMRPG 472
QI V GG+ PA I GYH TPRLAPQQLYYGQG+P M PQPAGYG+QQQ +PGM+ G
Sbjct: 300 QINVSGGITSFPARIAGYHQSTPRLAPQQLYYGQGTPRLMLPQPAGYGYQQQFIPGMQSG 359
Query: 473 VAPNFIMPYXXXXXXXXXXXXXXXXXXNLQSGQPNQVPHRNSNQGFRYMATNRNGMD 529
VAPN+IMPY +P RNS+QGFRY RN +D
Sbjct: 360 VAPNYIMPYHPQRHGHTGHRMPPVGNFQQVQQN-QVLP-RNSDQGFRY--NGRNSVD 412
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 161/293 (54%), Gaps = 20/293 (6%)
Query: 39 ASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALE 98
A+++V +L+ +++ L+D F+ ++S +V D +S LGY +V + N + A A+E
Sbjct: 15 ANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSNGKS-LGYGFVQYDNHESAKCAIE 73
Query: 99 LLNFTPVNGKPIRIMFSQRDPSIRKSG---YANVFIKNLDTSIDNKALHDTFAAFGPVLS 155
L+ + K + + R ++G + NV++KNL + ++ L F+ +G + S
Sbjct: 74 KLDGMLIKDKKAFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLFSTYGVITS 133
Query: 156 CKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKV-YVGLFVRHQERGRANGS 214
+ D +G SK +GFV F + ++A A+ KLNG ND KV YVG R ER A
Sbjct: 134 AVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCER-EAELR 192
Query: 215 PKF-------------TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFG 261
KF N+Y+KNL ES DE LK++F+ FG ITS VM D +G+SK FG
Sbjct: 193 AKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAHGHSKGFG 252
Query: 262 FVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERIS 314
FV F + + A+ A+ ++G I K LY AQRK +R+ L+A+F Q +S
Sbjct: 253 FVAFSTSEEASKAINGMSGKIIG-QKPLYVVVAQRKEDRKTRLQAQFSQINVS 304
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 578 bits (1489), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/442 (64%), Positives = 350/442 (79%), Gaps = 6/442 (1%)
Query: 36 FANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAAN 95
F SLYVGDLE NVN++QLYDLF+Q+ Q+VS+RVCRD R SLGY YVNF N QDAA
Sbjct: 29 FVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAAR 88
Query: 96 ALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLS 155
AL++LNFTP+N K IR+M+S RDPS RKSG AN+FIKNLD +ID+KALHDTF++FG ++S
Sbjct: 89 ALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMS 148
Query: 156 CKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSP 215
CK+A D SGQSKGYGFVQF+ +++AQNAI+KLNGMLINDK+V+VG F+R Q+R
Sbjct: 149 CKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKT 208
Query: 216 KFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAV 275
KF NVYVKNLSES T++DLK F +G ITSA +M+D +G SKCFGFVNFE+ + AA AV
Sbjct: 209 KFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAV 268
Query: 276 EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQE-RISRYEKLQGANLYVKNLDDNIN 334
E LNG + DDK Y G+AQ+K+ERE EL+ +FEQ + S +K QG NLY+KNLDD+I
Sbjct: 269 EALNGKKV-DDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSIT 327
Query: 335 DEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYV 394
DEKLK++FSEFGTITS+K+M D G S+GSGFVAFSTPEEA++A+ EMNGK++ KPLYV
Sbjct: 328 DEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYV 387
Query: 395 AVAQRKEDRKARLQAHFAQIQVPGGMAPLPA-GIPGYHAGTPRLAPQQLYYGQGSPGFMP 453
AVAQRKEDR+ARLQA F+Q++ P + P A +P Y GTP L QQ YGQG P MP
Sbjct: 388 AVAQRKEDRRARLQAQFSQMR-PVAITPSVAPRMPLYPPGTPGLG-QQFMYGQGPPAMMP 445
Query: 454 PQPAGYGFQQQMLPGMRPGVAP 475
PQ AG+G+QQQ++PGMRPG P
Sbjct: 446 PQ-AGFGYQQQLVPGMRPGGGP 466
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 62/83 (74%), Gaps = 2/83 (2%)
Query: 577 PENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRV 636
PE QR MLGE LYPLV+ L + AKVTGMLLEMDQ EV+HLIESP+ LK KV+EA+ V
Sbjct: 565 PEQQRTMLGEALYPLVDQLE-HDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEV 623
Query: 637 LRDAA-APGSEVSDQLGSFSLNE 658
LR+ + G+ +DQL S SLN+
Sbjct: 624 LRNVSQQQGNSPADQLASLSLND 646
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 550 bits (1417), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/447 (61%), Positives = 346/447 (77%), Gaps = 7/447 (1%)
Query: 36 FANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAAN 95
SLYVGDL+ +V ++QLYDLF+Q+ Q+VS+R+CRD + SLGY YVNF+N DAA
Sbjct: 21 LTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAK 80
Query: 96 ALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLS 155
A+++LNFTP+N KPIRIM+S RDPS+RKSG AN+FIKNLD +ID+KAL+DTF+ FG +LS
Sbjct: 81 AMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILS 140
Query: 156 CKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSP 215
CK+A+DASG SKGYGFVQF+N+E+AQ+AI+KLNGML+NDK VYVG F R Q+R A +
Sbjct: 141 CKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNA 200
Query: 216 KFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAV 275
KF NVYVKNLSES TD+DLK F +G ITSA VM+DV+G SKCFGFVNFE+ D+AA AV
Sbjct: 201 KFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAV 260
Query: 276 EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
E LNG DDK Y G+A +K ERE EL+ + EQ +K GANLY+KNLDD++ D
Sbjct: 261 EALNGKKF-DDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTD 319
Query: 336 EKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
EKL +LFSEFGT+TS K++ D G S+GSGFVAFSTPEEA +A+ EMNGK+V KPLYVA
Sbjct: 320 EKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Query: 396 VAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFMPPQ 455
AQ+KE+RKARLQA F+Q++ P MAP+ +P Y AG P + QQ+ YGQ P F+
Sbjct: 380 PAQKKEERKARLQAQFSQVR-PVTMAPIAPRLPFYPAGVPGMG-QQIMYGQAPPAFI--S 435
Query: 456 PAGYGFQQQMLPGMRPGVA--PNFIMP 480
AG+G+ QQ++PGMRPG A PNF MP
Sbjct: 436 QAGFGYPQQLVPGMRPGGAPMPNFFMP 462
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Query: 577 PENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRV 636
PE QR MLGE LYPLVE + + AKVTGMLLEMDQ EV+HLIESPE LK KV+EA+ V
Sbjct: 537 PEQQRTMLGEVLYPLVEKIE-HAGAAKVTGMLLEMDQPEVLHLIESPEALKTKVAEAVDV 595
Query: 637 LRDAAAPGSEV-SDQLGSFSLNE 658
LR+ A S +DQL S SLN+
Sbjct: 596 LRNVAQQQSNSPTDQLASLSLND 618
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 318 KLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEAN 376
+L +LYV +LD ++ D +L DLF++ G + S ++ D + S G G+V FS P +A
Sbjct: 20 QLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAA 79
Query: 377 QAMTEMNGKLVGRKPLYVAVAQR 399
+AM +N + KP+ + + R
Sbjct: 80 KAMDVLNFTPLNNKPIRIMYSHR 102
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/439 (48%), Positives = 285/439 (64%), Gaps = 12/439 (2%)
Query: 39 ASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALE 98
ASLYVGDL +++++QL+D FS + S+R+CRD + SL Y YVNF + DA A+E
Sbjct: 10 ASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIE 69
Query: 99 LLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV 158
+ N + +NGK IR+M+S+RDP RKS NVF+KNL SIDN L D F FG +LS KV
Sbjct: 70 VKNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKV 129
Query: 159 AVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFT 218
+ G+SKGYGFVQF+ +E+A AI +LNG L+ DK++YVG FV+ +R + ++T
Sbjct: 130 VMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYT 189
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
N+Y+KNL ++ L++ F+ FG I S V KD NG SK FGFVNF++P+ A A+E +
Sbjct: 190 NLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
NG + K+LY RAQ+KAERE L +FE++R + K +G+N+YVKN+DDN++DE L
Sbjct: 250 NGLQLG-SKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGL 308
Query: 339 KDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQ 398
+D FS GTITS K+M D G SKG GFV FSTPEEAN+A+ +G + KPLYV++AQ
Sbjct: 309 RDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQ 368
Query: 399 RKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFMPPQPAG 458
RKEDR+A+LQ Q+ G P A +PG + P Y G PP+ AG
Sbjct: 369 RKEDRQAQLQLQ-YAQQIAGLAGPSTAIVPGGY-------PPFYYTATGVVSHAPPR-AG 419
Query: 459 YGFQQQML-PGMRP-GVAP 475
+Q L PG R G AP
Sbjct: 420 LVYQPMALRPGWRANGSAP 438
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 577 PENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRV 636
PE Q+ +LGEHLY LV+ + PN AK+TGMLLEMD +E++ LIESPE L KV EA +V
Sbjct: 545 PEQQKEILGEHLYMLVQKIKPNL-AAKITGMLLEMDNAELLVLIESPESLSAKVEEAFQV 603
Query: 637 LRDAAA 642
L+++ A
Sbjct: 604 LKNSKA 609
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 358 bits (920), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 197/450 (43%), Positives = 268/450 (59%), Gaps = 21/450 (4%)
Query: 39 ASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALE 98
A+LYVGDL +V +AQLY FS+ ++S RVC+D SL Y YVN ++ Q+A A+E
Sbjct: 15 ATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIE 74
Query: 99 LLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV 158
L N + +NGK IR+M+ RD RKSG NVF+KNL SIDN LHD F +G +LS K+
Sbjct: 75 LKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKI 134
Query: 159 AVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFT 218
A G+SKG+G++QFD++E+A AI K+NG + DK++YVG F+R ER + KFT
Sbjct: 135 ARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFT 194
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
N+YVKNL T++ L + F+ FG I S + KD NG SK FGFVN++SPD A A+E +
Sbjct: 195 NLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAM 254
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+G+ K+LY RAQ+K ERE L F ++ + K G+N+YVKN+D ++ DE+L
Sbjct: 255 DGSQFG-SKILYVARAQKKVEREQILHHLFVEKGL----KHMGSNIYVKNIDTSVGDEEL 309
Query: 339 KDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQ 398
+D FS G + S KVM D G SKG GFV FST EA ++M+ NG + KPLYV AQ
Sbjct: 310 RDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQ 369
Query: 399 RKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYH--AGTPRLAPQQLYYGQGSPGFMPPQP 456
+KEDRK RL H AP G+ G+ A P P Y + PP
Sbjct: 370 KKEDRK-RLLQHM--------HAPKLEGLAGHSSTAVIPGARPPPFIYRTSGVVYHPPLG 420
Query: 457 AGYGFQQQMLPGM-----RPGVAPNFIMPY 481
+G+ P + + + NF P+
Sbjct: 421 SGWSANGFASPSIGLQQSKASIISNFGKPH 450
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 112/180 (62%), Gaps = 3/180 (1%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
+A+ YVG+L+ ++E L++LF Q +V++ V +D+ GY +V F + +DA A+
Sbjct: 24 DATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAI 83
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLS-C 156
++LN + GKPIR+ + +D G AN+FI NLD +D K L+DTF+AFG +++
Sbjct: 84 KVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
Query: 157 KVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSP 215
K+ D +G S+G+GF+ +D+ EA+ +AI +NG + ++++ V + +G +G+P
Sbjct: 143 KIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTP 202
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
A ++ NLD I + L + F GPV++ V D + Q +GYGFV+F ++E A AI
Sbjct: 25 ATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIK 84
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVI- 244
LN + + K + V + ++ N+++ NL ++ L F+ FGVI
Sbjct: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-----ANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
Query: 245 TSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVL--YAGRAQRKAERE 301
T+ +M+D + GNS+ FGF++++S +++ +A+E +NG + + ++ YA + K ER
Sbjct: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 21/189 (11%)
Query: 221 YVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLN 279
YV NL ++E L +LF G + + V KD V + +GFV F S + A A++ LN
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 280 GTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLK 339
+ + R + ++ + L GANL++ NLD +++++ L
Sbjct: 88 MIKLYGKPI----RVNKASQDKKSLDV--------------GANLFIGNLDPDVDEKLLY 129
Query: 340 DLFSEFGTI-TSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVA 397
D FS FG I T+ K+M D GNS+G GF+++ + E ++ A+ MNG+ + + + V+ A
Sbjct: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 189
Query: 398 QRKEDRKAR 406
+K+ + R
Sbjct: 190 YKKDTKGER 198
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 146/292 (50%), Gaps = 26/292 (8%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
N +L+VGDL ++E L+ F+ +I SI+V R++ + GY +V F + A L
Sbjct: 92 NKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVL 151
Query: 98 ELLN--FTPVNGKPIRIMFSQRDPSIRKSGY----ANVFIKNLDTSIDNKALHDTFAAFG 151
+ P +P R+ ++ K ++F+ +L + + L +TF+
Sbjct: 152 QTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKY 211
Query: 152 P-VLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVR----- 204
P V + KV DA +G+SKGYGFV+F +D A+N++NG+ + + + +G
Sbjct: 212 PSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSG 271
Query: 205 HQERGRANGSPK-------FTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNS 257
+Q+ G++NG+P T ++V L S T EDL+Q F+ +G I S +
Sbjct: 272 YQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPV-----G 326
Query: 258 KCFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGRAQRKAEREAELRAKF 308
K GFV F + ++A A++KLNGTT+ V L GR + +E + +
Sbjct: 327 KGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQFRSEFGSPW 378
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 139/291 (47%), Gaps = 27/291 (9%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+++ +L +D LH FA+ G + S KV + + Q++GYGFV+F + A+ +
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 188 NGMLINDK----KVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFA-PFG 242
GML+ + ++ F + R++ P + ++V +L+ TD L + F+ +
Sbjct: 155 AGMLMPNTEQPFRLNWATFSTGDHK-RSDNVPDLS-IFVGDLAADVTDTMLLETFSDKYP 212
Query: 243 VITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAERE 301
+ +A V+ D N G SK +GFV F + A+ ++NG V + RA R
Sbjct: 213 SVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNG-------VFCSSRAMRIGAAT 265
Query: 302 AELRAKFEQERISRYEKLQG------ANLYVKNLDDNINDEKLKDLFSEFGTITSFKVML 355
+ ++Q S Q ++V LD + E L+ FS++G I S K+ +
Sbjct: 266 PRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPV 325
Query: 356 DSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKAR 406
KG GFV F+ A +A+ ++NG VG++ + ++ + +++ R
Sbjct: 326 -----GKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQFR 371
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 139/276 (50%), Gaps = 25/276 (9%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
N +L++GDL ++E+ L+ F+ +I S++V R++ S GY + F + A L
Sbjct: 96 NKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVL 155
Query: 98 ELLN--FTPVNGKPIRI---MFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP 152
+ P + R+ FS D ++F+ +L + + LH+TF++ P
Sbjct: 156 QNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYP 215
Query: 153 -VLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVR-----H 205
V + KV DA +G+SKGYGFV+F ++ A+ ++NG+ + + + +G H
Sbjct: 216 SVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGH 275
Query: 206 QERGRANGSPK-------FTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSK 258
Q G++NG+ T ++V L + TDEDLKQ F+ +G I S + K
Sbjct: 276 QPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPV-----GK 330
Query: 259 CFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGR 293
GFV F + ++A A++KLNGT I V L GR
Sbjct: 331 GCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGR 366
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 139/286 (48%), Gaps = 14/286 (4%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINK 186
++I +L + +D LH FA+ G + S KV + SG S+GYGF +F + A+ +
Sbjct: 98 TLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQN 157
Query: 187 LNGMLI-NDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAP-FGVI 244
G+L+ N + + + + + + +++V +L+ TD L + F+ + +
Sbjct: 158 YAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSV 217
Query: 245 TSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAE 303
+A V+ D N G SK +GFV F + A+ ++NG + + RK+
Sbjct: 218 KAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGH-- 275
Query: 304 LRAKFEQERISRYEKLQGAN--LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNS 361
+ + S + N ++V LD N+ DE LK FS++G I S K+ +
Sbjct: 276 -QPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPV-----G 329
Query: 362 KGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARL 407
KG GFV F+ A +A+ ++NG ++G++ + ++ + ++ RL
Sbjct: 330 KGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRL 375
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 132/277 (47%), Gaps = 27/277 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L++GDL+ ++E LY+ FS ++ S++V R++ S GY ++ F + A L+
Sbjct: 75 TLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQT 134
Query: 100 LNFT--PVNGKPIRI---MFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTF-AAFGPV 153
N T P G+ R+ FS + S +F+ +L + + L + F + V
Sbjct: 135 FNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSV 194
Query: 154 LSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG------------ 200
KV +D +G++KGYGFV+F ++ A+ ++ G+L + + + +G
Sbjct: 195 KGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTS 254
Query: 201 --LFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSK 258
+ Q + P T ++V NL + TDE LKQ+F +G + V + +
Sbjct: 255 KASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGEL----VHVKIPSGKR 310
Query: 259 CFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGRA 294
C GFV F SA A+ LNGT + V L GR+
Sbjct: 311 C-GFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRS 346
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 135/285 (47%), Gaps = 14/285 (4%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
++I +L +D L++ F+ G V S KV + + QS+GYGF++F + A+ +
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 188 NGMLIND--KKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLF-APFGVI 244
NG ++ + + + R + SP +T ++V +L+ +D L ++F + +
Sbjct: 136 NGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYT-IFVGDLAADVSDHHLTEVFRTRYNSV 194
Query: 245 TSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAE 303
A V+ D G +K +GFV F A+ ++ G + + + G A K
Sbjct: 195 KGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGV-LCSTRPMRIGPASNKNLGTQT 253
Query: 304 LRAKFE--QERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNS 361
+A ++ Q ++V NLD N+ DE LK +F+++G + K+ +
Sbjct: 254 SKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIP-----SG 308
Query: 362 KGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKAR 406
K GFV F+ A +A+ +NG L+G + + ++ + +++ +
Sbjct: 309 KRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQ 353
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 28/278 (10%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L++GDL+ ++E LY F ++ S++V R++ S GY ++ F A L+
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 100 LNFT--PVNGKPIRI---MFSQRDPSIRKSGYAN--VFIKNLDTSIDNKALHDTF-AAFG 151
N T P G+ R+ FS + S R+ + +F+ +L + + L +TF A +
Sbjct: 121 YNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYN 180
Query: 152 PVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVR------ 204
V KV +D +G+SKGYGFV+F ++ A+ ++ G+L + + + +G
Sbjct: 181 SVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAAT 240
Query: 205 -------HQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNS 257
+ G++ P T ++V NL + TD+ L+Q+F +G + V +
Sbjct: 241 TQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGEL----VHVKIPSGK 296
Query: 258 KCFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGRA 294
+C GFV F A A+ LNGT + V L GR
Sbjct: 297 RC-GFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRT 333
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 131/285 (45%), Gaps = 13/285 (4%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
++I +L +D L+ F G + S KV + + QS+GYGF++F+ A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 188 NGMLI----NDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLF-APFG 242
NG ++ + ++ F + R + P T ++V +L+ TD L++ F A +
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHT-IFVGDLAADVTDYLLQETFRARYN 180
Query: 243 VITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAERE 301
+ A V+ D + G SK +GFV F A+ ++ G + + +
Sbjct: 181 SVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAAT 240
Query: 302 AELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNS 361
+ +A + ++V NLD N+ D+ L+ +F+++G + K+ +
Sbjct: 241 TQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIP-----SG 295
Query: 362 KGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKAR 406
K GFV FS A +A+ +NG L+G + + ++ + +++ +
Sbjct: 296 KRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQ 340
>Medtr1723s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | scaffold1723:1189-955 | 20130731
Length = 78
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 55/61 (90%)
Query: 32 GGGPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQ 91
G G F NASLYVGDLEGNVNEAQLY+LF+Q+ Q+VSIRVCRDQT R SLGYAYVNF+NA+
Sbjct: 18 GTGLFENASLYVGDLEGNVNEAQLYELFNQIGQVVSIRVCRDQTMRLSLGYAYVNFSNAR 77
Query: 92 D 92
D
Sbjct: 78 D 78
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 45/295 (15%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
++++GDL ++E L++ F+ ++ S +V R++ S GY +V F A L+
Sbjct: 117 TIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQN 176
Query: 100 LNFT--PVNGKPIRIMFSQRDPS----IRKSGYA----NVFIKNLDTSIDNKALHDTFAA 149
N T P + R+ ++ + R+S A +VF+ +L + + L +TFA+
Sbjct: 177 FNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFAS 236
Query: 150 -FGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQE 207
F + KV +D+ +G+SKGYGFV+F ++ A+ ++NG+ + + + VG+ +
Sbjct: 237 KFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKT 296
Query: 208 RG---------------------------RANGSPKFTNVYVKNLSESCTDEDLKQLFAP 240
G ++ G T ++V L +DEDL+Q F
Sbjct: 297 YGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQ 356
Query: 241 FGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGRA 294
FG + S + K GFV +A A++ LNGT I V L GR+
Sbjct: 357 FGDVISVKIPV-----GKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRS 406
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 12/187 (6%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEK 277
+++ +L + L FA G + SA V+++ G S+ +GFV F + A ++
Sbjct: 117 TIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQN 176
Query: 278 LNGTTI-NDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
NGT + N D+ A A A ER S E +++V +L ++ D
Sbjct: 177 FNGTMMPNTDQAFRLNWATFSA-------AGGGGERRSS-EATSDLSVFVGDLAIDVTDA 228
Query: 337 KLKDLF-SEFGTITSFKVMLDS-YGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYV 394
L++ F S+F +I KV++DS G SKG GFV F E +AMTEMNG +P+ V
Sbjct: 229 MLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRV 288
Query: 395 AVAQRKE 401
VA K+
Sbjct: 289 GVATPKK 295
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 128/276 (46%), Gaps = 48/276 (17%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
S+YVG++ V+E L +LFS + ++ R + +SS Y +V++ + AA A+
Sbjct: 47 SVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKE--KSS--YGFVDYFDRSSAAIAIVT 102
Query: 100 LNFTPVNGKPIRIMFS----QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLS 155
LN + G+ I++ ++ QR+ + SG+ ++F+ +L + + L+ F+A+
Sbjct: 103 LNGRNIFGQSIKVNWAYTRGQREDT---SGHFHIFVGDLSPEVTDATLYACFSAYSSCSD 159
Query: 156 CKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGS 214
+V D +G+S+G+GFV F N + AQ+AIN L G + +++ + N S
Sbjct: 160 ARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQS 219
Query: 215 -----------------------------PKFTNVYVKNLSESCTDEDLKQLFAPFGV-- 243
P++T VYV NL+ T DL F GV
Sbjct: 220 SESKSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGT 279
Query: 244 ITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
I V +D K FGFV + + AA A++ N
Sbjct: 280 IEDVRVQRD-----KGFGFVRYSTHGEAALAIQMGN 310
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 129/301 (42%), Gaps = 32/301 (10%)
Query: 119 PSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDE 178
P S +V++ N+ + L + F++ G + CK+ + YGFV + +
Sbjct: 38 PGFDSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRK---EKSSYGFVDYFDRS 94
Query: 179 AAQNAINKLNGMLINDKKVYVGL-FVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQL 237
+A AI LNG I + + V + R Q R + S F +++V +LS TD L
Sbjct: 95 SAAIAIVTLNGRNIFGQSIKVNWAYTRGQ---REDTSGHF-HIFVGDLSPEVTDATLYAC 150
Query: 238 FAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVL--YAGRA 294
F+ + + A VM D G S+ FGFV+F + A +A+ L G + ++ +A +
Sbjct: 151 FSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKG 210
Query: 295 --------QRKAEREAELRAKFEQERI------SRYEKLQGANLYVKNLDDNINDEKLKD 340
+++ EL + +E S + Q +YV NL + L
Sbjct: 211 ANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHH 270
Query: 341 LFSEFG--TITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQ 398
F G TI +V D KG GFV +ST EA A+ N + + KP+ +
Sbjct: 271 HFHALGVGTIEDVRVQRD-----KGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWGS 325
Query: 399 R 399
+
Sbjct: 326 K 326
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 46/297 (15%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L++GDL+ V+E L FS +++SI++ R++ GY ++ F + A L+
Sbjct: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
Query: 100 LNFTPVNG--KPIRIMFSQRDPSIRKSGYA---NVFIKNLDTSIDNKALHDTF-AAFGPV 153
N T + G + R+ ++ R+ ++F+ +L + + L +TF +G V
Sbjct: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
Query: 154 LSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRAN 212
KV D +G+SKGYGFV+F ++ A++++NG+ + + + + + G
Sbjct: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQ 195
Query: 213 GS-----------------------------PKF----TNVYVKNLSESCTDEDLKQLFA 239
P++ T +YV NL + ++E+LKQ F
Sbjct: 196 NPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFL 255
Query: 240 PFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGRAQ 295
FG I S V K GFV F + SA A++K+ G + + + GR Q
Sbjct: 256 QFGEIVSVKVHP-----GKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGRPQ 307
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 152/363 (41%), Gaps = 80/363 (22%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINK 186
++I +L +D L F+ G V+S K+ + +GQ +GYGF++F + AA+ +
Sbjct: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
Query: 187 LNG---------MLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQL 237
NG +N +G ER R + P + ++V +L+ TD L++
Sbjct: 76 YNGTQMPGTEQTFRLNWASFGIG------ER-RPDAGPDHS-IFVGDLAPDVTDYLLQET 127
Query: 238 F-APFGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQ 295
F +G + A V+ D N G SK +GFV F A+ ++NG V + R
Sbjct: 128 FRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNG-------VYCSTRPM 180
Query: 296 RKAEREAELRAKFEQER----------------ISRYEK-----------LQGANLYVKN 328
R + + ++Q + Y + +YV N
Sbjct: 181 RISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGN 240
Query: 329 LDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVG 388
LD N+++E+LK F +FG I S KV K GFV F A +A+ +M GK++G
Sbjct: 241 LDLNVSEEELKQNFLQFGEIVSVKVH-----PGKACGFVQFGARASAEEAIQKMQGKILG 295
Query: 389 RKPLYVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGS 448
++ + V+ + + R+ VPGG G + + YYG G
Sbjct: 296 QQVIRVSWGRPQTARQ----------DVPGGW--------GQQVDQSQWS---AYYGYGQ 334
Query: 449 PGF 451
PG+
Sbjct: 335 PGY 337
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 135/291 (46%), Gaps = 48/291 (16%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P S+YVG++ V E L ++F+ + ++ R + +SS Y ++++ + + AA
Sbjct: 58 PSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKE--KSS--YGFIHYFDRRSAA 113
Query: 95 NALELLNFTPVNGKPIRIMFS----QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A+ LN + G+PI++ ++ QR+ + SG+ N+F+ +L + + L F+ +
Sbjct: 114 LAILTLNGRHLFGQPIKVNWAYASGQREDT---SGHYNIFVGDLSPEVTDATLFACFSVY 170
Query: 151 GPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLI----------------- 192
+V D +G+S+G+GFV F + + AQ+AIN L G +
Sbjct: 171 QSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGI 230
Query: 193 -----NDKKVYVGLFVRHQERGRANGS-------PKFTNVYVKNLSESCTDEDLKQLFAP 240
+D K V L E G+ S P++T VYV NL T DL + F
Sbjct: 231 EEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHA 290
Query: 241 F--GVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVL 289
GVI V +D K FGFV + + AA A++ N + K++
Sbjct: 291 LGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNAQSYLCGKII 336
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 123/307 (40%), Gaps = 52/307 (16%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDND 177
DPS +S V++ N+ T + L + FA GPV CK+ + YGF+ + +
Sbjct: 57 DPSTCRS----VYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDR 109
Query: 178 EAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQL 237
+A AI LNG + + + V +R +G N++V +LS TD L
Sbjct: 110 RSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSG---HYNIFVGDLSPEVTDATLFAC 166
Query: 238 FAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQR 296
F+ + + A VM D G S+ FGFV+F S A +A+ L G + ++ R
Sbjct: 167 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI----RCNW 222
Query: 297 KAEREAELRAKFEQERISRYEKLQGAN--------------------LYVKNLDDNINDE 336
+ + K + S E G++ +YV NL
Sbjct: 223 ATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQL 282
Query: 337 KLKDLFSEF--GTITSFKVMLDSYGNSKGSGFVAFSTPEEA------NQAMTEMNGKLV- 387
L F G I +V D KG GFV +ST EA A + + GK++
Sbjct: 283 DLHRHFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIK 337
Query: 388 ---GRKP 391
G KP
Sbjct: 338 CSWGSKP 344
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 24/184 (13%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
+VYV N+ T+ L+++FA G + + + +GF+++ SAA A+ L
Sbjct: 63 SVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTL 119
Query: 279 NGTTINDD--KVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
NG + KV +A + ++ + N++V +L + D
Sbjct: 120 NGRHLFGQPIKVNWAYASGQREDTSGHY------------------NIFVGDLSPEVTDA 161
Query: 337 KLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L FS + + + +VM D G S+G GFV+F + ++A A+ ++ GK +G + +
Sbjct: 162 TLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCN 221
Query: 396 VAQR 399
A +
Sbjct: 222 WATK 225
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 134/277 (48%), Gaps = 41/277 (14%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
S+YVG++ NV + L ++F + ++ R + +SS Y +V++ + AA A+
Sbjct: 45 SVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKE--KSS--YGFVDYHDRASAALAIMT 100
Query: 100 LNFTPVNGKPIRIMFSQRDPSIR-KSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV 158
L+ + G+ +++ ++ + S SG+ NVF+ +L + + L F+ + +V
Sbjct: 101 LHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARV 160
Query: 159 AVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVR------HQER--- 208
D +G+SKGYGFV F + + AQ+AIN + G + ++++ + ++E+
Sbjct: 161 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 220
Query: 209 ---------GRANG------------SPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSA 247
G ++G +P +T VYV NL T +L F G A
Sbjct: 221 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG----A 276
Query: 248 TVMKDVNGNS-KCFGFVNFESPDSAAAAVEKLNGTTI 283
V+++V S K FGFV + + + AA A++ NG +
Sbjct: 277 GVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPV 313
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 127/299 (42%), Gaps = 27/299 (9%)
Query: 119 PSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDE 178
P S +V++ N+ ++ +K L + F + GP+ CK+ + YGFV + +
Sbjct: 36 PGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRK---EKSSYGFVDYHDRA 92
Query: 179 AAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLF 238
+A AI L+G + + + V + R +G NV+V +LS TD L F
Sbjct: 93 SAALAIMTLHGRQLYGQALKVNWAYANSSREDTSG---HFNVFVGDLSPEVTDATLFACF 149
Query: 239 APFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVL--YAGRAQ 295
+ + + A VM D G SK +GFV+F A +A+ + G + + ++ +A +
Sbjct: 150 SVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGA 209
Query: 296 RKAEREAELRAKFEQERISRYEKLQG---------------ANLYVKNLDDNINDEKLKD 340
+ E ++ ++ G +YV NL ++ +L
Sbjct: 210 GGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHC 269
Query: 341 LFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQR 399
F G +V + S KG GFV ++T EEA A+ NG+ V K + + +
Sbjct: 270 QFHALGAGVLEEVRVQS---GKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSK 325
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 134/277 (48%), Gaps = 41/277 (14%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
S+YVG++ NV + L ++F + ++ R + +SS Y +V++ + AA A+
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKE--KSS--YGFVDYHDRASAALAIMT 116
Query: 100 LNFTPVNGKPIRIMFSQRDPSIR-KSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV 158
L+ + G+ +++ ++ + S SG+ NVF+ +L + + L F+ + +V
Sbjct: 117 LHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARV 176
Query: 159 AVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVR------HQER--- 208
D +G+SKGYGFV F + + AQ+AIN + G + ++++ + ++E+
Sbjct: 177 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 236
Query: 209 ---------GRANG------------SPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSA 247
G ++G +P +T VYV NL T +L F G A
Sbjct: 237 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG----A 292
Query: 248 TVMKDVNGNS-KCFGFVNFESPDSAAAAVEKLNGTTI 283
V+++V S K FGFV + + + AA A++ NG +
Sbjct: 293 GVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPV 329
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 127/299 (42%), Gaps = 27/299 (9%)
Query: 119 PSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDE 178
P S +V++ N+ ++ +K L + F + GP+ CK+ + YGFV + +
Sbjct: 52 PGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRK---EKSSYGFVDYHDRA 108
Query: 179 AAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLF 238
+A AI L+G + + + V + R +G NV+V +LS TD L F
Sbjct: 109 SAALAIMTLHGRQLYGQALKVNWAYANSSREDTSG---HFNVFVGDLSPEVTDATLFACF 165
Query: 239 APFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVL--YAGRAQ 295
+ + + A VM D G SK +GFV+F A +A+ + G + + ++ +A +
Sbjct: 166 SVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGA 225
Query: 296 RKAEREAELRAKFEQERISRYEKLQG---------------ANLYVKNLDDNINDEKLKD 340
+ E ++ ++ G +YV NL ++ +L
Sbjct: 226 GGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHC 285
Query: 341 LFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQR 399
F G +V + S KG GFV ++T EEA A+ NG+ V K + + +
Sbjct: 286 QFHALGAGVLEEVRVQS---GKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSK 341
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 134/277 (48%), Gaps = 41/277 (14%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
S+YVG++ NV + L ++F + ++ R + +SS Y +V++ + AA A+
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKE--KSS--YGFVDYHDRASAALAIMT 116
Query: 100 LNFTPVNGKPIRIMFSQRDPSIR-KSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV 158
L+ + G+ +++ ++ + S SG+ NVF+ +L + + L F+ + +V
Sbjct: 117 LHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARV 176
Query: 159 AVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVR------HQER--- 208
D +G+SKGYGFV F + + AQ+AIN + G + ++++ + ++E+
Sbjct: 177 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 236
Query: 209 ---------GRANG------------SPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSA 247
G ++G +P +T VYV NL T +L F G A
Sbjct: 237 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG----A 292
Query: 248 TVMKDVNGNS-KCFGFVNFESPDSAAAAVEKLNGTTI 283
V+++V S K FGFV + + + AA A++ NG +
Sbjct: 293 GVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPV 329
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 127/299 (42%), Gaps = 27/299 (9%)
Query: 119 PSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDE 178
P S +V++ N+ ++ +K L + F + GP+ CK+ + YGFV + +
Sbjct: 52 PGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRK---EKSSYGFVDYHDRA 108
Query: 179 AAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLF 238
+A AI L+G + + + V + R +G NV+V +LS TD L F
Sbjct: 109 SAALAIMTLHGRQLYGQALKVNWAYANSSREDTSG---HFNVFVGDLSPEVTDATLFACF 165
Query: 239 APFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVL--YAGRAQ 295
+ + + A VM D G SK +GFV+F A +A+ + G + + ++ +A +
Sbjct: 166 SVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGA 225
Query: 296 RKAEREAELRAKFEQERISRYEKLQG---------------ANLYVKNLDDNINDEKLKD 340
+ E ++ ++ G +YV NL ++ +L
Sbjct: 226 GGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHC 285
Query: 341 LFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQR 399
F G +V + S KG GFV ++T EEA A+ NG+ V K + + +
Sbjct: 286 QFHALGAGVLEEVRVQS---GKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSK 341
>Medtr0989s0020.1 | polyadenylate-binding-like protein | LC |
scaffold0989:3645-3014 | 20130731
Length = 89
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 580 QRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRVLRD 639
Q MLGE+LYPLV LTPN TAKVTGMLLE+DQ EVIHLIESPE+LK+KVSEA+ VLR
Sbjct: 12 QNQMLGENLYPLVGRLTPNNQTAKVTGMLLELDQLEVIHLIESPEELKIKVSEAMEVLRK 71
Query: 640 AA 641
+
Sbjct: 72 VS 73
>Medtr0913s0010.1 | polyadenylate-binding-like protein | LC |
scaffold0913:147-359 | 20130731
Length = 70
Score = 92.8 bits (229), Expect = 9e-19, Method: Composition-based stats.
Identities = 48/71 (67%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Query: 583 MLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRVLRDAAA 642
ML EHL+PLV L P TAKVT MLLEMDQSEVIHLIESPE+LKMKV+EA+R LR+A+
Sbjct: 1 MLEEHLHPLVGRLAPTNQTAKVTRMLLEMDQSEVIHLIESPEELKMKVAEAMRFLREASQ 60
Query: 643 PGSEVSDQLGS 653
G V D++ S
Sbjct: 61 -GPAVGDKIDS 70
>Medtr1889s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| LC | scaffold1889:421-1063 | 20130731
Length = 88
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 48/61 (78%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDA 93
G F NASLYVGDLE VNEAQLY+ Q+ ++S+RVCRDQ +SSLGY YVNF+NA+D
Sbjct: 15 GGFENASLYVGDLERKVNEAQLYEPLYQIGHVISVRVCRDQMTQSSLGYGYVNFSNARDG 74
Query: 94 A 94
+
Sbjct: 75 S 75
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 13/204 (6%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
N +L+VGDL ++E L+ F+ +I SI+V R++ + GY +V F + A L
Sbjct: 92 NKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVL 151
Query: 98 ELLN--FTPVNGKPIRIMFSQRDPSIRKSGY----ANVFIKNLDTSIDNKALHDTFAAFG 151
+ P +P R+ ++ K ++F+ +L + + L +TF+
Sbjct: 152 QTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKY 211
Query: 152 P-VLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVR----- 204
P V + KV DA +G+SKGYGFV+F +D A+N++NG+ + + + +G
Sbjct: 212 PSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSG 271
Query: 205 HQERGRANGSPKFTNVYVKNLSES 228
+Q+ G++NG+P ++ N + S
Sbjct: 272 YQQGGQSNGTPSQSDTDSTNTTVS 295
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+++ +L +D LH FA+ G + S KV + + Q++GYGFV+F + A+ +
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 188 NGMLINDK----KVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFA-PFG 242
GML+ + ++ F + R++ P + ++V +L+ TD L + F+ +
Sbjct: 155 AGMLMPNTEQPFRLNWATFSTGDHK-RSDNVPDLS-IFVGDLAADVTDTMLLETFSDKYP 212
Query: 243 VITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQR 296
+ +A V+ D N G SK +GFV F + A+ ++NG V + RA R
Sbjct: 213 SVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNG-------VFCSSRAMR 260
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 22/205 (10%)
Query: 203 VRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFG 261
V H G + K ++V +L + L + FA G I S V+++ ++ +G
Sbjct: 80 VPHVHHGSSAADNK--TLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYG 137
Query: 262 FVNFESPDSAAAAVEKLNGTTINDDKVL--YAGRAQRKAEREAEL-RAKFEQERISRYEK 318
FV F S +A +KVL YAG E+ L A F R +
Sbjct: 138 FVEFTSHGTA--------------EKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDN 183
Query: 319 LQGANLYVKNLDDNINDEKLKDLFSE-FGTITSFKVMLDS-YGNSKGSGFVAFSTPEEAN 376
+ +++V +L ++ D L + FS+ + ++ + KV+ D+ G SKG GFV F E +
Sbjct: 184 VPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERS 243
Query: 377 QAMTEMNGKLVGRKPLYVAVAQRKE 401
+A+ EMNG + + + A ++
Sbjct: 244 KALNEMNGVFCSSRAMRIGAATPRK 268
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 12/189 (6%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
N +L++GDL ++E+ L+ F+ +I S++V R++ S GY + F + A L
Sbjct: 96 NKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVL 155
Query: 98 ELLN--FTPVNGKPIRI---MFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP 152
+ P + R+ FS D ++F+ +L + + LH+TF++ P
Sbjct: 156 QNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYP 215
Query: 153 -VLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVR-----H 205
V + KV DA +G+SKGYGFV+F ++ A+ ++NG+ + + + +G H
Sbjct: 216 SVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGH 275
Query: 206 QERGRANGS 214
Q G++NG+
Sbjct: 276 QPGGQSNGT 284
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 4/175 (2%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINK 186
++I +L + +D LH FA+ G + S KV + SG S+GYGF +F + A+ +
Sbjct: 98 TLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQN 157
Query: 187 LNGMLI-NDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAP-FGVI 244
G+L+ N + + + + + + +++V +L+ TD L + F+ + +
Sbjct: 158 YAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSV 217
Query: 245 TSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKA 298
+A V+ D N G SK +GFV F + A+ ++NG + + RK+
Sbjct: 218 KAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKS 272
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Query: 211 ANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPD 269
+NG K +++ +L + L + FA G ITS V+++ + G S+ +GF F S
Sbjct: 92 SNGENK--TLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHA 149
Query: 270 SAAAAVEKLNGTTINDDKVL--YAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVK 327
+A +KVL YAG A++ L + + +++V
Sbjct: 150 TA--------------EKVLQNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVG 195
Query: 328 NLDDNINDEKLKDLFSE-FGTITSFKVMLDS-YGNSKGSGFVAFSTPEEANQAMTEMNGK 385
+L ++ D L + FS + ++ + KV+ D+ G SKG GFV F E +QAMT+MNG
Sbjct: 196 DLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGV 255
Query: 386 LVGRKPLYVAVAQRKE 401
+P+ + A ++
Sbjct: 256 YCSSRPMRIGAATPRK 271
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 16/248 (6%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +YVG + + L + ++ ++V +R+ + + + G+A+V + N + A+
Sbjct: 106 PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELAS 165
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
A+E LN T G+ I+ SQ +FI N+ S K L GP V
Sbjct: 166 KAIEELNNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGV 217
Query: 154 LSCKVAVDASGQS--KGYGFVQFDNDEAAQNAINKL--NGMLINDKKVYVGLFVRHQERG 209
+ ++ D S +G+ F+ + N++ A+ K+ + D V +
Sbjct: 218 TAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA--DPKNS 275
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFESP 268
++ S + VYVKNL ++ T E LK+LF G IT + +G K GFV+F
Sbjct: 276 DSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAER 335
Query: 269 DSAAAAVE 276
+A A++
Sbjct: 336 SNAMKALK 343
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 157/369 (42%), Gaps = 59/369 (15%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV--AVDASGQSKGYGFVQFDNDEAAQNAI 184
+ V++ + ++ L + G V+ ++ DAS ++KG+ FV + N E A AI
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDAS-ENKGFAFVTYRNVELASKAI 168
Query: 185 NKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV- 243
+LN +K+ + + S +++ N+ S ++DLK++ G
Sbjct: 169 EELNNTEFKGRKI------------KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPG 216
Query: 244 ITSATVMKDVN--GNSKCFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRK 297
+T+ ++KD+ N++ F F+++ + A +K+ + N V +A
Sbjct: 217 VTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSD 276
Query: 298 AEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDS 357
+ ++++A +YVKNL N+ E+LK LF G IT +
Sbjct: 277 SSASSQVKA-----------------VYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPK 319
Query: 358 YGNSKGS-GFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHFAQIQV 416
G K GFV F+ A +A+ + + L ++A+ + D+KA + Q +
Sbjct: 320 SGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAVVSNTQTQGLL 379
Query: 417 PG-------GMAPLPAGIPGYHAGTPRLAPQQLYYGQG-SPGFMPPQPA-------GYGF 461
P G+ P G G G P LA Q L YG G +PG M P GY
Sbjct: 380 PSYPPPVGYGLVGNPYGALGAGYGAPGLA-QPLMYGPGQTPGGMAMMPMLLADGRIGYVL 438
Query: 462 QQQMLPGMR 470
QQ PG++
Sbjct: 439 QQ---PGLQ 444
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 16/248 (6%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +YVG + + L + ++ ++V +R+ + + + G+A+V + N + A+
Sbjct: 106 PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELAS 165
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
A+E LN T G+ I+ SQ +FI N+ S K L GP V
Sbjct: 166 KAIEELNNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGV 217
Query: 154 LSCKVAVDASGQS--KGYGFVQFDNDEAAQNAINKL--NGMLINDKKVYVGLFVRHQERG 209
+ ++ D S +G+ F+ + N++ A+ K+ + D V +
Sbjct: 218 TAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA--DPKNS 275
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFESP 268
++ S + VYVKNL ++ T E LK+LF G IT + +G K GFV+F
Sbjct: 276 DSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAER 335
Query: 269 DSAAAAVE 276
+A A++
Sbjct: 336 SNAMKALK 343
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 157/369 (42%), Gaps = 59/369 (15%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV--AVDASGQSKGYGFVQFDNDEAAQNAI 184
+ V++ + ++ L + G V+ ++ DAS ++KG+ FV + N E A AI
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDAS-ENKGFAFVTYRNVELASKAI 168
Query: 185 NKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV- 243
+LN +K+ + + S +++ N+ S ++DLK++ G
Sbjct: 169 EELNNTEFKGRKI------------KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPG 216
Query: 244 ITSATVMKDVN--GNSKCFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRK 297
+T+ ++KD+ N++ F F+++ + A +K+ + N V +A
Sbjct: 217 VTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSD 276
Query: 298 AEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDS 357
+ ++++A +YVKNL N+ E+LK LF G IT +
Sbjct: 277 SSASSQVKA-----------------VYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPK 319
Query: 358 YGNSKGS-GFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHFAQIQV 416
G K GFV F+ A +A+ + + L ++A+ + D+KA + Q +
Sbjct: 320 SGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAVVSNTQTQGLL 379
Query: 417 PG-------GMAPLPAGIPGYHAGTPRLAPQQLYYGQG-SPGFMPPQPA-------GYGF 461
P G+ P G G G P LA Q L YG G +PG M P GY
Sbjct: 380 PSYPPPVGYGLVGNPYGALGAGYGAPGLA-QPLMYGPGQTPGGMAMMPMLLADGRIGYVL 438
Query: 462 QQQMLPGMR 470
QQ PG++
Sbjct: 439 QQ---PGLQ 444
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 16/248 (6%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +YVG + + L + ++ ++V +R+ + + + G+A+V + N + A+
Sbjct: 106 PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELAS 165
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
A+E LN T G+ I+ SQ +FI N+ S K L GP V
Sbjct: 166 KAIEELNNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGV 217
Query: 154 LSCKVAVDASGQS--KGYGFVQFDNDEAAQNAINKL--NGMLINDKKVYVGLFVRHQERG 209
+ ++ D S +G+ F+ + N++ A+ K+ + D V +
Sbjct: 218 TAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA--DPKNS 275
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFESP 268
++ S + VYVKNL ++ T E LK+LF G IT + +G K GFV+F
Sbjct: 276 DSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAER 335
Query: 269 DSAAAAVE 276
+A A++
Sbjct: 336 SNAMKALK 343
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 157/369 (42%), Gaps = 59/369 (15%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV--AVDASGQSKGYGFVQFDNDEAAQNAI 184
+ V++ + ++ L + G V+ ++ DAS ++KG+ FV + N E A AI
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDAS-ENKGFAFVTYRNVELASKAI 168
Query: 185 NKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV- 243
+LN +K+ + + S +++ N+ S ++DLK++ G
Sbjct: 169 EELNNTEFKGRKI------------KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPG 216
Query: 244 ITSATVMKDVN--GNSKCFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRK 297
+T+ ++KD+ N++ F F+++ + A +K+ + N V +A
Sbjct: 217 VTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSD 276
Query: 298 AEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDS 357
+ ++++A +YVKNL N+ E+LK LF G IT +
Sbjct: 277 SSASSQVKA-----------------VYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPK 319
Query: 358 YGNSKGS-GFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHFAQIQV 416
G K GFV F+ A +A+ + + L ++A+ + D+KA + Q +
Sbjct: 320 SGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAVVSNTQTQGLL 379
Query: 417 PG-------GMAPLPAGIPGYHAGTPRLAPQQLYYGQG-SPGFMPPQPA-------GYGF 461
P G+ P G G G P LA Q L YG G +PG M P GY
Sbjct: 380 PSYPPPVGYGLVGNPYGALGAGYGAPGLA-QPLMYGPGQTPGGMAMMPMLLADGRIGYVL 438
Query: 462 QQQMLPGMR 470
QQ PG++
Sbjct: 439 QQ---PGLQ 444
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 96/180 (53%), Gaps = 14/180 (7%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L+VG+L +++ +QL LF + +VS+ + D S G+A+V N +DA A+ +
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 101 NFTPVNGKPIRIMFSQRDPSIRK--------SGYAN----VFIKNLDTSIDNKALHDTFA 148
+ T V G+ I++ F + P + K GY + ++ NL + ++ L FA
Sbjct: 170 DGTTVGGRAIKVNFPEV-PIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFA 228
Query: 149 AFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQE 207
+LS KV + +G+S+GYGFV F+ E + A++ +NG+ + + + + L V +++
Sbjct: 229 KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVDNRK 288
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVM-KDVNGNSKCFGFVNFESPDSAAAAVEKL 278
++V NL S + L QLF G + S ++ D+ S+ F FV + + A A+
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQG-----ANLYVKNLDDNI 333
+GTT+ GRA + E + K R+ +G +Y NL ++
Sbjct: 170 DGTTV-------GGRAIKVNFPEVPIVGK----RVQMGSTYRGYVDSPHKIYAGNLGWDM 218
Query: 334 NDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPL 392
+ L+ F++ + S KV+ + + G S+G GFV+F T E+ A++ MNG V +PL
Sbjct: 219 TSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPL 278
Query: 393 YVAVA 397
+ +A
Sbjct: 279 RLKLA 283
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 96/180 (53%), Gaps = 14/180 (7%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L+VG+L +++ +QL LF + +VS+ + D S G+A+V N +DA A+ +
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 101 NFTPVNGKPIRIMFSQRDPSIRK--------SGYAN----VFIKNLDTSIDNKALHDTFA 148
+ T V G+ I++ F + P + K GY + ++ NL + ++ L FA
Sbjct: 170 DGTTVGGRAIKVNFPEV-PIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFA 228
Query: 149 AFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQE 207
+LS KV + +G+S+GYGFV F+ E + A++ +NG+ + + + + L V +++
Sbjct: 229 KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVDNRK 288
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVM-KDVNGNSKCFGFVNFESPDSAAAAVEKL 278
++V NL S + L QLF G + S ++ D+ S+ F FV + + A A+
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQG-----ANLYVKNLDDNI 333
+GTT+ GRA + E + K R+ +G +Y NL ++
Sbjct: 170 DGTTV-------GGRAIKVNFPEVPIVGK----RVQMGSTYRGYVDSPHKIYAGNLGWDM 218
Query: 334 NDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPL 392
+ L+ F++ + S KV+ + + G S+G GFV+F T E+ A++ MNG V +PL
Sbjct: 219 TSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPL 278
Query: 393 YVAVA 397
+ +A
Sbjct: 279 RLKLA 283
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 9/170 (5%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L++GDL+ ++E LY F ++ S++V R++ S GY ++ F A L+
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 100 LNFT--PVNGKPIRI---MFSQRDPSIRKSGYAN--VFIKNLDTSIDNKALHDTF-AAFG 151
N T P G+ R+ FS + S R+ + +F+ +L + + L +TF A +
Sbjct: 121 YNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYN 180
Query: 152 PVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG 200
V KV +D +G+SKGYGFV+F ++ A+ ++ G+L + + + +G
Sbjct: 181 SVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEK 277
+++ +L + L F G +TS V+++ S+ +GF+ F + +A ++
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
NGT + + Q A A ER SR + ++V +L ++ D
Sbjct: 121 YNGTIMPNG-------GQNYRLNWATFSAG---ERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 338 LKDLF-SEFGTITSFKVMLDSY-GNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L++ F + + ++ KV++D G SKG GFV F+ E +AMTEM G L +P+ +
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
Query: 396 VAQRK 400
A K
Sbjct: 231 PATNK 235
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 9/170 (5%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L++GDL+ ++E LY F ++ S++V R++ S GY ++ F A L+
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 100 LNFT--PVNGKPIRI---MFSQRDPSIRKSGYAN--VFIKNLDTSIDNKALHDTF-AAFG 151
N T P G+ R+ FS + S R+ + +F+ +L + + L +TF A +
Sbjct: 121 YNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYN 180
Query: 152 PVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG 200
V KV +D +G+SKGYGFV+F ++ A+ ++ G+L + + + +G
Sbjct: 181 SVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEK 277
+++ +L + L F G +TS V+++ S+ +GF+ F + +A ++
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
NGT + + Q A A ER SR + ++V +L ++ D
Sbjct: 121 YNGTIMPNG-------GQNYRLNWATFSAG---ERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 338 LKDLF-SEFGTITSFKVMLDSY-GNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L++ F + + ++ KV++D G SKG GFV F+ E +AMTEM G L +P+ +
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
Query: 396 VAQRK 400
A K
Sbjct: 231 PATNK 235
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 128/286 (44%), Gaps = 13/286 (4%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +YVG + + L + + ++V +R+ + + + G+A+V + + + A+
Sbjct: 346 PHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELAS 405
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
A++ LN T I+ SQ + +FI N+ S K L + GP V
Sbjct: 406 KAIKELNNTEFKAGKIKCSKSQ--------AKSRLFIGNIPRSWGEKDLKKVVSDIGPGV 457
Query: 154 LSCKVAVDASGQS--KGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRA 211
+ ++ D S +GY F+ + N++ A+ + K+ + + + +
Sbjct: 458 TAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEPKNADS 517
Query: 212 NGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFESPDS 270
+ S + VYVKNL ++ T E LK+LF G IT + G K GFV+F +
Sbjct: 518 SASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSN 577
Query: 271 AAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRY 316
A A++ + D ++L A+++A+ +A + Q + RY
Sbjct: 578 AMKALKNTEKYVL-DGQILECSLAKQQADPKAVVSNIQTQGSLPRY 622
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/376 (22%), Positives = 157/376 (41%), Gaps = 57/376 (15%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV--AVDASGQSKGYGFVQFDNDEAAQNAI 184
+ V++ + + L + G V+ ++ DAS +++G+ FV + + E A AI
Sbjct: 350 SEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDAS-ENRGFAFVTYRSIELASKAI 408
Query: 185 NKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV- 243
+LN K+ + Q + R +++ N+ S ++DLK++ + G
Sbjct: 409 KELNNTEFKAGKIKCS---KSQAKSR---------LFIGNIPRSWGEKDLKKVVSDIGPG 456
Query: 244 ITSATVMKDVN--GNSKCFGFVNFESPDSAAAAVEKLNGTT--INDDKVLYAGRAQRKAE 299
+T+ ++KD+ N++ + F+++ + A + +K+ + + D+ + A+
Sbjct: 457 VTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEPKNAD 516
Query: 300 REAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYG 359
A + K +YVKNL N+ E+LK LF G IT + G
Sbjct: 517 SSASSQVK---------------EVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPG 561
Query: 360 NSKGS-GFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHFAQIQVPG 418
K GFV F+ A +A+ ++ + L ++A+++ D KA + Q +P
Sbjct: 562 QEKNRIGFVHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPKAVVSNIQTQGSLPR 621
Query: 419 -------GMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFMPPQPAGYGFQQQMLPGMR- 470
G+ P G+ G G P LA Q YG G P G ++L R
Sbjct: 622 YPPHVGYGLDGNPYGVLGAGYGAPGLA-QPFTYGLGQ------TPGGIAMMPKLLVDRRI 674
Query: 471 ------PGVAPNFIMP 480
PG+ P+ P
Sbjct: 675 RYVLQQPGLQPHPTHP 690
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 16/248 (6%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +YVG + + L + ++ ++V +R+ + + + G+A+V + N + A+
Sbjct: 106 PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELAS 165
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
A+E LN T G+ I+ SQ +FI N+ S K L GP V
Sbjct: 166 KAIEELNNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGV 217
Query: 154 LSCKVAVDASGQS--KGYGFVQFDNDEAAQNAINKLN--GMLINDKKVYVGLFVRHQERG 209
+ ++ D S +G+ F+ + N++ A+ K+ + D V +
Sbjct: 218 TAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSW--ADPKNS 275
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFESP 268
++ S + VYVKNL ++ T E LK+LF G IT + +G K GFV+F
Sbjct: 276 DSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAER 335
Query: 269 DSAAAAVE 276
+A A++
Sbjct: 336 SNAMKALK 343
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 114/263 (43%), Gaps = 40/263 (15%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV--AVDASGQSKGYGFVQFDNDEAAQNAI 184
+ V++ + ++ L + G V+ ++ DAS ++KG+ FV + N E A AI
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDAS-ENKGFAFVTYRNVELASKAI 168
Query: 185 NKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV- 243
+LN +K+ + + S +++ N+ S ++DLK++ G
Sbjct: 169 EELNNTEFKGRKI------------KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPG 216
Query: 244 ITSATVMKDVN--GNSKCFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRK 297
+T+ ++KD+ N++ F F+++ + A +K+ + N V +A
Sbjct: 217 VTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSD 276
Query: 298 AEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDS 357
+ ++++A +YVKNL N+ E+LK LF G IT +
Sbjct: 277 SSASSQVKA-----------------VYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPK 319
Query: 358 YGNSKGS-GFVAFSTPEEANQAM 379
G K GFV F+ A +A+
Sbjct: 320 SGQEKNRIGFVHFAERSNAMKAL 342
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +++G L + ++ + +L + IV I++ +D+ S GYA+V + + A
Sbjct: 100 PPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQ 159
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
A++ ++ GK +R + S+ +FI N+ + GP V
Sbjct: 160 KAIDDIHNKEFKGKTLRCLLSETK--------HRLFIGNIPKTWTEDEFRKAVEGVGPGV 211
Query: 154 LSCKVAVDASGQS--KGYGFVQFDNDEAAQNAINKLN--GMLINDKKVYVGLFVRHQERG 209
S + D QS +G+ FV + N+ A + K++ G ++ V
Sbjct: 212 ESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD 271
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPD 269
++ + + +YVKN+ E+ T E LK+LF G +T + + FGF+++
Sbjct: 272 QSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERS 331
Query: 270 SAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAE 303
SA AV++ I D + L A+ +AE++ +
Sbjct: 332 SALKAVKETEKYEI-DGQALEVVIAKPQAEKKPD 364
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 118/289 (40%), Gaps = 41/289 (14%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
+ VFI L + + + G ++ K+ D +G+SKGY FV + E AQ AI+
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV-I 244
++ K + L S +++ N+ ++ T+++ ++ G +
Sbjct: 164 DIHNKEFKGKTLRCLL------------SETKHRLFIGNIPKTWTEDEFRKAVEGVGPGV 211
Query: 245 TSATVMKDVNGNSKCFGFVNFESPDSAAAAVE---------KLNGTTINDDKVLYAGRAQ 295
S ++KD S+ GF ++A A KL+G T V +A
Sbjct: 212 ESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPT---VTWADPKT 268
Query: 296 RKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVML 355
+ A + K LYVKN+ +N+ E+LK+LF G +T +
Sbjct: 269 SPDQSAAASQVK---------------ALYVKNIPENVTTEQLKELFRRHGEVTKVVMPP 313
Query: 356 DSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRK 404
+ GF+ ++ A +A+ E + + L V +A+ + ++K
Sbjct: 314 GKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKK 362
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +++G L + ++ + +L + IV I++ +D+ S GYA+V + + A
Sbjct: 100 PPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQ 159
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
A++ ++ GK +R + S+ +FI N+ + GP V
Sbjct: 160 KAIDDIHNKEFKGKTLRCLLSETK--------HRLFIGNIPKTWTEDEFRKAVEGVGPGV 211
Query: 154 LSCKVAVDASGQS--KGYGFVQFDNDEAAQNAINKLN--GMLINDKKVYVGLFVRHQERG 209
S + D QS +G+ FV + N+ A + K++ G ++ V
Sbjct: 212 ESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD 271
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPD 269
++ + + +YVKN+ E+ T E LK+LF G +T + + FGF+++
Sbjct: 272 QSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERS 331
Query: 270 SAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAE 303
SA AV++ I D + L A+ +AE++ +
Sbjct: 332 SALKAVKETEKYEI-DGQALEVVIAKPQAEKKPD 364
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 118/289 (40%), Gaps = 41/289 (14%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
+ VFI L + + + G ++ K+ D +G+SKGY FV + E AQ AI+
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV-I 244
++ K + L S +++ N+ ++ T+++ ++ G +
Sbjct: 164 DIHNKEFKGKTLRCLL------------SETKHRLFIGNIPKTWTEDEFRKAVEGVGPGV 211
Query: 245 TSATVMKDVNGNSKCFGFVNFESPDSAAAAVE---------KLNGTTINDDKVLYAGRAQ 295
S ++KD S+ GF ++A A KL+G T V +A
Sbjct: 212 ESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPT---VTWADPKT 268
Query: 296 RKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVML 355
+ A + K LYVKN+ +N+ E+LK+LF G +T +
Sbjct: 269 SPDQSAAASQVK---------------ALYVKNIPENVTTEQLKELFRRHGEVTKVVMPP 313
Query: 356 DSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRK 404
+ GF+ ++ A +A+ E + + L V +A+ + ++K
Sbjct: 314 GKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKK 362
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 122/274 (44%), Gaps = 14/274 (5%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +++G L + ++ + +L + IV I++ +D+ S GYA+V + + A
Sbjct: 100 PPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQ 159
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
A++ ++ GK +R + S+ +FI N+ + GP V
Sbjct: 160 KAIDDIHNKEFKGKTLRCLLSETK--------HRLFIGNIPKTWTEDEFRKAVEGVGPGV 211
Query: 154 LSCKVAVDASGQS--KGYGFVQFDNDEAAQNAINKLN--GMLINDKKVYVGLFVRHQERG 209
S + D QS +G+ FV + N+ A + K++ G ++ V
Sbjct: 212 ESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD 271
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPD 269
++ + + +YVKN+ E+ T E LK+LF G +T + + FGF+++
Sbjct: 272 QSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERS 331
Query: 270 SAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAE 303
SA AV++ I D + L A+ +AE++ +
Sbjct: 332 SALKAVKETEKYEI-DGQALEVVIAKPQAEKKPD 364
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 118/289 (40%), Gaps = 41/289 (14%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
+ VFI L + + + G ++ K+ D +G+SKGY FV + E AQ AI+
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV-I 244
++ K + L S +++ N+ ++ T+++ ++ G +
Sbjct: 164 DIHNKEFKGKTLRCLL------------SETKHRLFIGNIPKTWTEDEFRKAVEGVGPGV 211
Query: 245 TSATVMKDVNGNSKCFGFVNFESPDSAAAAVE---------KLNGTTINDDKVLYAGRAQ 295
S ++KD S+ GF ++A A KL+G T V +A
Sbjct: 212 ESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPT---VTWADPKT 268
Query: 296 RKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVML 355
+ A + K LYVKN+ +N+ E+LK+LF G +T +
Sbjct: 269 SPDQSAAASQVK---------------ALYVKNIPENVTTEQLKELFRRHGEVTKVVMPP 313
Query: 356 DSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRK 404
+ GF+ ++ A +A+ E + + L V +A+ + ++K
Sbjct: 314 GKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKK 362
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 9/170 (5%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L++GDL+ ++E LY F ++ S++V R++ S GY ++ F A L+
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 100 LNFT--PVNGKPIRI---MFSQRDPSIRKSGYAN--VFIKNLDTSIDNKALHDTF-AAFG 151
N T P G+ R+ FS + S R+ + +F+ +L + + L +TF A +
Sbjct: 121 YNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYN 180
Query: 152 PVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG 200
V KV +D +G+SKGYGFV+F ++ A+ ++ G+L + + + +G
Sbjct: 181 SVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEK 277
+++ +L + L F G +TS V+++ S+ +GF+ F + +A ++
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
NGT + + Q A A ER SR + ++V +L ++ D
Sbjct: 121 YNGTIMPNG-------GQNYRLNWATFSAG---ERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 338 LKDLF-SEFGTITSFKVMLDSY-GNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L++ F + + ++ KV++D G SKG GFV F+ E +AMTEM G L +P+ +
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
Query: 396 VAQRK 400
A K
Sbjct: 231 PATNK 235
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 102/205 (49%), Gaps = 21/205 (10%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
LYVG+L ++ +QL D+F++ +VS+ + D+ S G+A+V +A++A A+ +
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 101 NFTPVNGKPIRIMFSQ---------RDPSIRKS--GYAN----VFIKNLDTSIDNKALHD 145
+ + V G+ ++ F + +R S G+ + ++ NL ++++ L D
Sbjct: 171 DGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLRD 230
Query: 146 TFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVR 204
F +L K+ + +G+S+G+GFV F+ E + A+N +NG+ + + + + L
Sbjct: 231 AFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLAA- 289
Query: 205 HQERGRANGSPKFTNVYVKNLSESC 229
R + SP KN ES
Sbjct: 290 ----ARTSPSPPVIEENTKNNIESS 310
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 22/205 (10%)
Query: 204 RHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGF 262
+ E + S +YV NL S T L +FA G + S ++ D + S+ F F
Sbjct: 95 KQDEEQKVTTSDDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAF 154
Query: 263 VNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGA 322
V +S + A A+ +G+ + GR+ + E ER+ +K++ +
Sbjct: 155 VTMKSAEEAKEAIRMFDGSQV-------GGRSAKVNFPEVPKGG----ERLVMGQKVRNS 203
Query: 323 ---------NLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTP 372
+Y NL +N + L+D F E + K++ + G S+G GFV F T
Sbjct: 204 YRGFVDSPHKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETA 263
Query: 373 EEANQAMTEMNGKLVGRKPLYVAVA 397
E A+ MNG V +PL + +A
Sbjct: 264 EHLEAALNAMNGVEVQGRPLRLNLA 288
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 15/195 (7%)
Query: 215 PKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGN-SKCFGFVNFESPDSAAA 273
P+ ++V N E L LF G + A V+ + + S+ FGFV + + A +
Sbjct: 106 PEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAES 165
Query: 274 AVEKLNGTTINDDKVLYAGRAQRKAER-EAELRAKFEQERISRYEKLQGANLYVKNLDDN 332
AVEK NG N + L +A K R E RA E + R +YV NL
Sbjct: 166 AVEKFNGYDYNG-RSLVVNKASPKGSRPERTERAPRTFEPVLR--------IYVANLAWE 216
Query: 333 INDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKP 391
+++ +L+ +FSE G I S +V+ D G S+G GFV S E N A+ ++G+ + +
Sbjct: 217 VDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRT 276
Query: 392 LYVAVAQRKEDRKAR 406
+ V+VA EDR R
Sbjct: 277 IRVSVA---EDRPRR 288
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 12/186 (6%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P +A L+VG+ +V+ +L LF Q + V ++ S G+ +V + ++A
Sbjct: 105 PPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAE 164
Query: 95 NALELLNFTPVNGKPI----------RIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALH 144
+A+E N NG+ + R ++R P + +++ NL +DN L
Sbjct: 165 SAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEP-VLRIYVANLAWEVDNSRLE 223
Query: 145 DTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFV 203
F+ G ++S +V D +G+S+G+GFV ++ +AI L+G + + + V +
Sbjct: 224 QVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAE 283
Query: 204 RHQERG 209
RG
Sbjct: 284 DRPRRG 289
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 26/261 (9%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +Y+G + +E L + ++ +RV + + + GYA+V F + A+
Sbjct: 97 PPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAK---GYAFVTFKTKELAS 153
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
AL+ LN + G+ I+ SQ +FI ++ + + A GP V
Sbjct: 154 KALKELNNSEFKGRKIKCSPSQVK--------HRLFIGSVPKEWTVEDMKKVVAKVGPGV 205
Query: 154 LSCKVAVD--ASGQSKGYGFVQFDNDEAAQNAINKL---NGMLINDKKVYVGLFVRHQER 208
+S ++ D +S +++G+ F+++ N A+ + K+ N L N+ + R+ E
Sbjct: 206 ISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSES 265
Query: 209 GRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFES 267
++ + VYVKNL E+ T LK+LF G IT + G K +GFV+F
Sbjct: 266 SSSS---QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFAD 322
Query: 268 PDSAAAAVE-----KLNGTTI 283
SA A++ ++NG T+
Sbjct: 323 RSSAMKALKNTEKYEINGQTL 343
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 41/288 (14%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINK 186
+ V+I + K L + G V +V V ++KGY FV F E A A+ +
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEV--AEVRVMKGKEAKGYAFVTFKTKELASKALKE 158
Query: 187 LNGMLINDKKVYVGLF-VRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV-I 244
LN +K+ V+H+ +++ ++ + T ED+K++ A G +
Sbjct: 159 LNNSEFKGRKIKCSPSQVKHR-------------LFIGSVPKEWTVEDMKKVVAKVGPGV 205
Query: 245 TSATVMKDVNGNSK--CFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRKA 298
S ++KD +S+ F F+ + + A + +K++ + ND V +A ++
Sbjct: 206 ISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSES 265
Query: 299 EREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSY 358
++++A +YVKNL +NI +LK+LF G IT +
Sbjct: 266 SSSSQVKA-----------------VYVKNLPENITQNRLKELFEHHGKITKVALPPAKA 308
Query: 359 GNSKGS-GFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKA 405
G K GFV F+ A +A+ + + L ++A+ + D+K+
Sbjct: 309 GQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKS 356
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 26/261 (9%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +Y+G + +E L + ++ +RV + + + GYA+V F + A+
Sbjct: 97 PPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAK---GYAFVTFKTKELAS 153
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
AL+ LN + G+ I+ SQ +FI ++ + + A GP V
Sbjct: 154 KALKELNNSEFKGRKIKCSPSQVK--------HRLFIGSVPKEWTVEDMKKVVAKVGPGV 205
Query: 154 LSCKVAVD--ASGQSKGYGFVQFDNDEAAQNAINKL---NGMLINDKKVYVGLFVRHQER 208
+S ++ D +S +++G+ F+++ N A+ + K+ N L N+ + R+ E
Sbjct: 206 ISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSES 265
Query: 209 GRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFES 267
++ + VYVKNL E+ T LK+LF G IT + G K +GFV+F
Sbjct: 266 SSSS---QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFAD 322
Query: 268 PDSAAAAVE-----KLNGTTI 283
SA A++ ++NG T+
Sbjct: 323 RSSAMKALKNTEKYEINGQTL 343
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 41/288 (14%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINK 186
+ V+I + K L + G V +V V ++KGY FV F E A A+ +
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEV--AEVRVMKGKEAKGYAFVTFKTKELASKALKE 158
Query: 187 LNGMLINDKKVYVGLF-VRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV-I 244
LN +K+ V+H+ +++ ++ + T ED+K++ A G +
Sbjct: 159 LNNSEFKGRKIKCSPSQVKHR-------------LFIGSVPKEWTVEDMKKVVAKVGPGV 205
Query: 245 TSATVMKDVNGNSK--CFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRKA 298
S ++KD +S+ F F+ + + A + +K++ + ND V +A ++
Sbjct: 206 ISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSES 265
Query: 299 EREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSY 358
++++A +YVKNL +NI +LK+LF G IT +
Sbjct: 266 SSSSQVKA-----------------VYVKNLPENITQNRLKELFEHHGKITKVALPPAKA 308
Query: 359 GNSKGS-GFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKA 405
G K GFV F+ A +A+ + + L ++A+ + D+K+
Sbjct: 309 GQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKS 356
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 26/261 (9%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +Y+G + +E L + ++ +RV + + + GYA+V F + A+
Sbjct: 97 PPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAK---GYAFVTFKTKELAS 153
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
AL+ LN + G+ I+ SQ +FI ++ + + A GP V
Sbjct: 154 KALKELNNSEFKGRKIKCSPSQVK--------HRLFIGSVPKEWTVEDMKKVVAKVGPGV 205
Query: 154 LSCKVAVD--ASGQSKGYGFVQFDNDEAAQNAINKL---NGMLINDKKVYVGLFVRHQER 208
+S ++ D +S +++G+ F+++ N A+ + K+ N L N+ + R+ E
Sbjct: 206 ISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSES 265
Query: 209 GRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFES 267
++ + VYVKNL E+ T LK+LF G IT + G K +GFV+F
Sbjct: 266 SSSS---QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFAD 322
Query: 268 PDSAAAAVE-----KLNGTTI 283
SA A++ ++NG T+
Sbjct: 323 RSSAMKALKNTEKYEINGQTL 343
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 41/288 (14%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINK 186
+ V+I + K L + G V +V V ++KGY FV F E A A+ +
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEV--AEVRVMKGKEAKGYAFVTFKTKELASKALKE 158
Query: 187 LNGMLINDKKVYVGLF-VRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV-I 244
LN +K+ V+H+ +++ ++ + T ED+K++ A G +
Sbjct: 159 LNNSEFKGRKIKCSPSQVKHR-------------LFIGSVPKEWTVEDMKKVVAKVGPGV 205
Query: 245 TSATVMKDVNGNSK--CFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRKA 298
S ++KD +S+ F F+ + + A + +K++ + ND V +A ++
Sbjct: 206 ISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSES 265
Query: 299 EREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSY 358
++++A +YVKNL +NI +LK+LF G IT +
Sbjct: 266 SSSSQVKA-----------------VYVKNLPENITQNRLKELFEHHGKITKVALPPAKA 308
Query: 359 GNSKGS-GFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKA 405
G K GFV F+ A +A+ + + L ++A+ + D+K+
Sbjct: 309 GQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKS 356
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 121/261 (46%), Gaps = 26/261 (9%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +Y+G + +E L + ++ +RV + + + GYA+V F + A+
Sbjct: 97 PPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAK---GYAFVTFKTKELAS 153
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
AL+ LN + G+ I+ SQ +FI ++ + + A GP V
Sbjct: 154 KALKELNNSEFKGRKIKCSPSQVK--------HRLFIGSVPKEWTVEDMKKVVAKVGPGV 205
Query: 154 LSCKVAVD--ASGQSKGYGFVQFDNDEAAQNAINKL---NGMLINDKKVYVGLFVRHQER 208
+S ++ D +S +++G+ F+++ N A+ + K+ N L N+ + R+ E
Sbjct: 206 ISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSES 265
Query: 209 GRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFES 267
++ + VYVKNL E+ T LK+LF G IT + G K +GFV+F
Sbjct: 266 SSSS---QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFAD 322
Query: 268 PDSAAAAVE-----KLNGTTI 283
SA A++ ++NG T+
Sbjct: 323 RSSAMKALKNTEKYEINGQTL 343
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 125/288 (43%), Gaps = 41/288 (14%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINK 186
+ V+I + K L + G V +V V ++KGY FV F E A A+ +
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEV--AEVRVMKGKEAKGYAFVTFKTKELASKALKE 158
Query: 187 LNGMLINDKKVYVGLF-VRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV-I 244
LN +K+ V+H+ +++ ++ + T ED+K++ A G +
Sbjct: 159 LNNSEFKGRKIKCSPSQVKHR-------------LFIGSVPKEWTVEDMKKVVAKVGPGV 205
Query: 245 TSATVMKDVNGNSK--CFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRKA 298
S ++KD +S+ F F+ + + A + +K++ + ND V +A ++
Sbjct: 206 ISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSES 265
Query: 299 EREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSY 358
++++A +YVKNL +NI +LK+LF G IT +
Sbjct: 266 SSSSQVKA-----------------VYVKNLPENITQNRLKELFEHHGKITKVALPPAKA 308
Query: 359 GNSKGS-GFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKA 405
G K GFV F+ A +A+ + + L ++A+ + D+K+
Sbjct: 309 GQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKS 356
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/423 (24%), Positives = 167/423 (39%), Gaps = 87/423 (20%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L+V +L + E +L + FSQ + + D+ + S G AY++F+ + AA ALE
Sbjct: 331 LFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEES 390
Query: 101 NFTPVNGKPIRIM-------------------FSQRDPSIRKSGYA-------NVFIKNL 134
+ + G+ + +M QR RK+ A N
Sbjct: 391 DNSIFQGRLLHVMPAIPRHSNNEENKNQGSKTLKQRREEERKAAEAKGDTRAWNSLFMRP 450
Query: 135 DTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLIND 194
DT ++N A G S + +A G + Y + D + +NA K
Sbjct: 451 DTIVENAA-----RKHGVSKSDFLDPEADGLASRYSLAETDGIKETKNAFRKAG------ 499
Query: 195 KKVYVGLFVRHQERGRANGSPKFTNVYV-KNLSESCTDEDLKQLFAPFGVITSATVMKDV 253
V V H +G+ +G + +V + KNL T+ DL ++F FG ++ K +
Sbjct: 500 --VNVESLEEHA-KGKVDGRKRSNHVLLAKNLPYGATENDLAKMFGKFG-----SLDKII 551
Query: 254 NGNSKCFGFVNFESPDSAAAAVEKL----------------------NGTTINDDKVLYA 291
++K V F P A AA L T+IND+ +
Sbjct: 552 LPSTKTLALVIFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSDILTPKLTSINDEVNIVI 611
Query: 292 GRAQRKAEREAELRAKFEQ--ERISRY----EKLQGANLYVKNLDDNINDEKLKDLFSEF 345
G K R E+ ERIS ++++ +L+VKNL+ DE L++ FSE
Sbjct: 612 GEKDVK-------RGILEKDVERISDADIDPDRIEARSLFVKNLNFKTTDEVLREHFSEH 664
Query: 346 ---GTITSFKV---MLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQR 399
G I S KV + + S G GFV F + E A ++ G ++ L + +
Sbjct: 665 MKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHV 724
Query: 400 KED 402
K D
Sbjct: 725 KND 727
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 23/242 (9%)
Query: 183 AINKLNGMLINDKKVYVGLFVRHQER-GRANGSP---KFTNVYVKNLSESCTDEDLKQLF 238
+IN ++I +K V G+ + ER A+ P + +++VKNL+ TDE L++ F
Sbjct: 602 SINDEVNIVIGEKDVKRGILEKDVERISDADIDPDRIEARSLFVKNLNFKTTDEVLREHF 661
Query: 239 APF---GVITSATVMKDV-NGN--SKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAG 292
+ G I S V K + NG S FGFV F+S ++A + L GT + D L
Sbjct: 662 SEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCNDLQGTVL-DGHALILQ 720
Query: 293 RAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFK 352
K + + +++ K E+++ S L VKN+ ++ L+ LFS FG I S +
Sbjct: 721 LCHVKND-DDKVQKKVEKDKSS-------TKLLVKNVAFEATEKDLRQLFSPFGQIKSLR 772
Query: 353 VMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRK---EDRKARLQA 409
+ + +GN +G FV + T +EA A+T ++ + + L + A+ E+ +AR A
Sbjct: 773 LPM-KFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGESLEELRARTAA 831
Query: 410 HF 411
F
Sbjct: 832 QF 833
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 15/191 (7%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAF---GPVLSCKVAV---DASGQSKGYGFVQFDNDEAAQ 181
++F+KNL+ ++ L + F+ G +LS KV + S G+GFV+FD+ E A
Sbjct: 642 SLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETAT 701
Query: 182 NAINKLNGMLINDKKVYVGL-FVRHQE---RGRANGSPKFTNVYVKNLSESCTDEDLKQL 237
+ N L G +++ + + L V++ + + + T + VKN++ T++DL+QL
Sbjct: 702 SVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSSTKLLVKNVAFEATEKDLRQL 761
Query: 238 FAPFGVITSATV-MKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQR 296
F+PFG I S + MK GN + F FV + + A A+ L+ T + + L RA +
Sbjct: 762 FSPFGQIKSLRLPMK--FGNHRGFAFVEYVTQQEAQNALTALSSTHLY-GRHLVIERA-K 817
Query: 297 KAEREAELRAK 307
+ E ELRA+
Sbjct: 818 EGESLEELRAR 828
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 38/256 (14%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
++V + + T+++L LF F ++ ++KD S+ FV S D A AV
Sbjct: 18 LFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAV--- 74
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
++ K L + L+ K+ + R E L++ L NI++ ++
Sbjct: 75 --NACHNKKTLPGA--------SSPLQVKYADGELERLEH----KLFIGMLPKNISEVEV 120
Query: 339 KDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNG--KLVGRK-PLYVA 395
LFS++GTI +++ S SKG F+ + T E+A A+ +NG K+ G PL V
Sbjct: 121 SALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 180
Query: 396 VAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFMPPQ 455
A +++R+AR +A AQ Q A G+ + P L +G G++PP
Sbjct: 181 WADTEKERQAR-RAQKAQSQ---------ASNVGHDSQHPSL------FGAMPMGYVPPY 224
Query: 456 PAGYGFQQQMLPGMRP 471
GYG+Q G+ P
Sbjct: 225 -NGYGYQAPGSYGLMP 239
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFAN---AQDAANAL 97
L+VG + ++ E +L LF + A + + + +D+ R+S G +V + A A NA
Sbjct: 18 LFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 77
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCK 157
P P+++ ++ D + + + +FI L +I + F+ +G + +
Sbjct: 78 HNKKTLPGASSPLQVKYA--DGELERLEH-KLFIGMLPKNISEVEVSALFSKYGTIKDLQ 134
Query: 158 VAVDASGQSKGYGFVQFDNDEAAQNAINKLNG 189
+ + SKG F++++ E A A+ +NG
Sbjct: 135 ILRGSQQTSKGCAFLKYETKEQALAALEAING 166
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 117/258 (45%), Gaps = 38/258 (14%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
++V + + T+++L LF F ++ ++KD S+ FV S D A AV
Sbjct: 16 VKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAV- 74
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
++ K L + L+ K+ + R E L++ L NI++
Sbjct: 75 ----NACHNKKTLPGA--------SSPLQVKYADGELERLEH----KLFIGMLPKNISEV 118
Query: 337 KLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNG--KLVGRK-PLY 393
++ LFS++GTI +++ S SKG F+ + T E+A A+ +NG K+ G PL
Sbjct: 119 EVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 178
Query: 394 VAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFMP 453
V A +++R+AR +A AQ Q A G+ + P L +G G++P
Sbjct: 179 VKWADTEKERQAR-RAQKAQSQ---------ASNVGHDSQHPSL------FGAMPMGYVP 222
Query: 454 PQPAGYGFQQQMLPGMRP 471
P GYG+Q G+ P
Sbjct: 223 PY-NGYGYQAPGSYGLMP 239
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
AN+FI ++ ++ L + F FG VLS KV VD A+G SK +GFV +D+ EAAQ+AI+
Sbjct: 348 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 407
Query: 186 KLNGMLINDKKVYV 199
+NG + KK+ V
Sbjct: 408 MMNGCQLGGKKLKV 421
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 215 PKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAA 273
P N+++ ++ + D++L F PFG + SA V D G SKCFGFV+++SP++A +
Sbjct: 345 PPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQS 404
Query: 274 AVEKLNGTTINDDKV 288
A+ +NG + K+
Sbjct: 405 AISMMNGCQLGGKKL 419
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAM 379
GANL++ ++ D++L + F FG + S KV +D + G SK GFV++ +PE A A+
Sbjct: 347 GANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 406
Query: 380 TEMNGKLVGRKPLYVAVAQRKEDRK 404
+ MNG +G K L V Q K D K
Sbjct: 407 SMMNGCQLGGKKLKV---QHKRDNK 428
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFAN---AQDAANAL 97
L+VG + ++ E +L LF + A + + + +D+ R+S G +V + A A NA
Sbjct: 18 LFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 77
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCK 157
P P+++ ++ D + + + +FI L +I + F+ +G + +
Sbjct: 78 HNKKTLPGASSPLQVKYA--DGELERLEH-KLFIGMLPKNISEVEVSALFSKYGTIKDLQ 134
Query: 158 VAVDASGQSKGYGFVQFDNDEAAQNAINKLNG 189
+ + SKG F++++ E A A+ +NG
Sbjct: 135 ILRGSQQTSKGCAFLKYETKEQALAALEAING 166
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 12/175 (6%)
Query: 215 PKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGN-SKCFGFVNFESPDSAAA 273
P+ ++V N E L LF G + A V+ + + S+ FGFV + + A +
Sbjct: 106 PEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAES 165
Query: 274 AVEKLNGTTINDDKVLYAGRAQRKAER-EAELRAKFEQERISRYEKLQGANLYVKNLDDN 332
AVEK NG N + L +A K R E RA E + R +YV NL
Sbjct: 166 AVEKFNGYDYNG-RSLVVNKASPKGSRPERTERAPRTFEPVLR--------IYVANLAWE 216
Query: 333 INDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKL 386
+++ +L+ +FSE G I S +V+ D G S+G GFV S E N A+ ++G++
Sbjct: 217 VDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQV 271
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P +A L+VG+ +V+ +L LF Q + V ++ S G+ +V + ++A
Sbjct: 105 PPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAE 164
Query: 95 NALELLNFTPVNGKPI----------RIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALH 144
+A+E N NG+ + R ++R P + +++ NL +DN L
Sbjct: 165 SAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEP-VLRIYVANLAWEVDNSRLE 223
Query: 145 DTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGML 191
F+ G ++S +V D +G+S+G+GFV ++ +AI L+G +
Sbjct: 224 QVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQV 271
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 9/162 (5%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
A +F+ N +D++ L F G V +V + + S+G+GFV E A++A+
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 186 KLNGMLINDKKVYV------GLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFA 239
K NG N + + V G ER P +YV NL+ + L+Q+F+
Sbjct: 169 KFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVL-RIYVANLAWEVDNSRLEQVFS 227
Query: 240 PFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNG 280
G I SA V+ D G S+ FGFV A+ L+G
Sbjct: 228 EHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 14/172 (8%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
LYVG++ V+ +L + + + V D+ + S +A+V +DA A E L
Sbjct: 62 LYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKL 121
Query: 101 NFTPVNGKPIRIMFSQR------------DPSIRKSGYANVFIKNLDTSIDNKALHDTFA 148
N T + G+ I++ +++ + + S Y V++ NL ++ + +L F+
Sbjct: 122 NGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPY-KVYVGNLAKNVTSDSLKKFFS 180
Query: 149 AFGPVLSCKVA-VDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
G LS KV+ + +S G+GFV F +DE + AI+ N L+ +K+ V
Sbjct: 181 EKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRV 232
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 202 FVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCF 260
FV E+ + SP +YV N+ + ++++L+++ G + A VM D + S+ F
Sbjct: 45 FVVSSEQATVD-SPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRF 103
Query: 261 GFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQ 320
FV ++ + A AA EKLNGT I ++ + ++A S Y+
Sbjct: 104 AFVTMKTVEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYK--- 160
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGS--GFVAFSTPEEANQA 378
+YV NL N+ + LK FSE G S KV + G SK S GFV FS+ E+ A
Sbjct: 161 ---VYVGNLAKNVTSDSLKKFFSEKGNALSAKVS-RAPGTSKSSGFGFVTFSSDEDVEAA 216
Query: 379 MTEMNGKLV 387
++ N L+
Sbjct: 217 ISSFNNALL 225
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 22/183 (12%)
Query: 119 PSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDND 177
P++RK +++ N+ ++ N L G V +V D S +S+ + FV
Sbjct: 57 PALRK-----LYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTV 111
Query: 178 EAAQNAINKLNGMLINDKKVYV----------GLFVRHQERGRANGSPKFTNVYVKNLSE 227
E A A KLNG I +++ V GL V+ E + K VYV NL++
Sbjct: 112 EDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYK---VYVGNLAK 168
Query: 228 SCTDEDLKQLFAPFGVITSATVMKDVNGNSKC--FGFVNFESPDSAAAAVEKLNGTTIND 285
+ T + LK+ F+ G SA V + G SK FGFV F S + AA+ N +
Sbjct: 169 NVTSDSLKKFFSEKGNALSAKVSR-APGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEG 227
Query: 286 DKV 288
K+
Sbjct: 228 QKI 230
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 25/187 (13%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
N L+VG+L +V+ AQL ++F + + V D++ S G+ +V ++A + A
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 98 ELLNFTPVNGKPIRI-------------MFSQ---------RDPSIRKS--GYANVFIKN 133
+ LN V+G+ +R+ F + R P S G V + N
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGN 202
Query: 134 LDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLI 192
L +DN AL F G VL KV D SG+S+G+GFV F + + +AI L+G +
Sbjct: 203 LAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADL 262
Query: 193 NDKKVYV 199
N + + V
Sbjct: 263 NGRAIRV 269
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDAS-GQSKGYGFVQFDNDEAAQNAINKL 187
+F+ NL S+D+ L + F G V +V D S G+S+G+GFV + + A +L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 188 NGMLINDKKVYVGL------------------FVRHQERG--RANGSPKFTNVYVKNLSE 227
NG +++ +++ V F + RG R S V+V NL+
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 228 SCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEKLNGTTINDD 286
+ L+ LF G + A V+ D +G S+ FGFV F S D +A+ L+G +N
Sbjct: 206 GVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLN-- 263
Query: 287 KVLYAGRAQRKAEREAELRAKF 308
GRA R + ++ + +F
Sbjct: 264 -----GRAIRVSPADSRPKRQF 280
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
++V NL S L ++F G + V+ D G S+ FGFV S AA ++L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELR----AKFEQERIS---RYEKLQGAN-LYVKNLD 330
NG + D + L R R +F +R R G N ++V NL
Sbjct: 146 NGYVV-DGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 331 DNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGR 389
+++ L+ LF E G + KV+ D G S+G GFV FS+ +E + A+ ++G +
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 390 KPLYVAVAQRKEDRK 404
+ + V+ A + R+
Sbjct: 265 RAIRVSPADSRPKRQ 279
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 25/187 (13%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
N L+VG+L +V+ AQL ++F + + V D++ S G+ +V ++A + A
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 98 ELLNFTPVNGKPIRI-------------MFSQ---------RDPSIRKS--GYANVFIKN 133
+ LN V+G+ +R+ F + R P S G V + N
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGN 202
Query: 134 LDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLI 192
L +DN AL F G VL KV D SG+S+G+GFV F + + +AI L+G +
Sbjct: 203 LAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADL 262
Query: 193 NDKKVYV 199
N + + V
Sbjct: 263 NGRAIRV 269
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 29/202 (14%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDAS-GQSKGYGFVQFDNDEAAQNAINKL 187
+F+ NL S+D+ L + F G V +V D S G+S+G+GFV + + A +L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 188 NGMLINDKKVYVGL------------------FVRHQERG--RANGSPKFTNVYVKNLSE 227
NG +++ +++ V F + RG R S V+V NL+
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 228 SCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEKLNGTTINDD 286
+ L+ LF G + A V+ D +G S+ FGFV F S D +A+ L+G +N
Sbjct: 206 GVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLN-- 263
Query: 287 KVLYAGRAQRKAEREAELRAKF 308
GRA R + ++ + +F
Sbjct: 264 -----GRAIRVSPADSRPKRQF 280
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
++V NL S L ++F G + V+ D G S+ FGFV S AA ++L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELR----AKFEQERIS---RYEKLQGAN-LYVKNLD 330
NG + D + L R R +F +R R G N ++V NL
Sbjct: 146 NGYVV-DGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 331 DNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGR 389
+++ L+ LF E G + KV+ D G S+G GFV FS+ +E + A+ ++G +
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 390 KPLYVAVAQRKEDRK 404
+ + V+ A + R+
Sbjct: 265 RAIRVSPADSRPKRQ 279
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGN-SKCFGFVNFESPDSAAAAVEKL 278
++V NL E L QLF G + A V+ + + + S+ FGFV + + AV K
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKF 183
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+G + D ++L +A + + Q R G YV NL ++++ L
Sbjct: 184 SGFEL-DGRLLTVNKAAPRGT------PRLRQPRTFN----SGLRAYVGNLPWDVDNSSL 232
Query: 339 KDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVA 397
+ LFSE G + S +V+ D G S+G GFV S E N A+ ++G+ + + V VA
Sbjct: 233 EQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVA 292
Query: 398 QRKEDR 403
+ + R
Sbjct: 293 EERPRR 298
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + ++VG+L +V+ +L LF Q + V ++ S G+ +V + +++
Sbjct: 118 PSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVE 177
Query: 95 NALELLNFTPVNGKPIRIMFSQ-------RDPSIRKSGYANVFIKNLDTSIDNKALHDTF 147
A+ + ++G+ + + + R P SG ++ NL +DN +L F
Sbjct: 178 RAVNKFSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGL-RAYVGNLPWDVDNSSLEQLF 236
Query: 148 AAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGL 201
+ G V S +V D +G+S+G+GFV N+ +AI L+G N + + V +
Sbjct: 237 SEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNV 291
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
N+ V NL S + D+K LF G + ++K +G K + FV +S + A AAV+K
Sbjct: 97 NLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
N T I+ ++L A+ + A +E +RY +Y NL L
Sbjct: 157 NATEIS-GRILRVEFAKGFKKPRPPPPAPTPKE--ARY------VIYASNLAWKARSTHL 207
Query: 339 KDLFSE-FGTITSFKVMLDS-YGNSKGSGFVAFSTPEEANQAMTEMNGK-LVGRKPLYVA 395
+D+F+E F T S +V+ G S G GFV++ T EEA A++ + GK L+GR PL V
Sbjct: 208 RDIFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGR-PLLVK 266
Query: 396 VAQRK 400
+++RK
Sbjct: 267 ISERK 271
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 6/162 (3%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKL 187
N+ + NL S+ + D F G V+ ++ G+ KGY FV D+ E AQ A++K
Sbjct: 97 NLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 188 NGMLINDKKVYV----GLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAP-FG 242
N I+ + + V G +Y NL+ L+ +F F
Sbjct: 157 NATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFK 216
Query: 243 VITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEKLNGTTI 283
SA V+ V G S +GFV++ + + A AA+ L G +
Sbjct: 217 TPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKEL 258
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 117/259 (45%), Gaps = 39/259 (15%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
++V + + T+++L LF F ++ ++KD S+ FV S D A AV
Sbjct: 16 VKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAV- 74
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
++ K L + L+ K+ + R E L++ L NI++
Sbjct: 75 ----NACHNKKTLPGA--------SSPLQVKYADGELERLEH----KLFIGMLPKNISEV 118
Query: 337 KLKDLFSEFGTITSFKVMLDSYGNSK-GSGFVAFSTPEEANQAMTEMNG--KLVGRK-PL 392
++ LFS++GTI +++ S SK G F+ + T E+A A+ +NG K+ G PL
Sbjct: 119 EVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 178
Query: 393 YVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGFM 452
V A +++R+AR +A AQ Q A G+ + P L +G G++
Sbjct: 179 VVKWADTEKERQAR-RAQKAQSQ---------ASNVGHDSQHPSL------FGAMPMGYV 222
Query: 453 PPQPAGYGFQQQMLPGMRP 471
PP GYG+Q G+ P
Sbjct: 223 PPY-NGYGYQAPGSYGLMP 240
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
AN+FI ++ ++ L + F FG VLS KV VD A+G SK +GFV +D+ EAAQ+AI+
Sbjct: 349 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 408
Query: 186 KLNGMLINDKKVYV 199
+NG + KK+ V
Sbjct: 409 MMNGCQLGGKKLKV 422
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 215 PKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAA 273
P N+++ ++ + D++L F PFG + SA V D G SKCFGFV+++SP++A +
Sbjct: 346 PPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQS 405
Query: 274 AVEKLNGTTINDDKV 288
A+ +NG + K+
Sbjct: 406 AISMMNGCQLGGKKL 420
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAM 379
GANL++ ++ D++L + F FG + S KV +D + G SK GFV++ +PE A A+
Sbjct: 348 GANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 407
Query: 380 TEMNGKLVGRKPLYVAVAQRKEDRK 404
+ MNG +G K L V Q K D K
Sbjct: 408 SMMNGCQLGGKKLKV---QHKRDNK 429
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+++ +S ++ L+Q F FG + A +MKD G ++ FGFV F P A V +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+ + D + + A +A + ++ R+ ++ ++V L + +
Sbjct: 66 H---VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 339 KDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAM----TEMNGKLV 387
K+ F +FGTIT VM D + +G GF+ + + E + + E+NGK+V
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAI--- 184
+FI + + L F FG V+ + D +G+++G+GFV F + A+ +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 185 NKLNGMLINDKKVY----VGLFVRHQERGRANGSPKFT-----NVYVKNLSESCTDEDLK 235
+ ++G + KK +F R ++GSP T ++V L+ + T+ D K
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSS--SHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 236 QLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
F FG IT VM D N + FGF+ ++S ++ + K LNG +
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L++G + + NE +L F +V + +D+T + G+ +V FA+ A ++
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV--VM 63
Query: 101 NFTPVNGKPIRI----------MFSQRDPSIRKS------GYANVFIKNLDTSIDNKALH 144
++G+ + +F++ + S S +F+ L +++
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 145 DTFAAFGPVLSCKVAVDASGQS-KGYGFVQFDNDEAAQNAINK----LNGMLINDKKV 197
+ F FG + V D + Q +G+GF+ +D++EA + ++K LNG ++ K+
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+++ +S ++ L+Q F FG + A +MKD G ++ FGFV F P A V +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+ + D + + A +A + ++ R+ ++ ++V L + +
Sbjct: 66 H---VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 339 KDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAM----TEMNGKLV 387
K+ F +FGTIT VM D + +G GF+ + + E + + E+NGK+V
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAI--- 184
+FI + + L F FG V+ + D +G+++G+GFV F + A+ +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 185 NKLNGMLINDKKVY----VGLFVRHQERGRANGSPKFT-----NVYVKNLSESCTDEDLK 235
+ ++G + KK +F R ++GSP T ++V L+ + T+ D K
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSS--SHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 236 QLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
F FG IT VM D N + FGF+ ++S ++ + K LNG +
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L++G + + NE +L F +V + +D+T + G+ +V FA+ A ++
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV--VM 63
Query: 101 NFTPVNGKPIRI----------MFSQRDPSIRKS------GYANVFIKNLDTSIDNKALH 144
++G+ + +F++ + S S +F+ L +++
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 145 DTFAAFGPVLSCKVAVDASGQS-KGYGFVQFDNDEAAQNAINK----LNGMLINDKKV 197
+ F FG + V D + Q +G+GF+ +D++EA + ++K LNG ++ K+
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+++ +S ++ L+Q F FG + A +MKD G ++ FGFV F P A V +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+ + D + + A +A + ++ R+ ++ ++V L + +
Sbjct: 66 H---VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 339 KDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAM----TEMNGKLV 387
K+ F +FGTIT VM D + +G GF+ + + E + + E+NGK+V
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAI--- 184
+FI + + L F FG V+ + D +G+++G+GFV F + A+ +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 185 NKLNGMLINDKKVY----VGLFVRHQERGRANGSPKFT-----NVYVKNLSESCTDEDLK 235
+ ++G + KK +F R ++GSP T ++V L+ + T+ D K
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSS--SHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 236 QLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
F FG IT VM D N + FGF+ ++S ++ + K LNG +
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L++G + + NE +L F +V + +D+T + G+ +V FA+ A ++
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV--VM 63
Query: 101 NFTPVNGKPIRI----------MFSQRDPSIRKS------GYANVFIKNLDTSIDNKALH 144
++G+ + +F++ + S S +F+ L +++
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 145 DTFAAFGPVLSCKVAVDASGQS-KGYGFVQFDNDEAAQNAINK----LNGMLINDKKV 197
+ F FG + V D + Q +G+GF+ +D++EA + ++K LNG ++ K+
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRA 181
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 119/270 (44%), Gaps = 19/270 (7%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
++VG L+ + E L +FS++ + +R+ + + + G+A++ F N + A A+ L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG--PVLSCKV 158
+NGK + SQ ++ ++ N+ + +AL + +G V +
Sbjct: 276 KNPVINGKQCGVTPSQDSDTL--------YLGNICKTWTKEALKEKLKHYGVTNVEDITL 327
Query: 159 AVDAS--GQSKGYGFVQFDNDEAAQNAINKLNGMLIN---DKKVYVGLFVRHQERGRANG 213
D++ G ++G+ F++F + A +A +L + DK V + G
Sbjct: 328 VEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIM 387
Query: 214 SPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAA 272
S + V++ L S ++ ++ L +G + + +++ K +GFV F S D+A
Sbjct: 388 S-QVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAI 446
Query: 273 AAVEKLNGTTI--NDDKVLYAGRAQRKAER 300
+ + GT + D K R R +R
Sbjct: 447 RCADSITGTELGEGDKKAKVRARLSRPLQR 476
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 119/270 (44%), Gaps = 19/270 (7%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
++VG L+ + E L +FS++ + +R+ + + + G+A++ F N + A A+ L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG--PVLSCKV 158
+NGK + SQ ++ ++ N+ + +AL + +G V +
Sbjct: 276 KNPVINGKQCGVTPSQDSDTL--------YLGNICKTWTKEALKEKLKHYGVTNVEDITL 327
Query: 159 AVDAS--GQSKGYGFVQFDNDEAAQNAINKLNGMLIN---DKKVYVGLFVRHQERGRANG 213
D++ G ++G+ F++F + A +A +L + DK V + G
Sbjct: 328 VEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIM 387
Query: 214 SPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAA 272
S + V++ L S ++ ++ L +G + + +++ K +GFV F S D+A
Sbjct: 388 S-QVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAI 446
Query: 273 AAVEKLNGTTI--NDDKVLYAGRAQRKAER 300
+ + GT + D K R R +R
Sbjct: 447 RCADSITGTELGEGDKKAKVRARLSRPLQR 476
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 119/270 (44%), Gaps = 19/270 (7%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
++VG L+ + E L +FS++ + +R+ + + + G+A++ F N + A A+ L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG--PVLSCKV 158
+NGK + SQ ++ ++ N+ + +AL + +G V +
Sbjct: 277 KNPVINGKQCGVTPSQDSDTL--------YLGNICKTWTKEALKEKLKHYGVTNVEDITL 328
Query: 159 AVDAS--GQSKGYGFVQFDNDEAAQNAINKLNGMLIN---DKKVYVGLFVRHQERGRANG 213
D++ G ++G+ F++F + A +A +L + DK V + G
Sbjct: 329 VEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIM 388
Query: 214 SPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAA 272
S + V++ L S ++ ++ L +G + + +++ K +GFV F S D+A
Sbjct: 389 S-QVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAI 447
Query: 273 AAVEKLNGTTI--NDDKVLYAGRAQRKAER 300
+ + GT + D K R R +R
Sbjct: 448 RCADSITGTELGEGDKKAKVRARLSRPLQR 477
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 119/270 (44%), Gaps = 19/270 (7%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
++VG L+ + E L +FS++ + +R+ + + + G+A++ F N + A A+ L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG--PVLSCKV 158
+NGK + SQ ++ ++ N+ + +AL + +G V +
Sbjct: 277 KNPVINGKQCGVTPSQDSDTL--------YLGNICKTWTKEALKEKLKHYGVTNVEDITL 328
Query: 159 AVDAS--GQSKGYGFVQFDNDEAAQNAINKLNGMLIN---DKKVYVGLFVRHQERGRANG 213
D++ G ++G+ F++F + A +A +L + DK V + G
Sbjct: 329 VEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIM 388
Query: 214 SPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAA 272
S + V++ L S ++ ++ L +G + + +++ K +GFV F S D+A
Sbjct: 389 S-QVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAI 447
Query: 273 AAVEKLNGTTI--NDDKVLYAGRAQRKAER 300
+ + GT + D K R R +R
Sbjct: 448 RCADSITGTELGEGDKKAKVRARLSRPLQR 477
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 118/290 (40%), Gaps = 61/290 (21%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+++ +S +E LK+ FA +G + A +M+D G ++ FGFV F P A E+
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDP----AVAER- 62
Query: 279 NGTTINDDKVLYAGR---AQRKAEREAELRAKFEQERISRYE-KLQGA-------NLYVK 327
+ DK + GR A++ R+ +Q+ I+R +QG+ ++V
Sbjct: 63 ----VIIDKHIIDGRTVEAKKAVPRD-------DQQNINRQTGSVQGSPGPGRTKKIFVG 111
Query: 328 NLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNS---KGSGFVAFSTPEEANQAMT---- 380
L I + K F +FGTIT VM D N+ +G GF+ + + E ++ +
Sbjct: 112 GLPSTITESDFKMYFDQFGTITDVVVMYDH--NTQRPRGFGFITYDSEEAVDRVLYKTFH 169
Query: 381 EMNGKLV--------------GRKPLYVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAG 426
E+NGK+V R PL R + ++ Q G + P G
Sbjct: 170 ELNGKMVEVKRAVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQ-----GYSMSPIG 224
Query: 427 IPGYHAGTPRLAPQQLYYGQGSPGFMPPQPAGYGFQQQMLPGMRPGVAPN 476
G R +P G GF P GYG + G+ P N
Sbjct: 225 GFGVRM-DGRFSPLT----GGRTGFTPFGNTGYGMGMNLESGLSPNFGGN 269
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+FI + D + L + FA +G V+ + D A+G+++G+GFV F + A+ I +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI--I 65
Query: 188 NGMLINDKKVYVGLFVR-------HQERGRANGSP---KFTNVYVKNLSESCTDEDLKQL 237
+ +I+ + V V +++ G GSP + ++V L + T+ D K
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 238 FAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
F FG IT VM D N + FGF+ ++S ++ + K LNG +
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMV 176
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 118/290 (40%), Gaps = 61/290 (21%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+++ +S +E LK+ FA +G + A +M+D G ++ FGFV F P A E+
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDP----AVAER- 62
Query: 279 NGTTINDDKVLYAGR---AQRKAEREAELRAKFEQERISRYE-KLQGA-------NLYVK 327
+ DK + GR A++ R+ +Q+ I+R +QG+ ++V
Sbjct: 63 ----VIIDKHIIDGRTVEAKKAVPRD-------DQQNINRQTGSVQGSPGPGRTKKIFVG 111
Query: 328 NLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNS---KGSGFVAFSTPEEANQAMT---- 380
L I + K F +FGTIT VM D N+ +G GF+ + + E ++ +
Sbjct: 112 GLPSTITESDFKMYFDQFGTITDVVVMYDH--NTQRPRGFGFITYDSEEAVDRVLYKTFH 169
Query: 381 EMNGKLV--------------GRKPLYVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAG 426
E+NGK+V R PL R + ++ Q G + P G
Sbjct: 170 ELNGKMVEVKRAVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQ-----GYSMSPIG 224
Query: 427 IPGYHAGTPRLAPQQLYYGQGSPGFMPPQPAGYGFQQQMLPGMRPGVAPN 476
G R +P G GF P GYG + G+ P N
Sbjct: 225 GFGVRM-DGRFSPLT----GGRTGFTPFGNTGYGMGMNLESGLSPNFGGN 269
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+FI + D + L + FA +G V+ + D A+G+++G+GFV F + A+ I +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI--I 65
Query: 188 NGMLINDKKVYVGLFVR-------HQERGRANGSP---KFTNVYVKNLSESCTDEDLKQL 237
+ +I+ + V V +++ G GSP + ++V L + T+ D K
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 238 FAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
F FG IT VM D N + FGF+ ++S ++ + K LNG +
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMV 176
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 33 GGPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQD 92
GG FA L+VG + E + LF + +V + + +D+ G ++ +A +++
Sbjct: 84 GGNFAK--LFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEE 141
Query: 93 AANALELLN---FTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAA 149
A A+ L+ P PI++ ++ + + +F+ +L+ K + + F+
Sbjct: 142 ADQAIRALHNRHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSK 201
Query: 150 FGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGM 190
+G + + D QS+G GFV++ + + A AIN LNG+
Sbjct: 202 YGRIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGI 242
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 121/298 (40%), Gaps = 15/298 (5%)
Query: 104 PVNGKPIRIMFSQRDPSIRKS---GYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAV 160
P++G+ FS R S S +A +F+ ++ + + + F G V+ +
Sbjct: 62 PLSGQKRGFPFSGRGASPDHSDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIK 121
Query: 161 D-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTN 219
D +GQ +G F+++ E A AI L+ V + VR+ + R
Sbjct: 122 DRKTGQHQGCCFIKYATSEEADQAIRALHNRHTLPGGVGP-IQVRYADGERERLGAVEYK 180
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
++V +L++ + ++++++F+ +G I +M+D S+ GFV + D A AA+ LN
Sbjct: 181 LFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALN 240
Query: 280 G--TTINDDKVLYAGRAQRKAEREAELRAK-FEQERISRYEKLQGANLYVKNLD---DNI 333
G T ++ L A K R+ + R F G L N D D+I
Sbjct: 241 GIYTMRGCEQPLIVRFADPKRPRQGDSRGPAFGSAGFGPRLDSPGTRLPSNNSDPMGDHI 300
Query: 334 NDEKLKDLFSEFGTITSFKVMLDSYGNS--KGSGFVAFSTPEEANQAMTEMNGKLVGR 389
+ T TSF G SG +A P A MT M + GR
Sbjct: 301 PPPNAWRPIPQPNTGTSFNAGFHGMGPPLIPRSGDMAL--PINAGGPMTGMGVSIDGR 356
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 124/297 (41%), Gaps = 78/297 (26%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+++ +S +E L++ F+ +G + A +MKD G ++ FGFV F P A V++
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYE-KLQGA-------NLYVKNLD 330
+ D +++ A++ R+ +Q +SR + G+ ++V L
Sbjct: 68 HNI---DGRMV---EAKKAVPRD-------DQNVLSRTSGSIHGSPGPGRTRKIFVGGLA 114
Query: 331 DNINDEKLKDLFSEFGTITSFKVMLDSYGNS---KGSGFVAFSTPEEANQAMT----EMN 383
+ + K F +FGTIT VM D N+ +G GF+ + + E +Q + E+N
Sbjct: 115 STVTESDFKKYFDQFGTITDVVVMYDH--NTQRPRGFGFITYDSEEAVDQVLLKTFHELN 172
Query: 384 GKLVGRKPLYVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIP--GYHAGTPRLAP-- 439
GK+V E ++A VP ++P PA P GY+ G R+
Sbjct: 173 GKMV-------------EVKRA----------VPKELSPGPARSPLSGYNYGLSRVNSFL 209
Query: 440 ---QQLY-------YGQGSPG-FMP---------PQPAGYGFQQQMLPGMRPGVAPN 476
Q Y YG G F P P +GYG PG+ PG N
Sbjct: 210 NGFNQSYSPSTVGGYGLRVDGRFSPVAGGRNAYAPFGSGYGMGMNFEPGLSPGFGGN 266
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAI--- 184
+FI + + + L + F+ +G V + D +G+++G+GFV F + A +
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67
Query: 185 NKLNGMLINDKKVYV--GLFVRHQERGRANGSP---KFTNVYVKNLSESCTDEDLKQLFA 239
+ ++G ++ KK V + G +GSP + ++V L+ + T+ D K+ F
Sbjct: 68 HNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
Query: 240 PFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
FG IT VM D N + FGF+ ++S ++ + K LNG +
Sbjct: 128 QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMV 176
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 123/295 (41%), Gaps = 74/295 (25%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+++ +S +E L++ F+ +G + A +MKD G ++ FGFV F P A V++
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYE-KLQGA-------NLYVKNLD 330
+ D +++ A++ R+ +Q +SR + G+ ++V L
Sbjct: 68 HNI---DGRMV---EAKKAVPRD-------DQNVLSRTSGSIHGSPGPGRTRKIFVGGLA 114
Query: 331 DNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMT----EMNGK 385
+ + K F +FGTIT VM D + +G GF+ + + E +Q + E+NGK
Sbjct: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGK 174
Query: 386 LVGRKPLYVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIP--GYHAGTPRLAP---- 439
+V E ++A VP ++P PA P GY+ G R+
Sbjct: 175 MV-------------EVKRA----------VPKELSPGPARSPLSGYNYGLSRVNSFLNG 211
Query: 440 -QQLY-------YGQGSPG-FMP---------PQPAGYGFQQQMLPGMRPGVAPN 476
Q Y YG G F P P +GYG PG+ PG N
Sbjct: 212 FNQSYSPSTVGGYGLRVDGRFSPVAGGRNAYAPFGSGYGMGMNFEPGLSPGFGGN 266
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAI--- 184
+FI + + + L + F+ +G V + D +G+++G+GFV F + A +
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67
Query: 185 NKLNGMLINDKKVYV--GLFVRHQERGRANGSP---KFTNVYVKNLSESCTDEDLKQLFA 239
+ ++G ++ KK V + G +GSP + ++V L+ + T+ D K+ F
Sbjct: 68 HNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
Query: 240 PFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
FG IT VM D N + FGF+ ++S ++ + K LNG +
Sbjct: 128 QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMV 176
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 111/256 (43%), Gaps = 22/256 (8%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
++VG L+ + E L +F ++ +++ +R+ ++ + + GYA V FAN + A AL +
Sbjct: 420 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 479
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG----PVLSC 156
+ GK S+ + ++ F+ N+ + +A+ +G ++
Sbjct: 480 KNPVIRGKRCGTSPSEDNDTL--------FLGNICNTWTKEAVKQKLKDYGVEGVENITL 531
Query: 157 KVAVDASGQSKGYGFVQFDNDEAAQNAINKLN------GMLINDKKVYVGLFVRHQERGR 210
V G S+G+ F++F A A +L G KV +R +
Sbjct: 532 VPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPD--- 588
Query: 211 ANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPD 269
+ +V++ L ++ +++ +G I + + ++ K GFV+F + +
Sbjct: 589 PEIMAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHE 648
Query: 270 SAAAAVEKLNGTTIND 285
+A A V+ +N + + D
Sbjct: 649 AALACVDGVNKSELGD 664
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 48/313 (15%)
Query: 121 IRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDAS-GQSKGYGFVQFDNDEA 179
IRK +F+ LD + L F G VL ++ ++S +++GY V+F N E
Sbjct: 414 IRKE--HEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEH 471
Query: 180 AQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTN--VYVKNLSESCTDEDLKQL 237
A+ A++++ +I K R SP N +++ N+ + T E +KQ
Sbjct: 472 AKKALSEMKNPVIRGK--------------RCGTSPSEDNDTLFLGNICNTWTKEAVKQK 517
Query: 238 FAPFGV--ITSATVMKDV--NGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGR 293
+GV + + T++ DV G S+ F F+ F A A ++L + G
Sbjct: 518 LKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGV------IFGH 571
Query: 294 AQRKAERE-AELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFK 352
A+R A+ AE + + E ++ Q ++++ L + +++ +++ +G I K
Sbjct: 572 AERTAKVAFAEPIREPDPEIMA-----QVKSVFINGLPLHWDEDHVREHLKSYGEIV--K 624
Query: 353 VMLD---SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQA 409
++L S K GFV FST E A + +N +G + + +ARL
Sbjct: 625 IVLARKMSTSKRKDHGFVDFSTHEAALACVDGVNKSELGDGTSKIKL-------RARLSN 677
Query: 410 HFAQIQ-VPGGMA 421
+ Q V GGM
Sbjct: 678 PLPKTQAVKGGMC 690
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
LY G+L +V+ A L L + I V D+ S G+A+V + +D ++ L
Sbjct: 115 LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNL 174
Query: 101 NFTPVNGKPIRIMFSQ----RDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSC 156
+ G+ +R+ FS ++P ++ Y +F+ NL ++ +++L F G V+
Sbjct: 175 DGKEFMGRTLRVNFSDKPKPKEPLYPETEY-KLFVGNLAWTVTSESLTQAFQEHGTVVGA 233
Query: 157 KVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGL 201
+V D +G+S+GYGFV + A+ ++ + + + + V L
Sbjct: 234 RVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSL 279
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 24/189 (12%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVE 276
T +Y NL S L L +G V+ D + G S+ F FV + A ++
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ 172
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQE---RISRYEKLQGANLYVKNLDDNI 333
L+G + GR LR F + + Y + + L+V NL +
Sbjct: 173 NLDGKE-------FMGRT---------LRVNFSDKPKPKEPLYPETE-YKLFVGNLAWTV 215
Query: 334 NDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEM-NGKLVGRKP 391
E L F E GT+ +V+ D G S+G GFV+++T E + A+ M N +L GR
Sbjct: 216 TSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGR-T 274
Query: 392 LYVAVAQRK 400
L V++AQ K
Sbjct: 275 LRVSLAQGK 283
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 111/256 (43%), Gaps = 22/256 (8%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
++VG L+ + E L +F ++ +++ +R+ ++ + + GYA V FAN + A AL +
Sbjct: 420 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 479
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG----PVLSC 156
+ GK S+ + ++ F+ N+ + +A+ +G ++
Sbjct: 480 KNPVIRGKRCGTSPSEDNDTL--------FLGNICNTWTKEAVKQKLKDYGVEGVENITL 531
Query: 157 KVAVDASGQSKGYGFVQFDNDEAAQNAINKLN------GMLINDKKVYVGLFVRHQERGR 210
V G S+G+ F++F A A +L G KV +R +
Sbjct: 532 VPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPD--- 588
Query: 211 ANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPD 269
+ +V++ L ++ +++ +G I + + ++ K GFV+F + +
Sbjct: 589 PEIMAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHE 648
Query: 270 SAAAAVEKLNGTTIND 285
+A A V+ +N + + D
Sbjct: 649 AALACVDGVNKSELGD 664
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 48/313 (15%)
Query: 121 IRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDAS-GQSKGYGFVQFDNDEA 179
IRK +F+ LD + L F G VL ++ ++S +++GY V+F N E
Sbjct: 414 IRKE--HEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEH 471
Query: 180 AQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTN--VYVKNLSESCTDEDLKQL 237
A+ A++++ +I K R SP N +++ N+ + T E +KQ
Sbjct: 472 AKKALSEMKNPVIRGK--------------RCGTSPSEDNDTLFLGNICNTWTKEAVKQK 517
Query: 238 FAPFGV--ITSATVMKDV--NGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGR 293
+GV + + T++ DV G S+ F F+ F A A ++L + G
Sbjct: 518 LKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGV------IFGH 571
Query: 294 AQRKAERE-AELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFK 352
A+R A+ AE + + E ++ Q ++++ L + +++ +++ +G I K
Sbjct: 572 AERTAKVAFAEPIREPDPEIMA-----QVKSVFINGLPLHWDEDHVREHLKSYGEIV--K 624
Query: 353 VMLD---SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQA 409
++L S K GFV FST E A + +N +G + + +ARL
Sbjct: 625 IVLARKMSTSKRKDHGFVDFSTHEAALACVDGVNKSELGDGTSKIKL-------RARLSN 677
Query: 410 HFAQIQ-VPGGMA 421
+ Q V GGM
Sbjct: 678 PLPKTQAVKGGMC 690
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAF---GPVLSCKVAVDASGQ---SKGYGFVQFDNDEAAQ 181
++F+KNL+ ++ L + F+ G +LS KV S G+GFV+FD+ E A
Sbjct: 501 SLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNVSMGFGFVEFDSAETAT 560
Query: 182 NAINKLNGMLIND-----KKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQ 236
+ N L G +++ + +V + Q++ + S T + V+N++ T +DL+Q
Sbjct: 561 SVCNDLQGAVLDSYAHILQPCHVKNVGKVQKKVEKDKSS--TKLLVRNVAFEATKKDLRQ 618
Query: 237 LFAPFGVITSATV-MKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQ 295
LF+PFG I + MK GN + F FV + + A A+ L+ T + + L RA
Sbjct: 619 LFSPFGQIKKLKLPMK--FGNHRGFAFVEYVTQQEAQNALTALSSTHLY-GRHLVIERA- 674
Query: 296 RKAEREAELRAK 307
++ E ELRA+
Sbjct: 675 KEGESLKELRAR 686
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 34/209 (16%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPF---GVITSATVMKDVNGN---SKCFGFVNFESPDSAA 272
+++VKNL+ TDE L++ F+ G I S V K + S FGFV F+S ++A
Sbjct: 501 SLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNVSMGFGFVEFDSAETAT 560
Query: 273 AAVEKLNGTTIND-------DKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLY 325
+ L G ++ V G+ Q+K E++ L
Sbjct: 561 SVCNDLQGAVLDSYAHILQPCHVKNVGKVQKKVEKDK-----------------SSTKLL 603
Query: 326 VKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGK 385
V+N+ + L+ LFS FG I K+ + +GN +G FV + T +EA A+T ++
Sbjct: 604 VRNVAFEATKKDLRQLFSPFGQIKKLKLPM-KFGNHRGFAFVEYVTQQEAQNALTALSST 662
Query: 386 LVGRKPLYVAVAQRKEDRK---ARLQAHF 411
+ + L + A+ E K AR A F
Sbjct: 663 HLYGRHLVIERAKEGESLKELRARTAAQF 691
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAF---GPVLSCKVAVDASGQ---SKGYGFVQFDNDEAAQ 181
++F+KNL+ ++ L + F+ G +LS KV S G+GFV+FD+ E A
Sbjct: 487 SLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNVSMGFGFVEFDSAETAT 546
Query: 182 NAINKLNGMLIND-----KKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQ 236
+ N L G +++ + +V + Q++ + S T + V+N++ T +DL+Q
Sbjct: 547 SVCNDLQGAVLDSYAHILQPCHVKNVGKVQKKVEKDKSS--TKLLVRNVAFEATKKDLRQ 604
Query: 237 LFAPFGVITSATV-MKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQ 295
LF+PFG I + MK GN + F FV + + A A+ L+ T + + L RA
Sbjct: 605 LFSPFGQIKKLKLPMK--FGNHRGFAFVEYVTQQEAQNALTALSSTHLY-GRHLVIERA- 660
Query: 296 RKAEREAELRAK 307
++ E ELRA+
Sbjct: 661 KEGESLKELRAR 672
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 34/209 (16%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPF---GVITSATVMKDVNGN---SKCFGFVNFESPDSAA 272
+++VKNL+ TDE L++ F+ G I S V K + S FGFV F+S ++A
Sbjct: 487 SLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNVSMGFGFVEFDSAETAT 546
Query: 273 AAVEKLNGTTIND-------DKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLY 325
+ L G ++ V G+ Q+K E++ L
Sbjct: 547 SVCNDLQGAVLDSYAHILQPCHVKNVGKVQKKVEKDK-----------------SSTKLL 589
Query: 326 VKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGK 385
V+N+ + L+ LFS FG I K+ + +GN +G FV + T +EA A+T ++
Sbjct: 590 VRNVAFEATKKDLRQLFSPFGQIKKLKLPM-KFGNHRGFAFVEYVTQQEAQNALTALSST 648
Query: 386 LVGRKPLYVAVAQRKEDRK---ARLQAHF 411
+ + L + A+ E K AR A F
Sbjct: 649 HLYGRHLVIERAKEGESLKELRARTAAQF 677
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 112/256 (43%), Gaps = 22/256 (8%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
++VG L+ + E L +F ++ +++ +R+ ++ + + GYA V FAN + A AL +
Sbjct: 420 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 479
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG----PVLSC 156
+ GK S+ + ++ F+ N+ + +A+ +G ++
Sbjct: 480 KNPVIRGKRCGTSPSEDNDTL--------FLGNICNTWTKEAVKQKLKDYGVEGVENITL 531
Query: 157 KVAVDASGQSKGYGFVQFDNDEAAQNAINKLN------GMLINDKKVYVGLFVRHQERGR 210
V G S+G+ F++F A A +L G KV +R +
Sbjct: 532 VPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPD--- 588
Query: 211 ANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPD 269
+ +V++ L ++ +++ +G I + + ++ + K GFV+F + +
Sbjct: 589 PEIMAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHE 648
Query: 270 SAAAAVEKLNGTTIND 285
+A A V+ +N + + D
Sbjct: 649 AALACVDGVNKSELGD 664
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 48/313 (15%)
Query: 121 IRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDAS-GQSKGYGFVQFDNDEA 179
IRK +F+ LD + L F G VL ++ ++S +++GY V+F N E
Sbjct: 414 IRKE--HEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEH 471
Query: 180 AQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTN--VYVKNLSESCTDEDLKQL 237
A+ A++++ +I K R SP N +++ N+ + T E +KQ
Sbjct: 472 AKKALSEMKNPVIRGK--------------RCGTSPSEDNDTLFLGNICNTWTKEAVKQK 517
Query: 238 FAPFGV--ITSATVMKDV--NGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGR 293
+GV + + T++ DV G S+ F F+ F A A ++L + G
Sbjct: 518 LKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGV------IFGH 571
Query: 294 AQRKAERE-AELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFK 352
A+R A+ AE + + E ++ Q ++++ L + +++ +++ +G I K
Sbjct: 572 AERTAKVAFAEPIREPDPEIMA-----QVKSVFINGLPLHWDEDHVREHLKSYGEIV--K 624
Query: 353 VMLD---SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQA 409
++L S K GFV FST E A + +N +G + + +ARL
Sbjct: 625 IVLARKMSTSKRKDHGFVDFSTHEAALACVDGVNKSELGDGTSKIKL-------RARLSN 677
Query: 410 HFAQIQ-VPGGMA 421
+ Q V GGM
Sbjct: 678 PLPKTQAVKGGMC 690
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 34/187 (18%)
Query: 204 RHQERGR--ANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFG 261
+H+ GR + S N+YV NLS TD DL LF +G + S T +++ +
Sbjct: 11 QHEGSGRYSEDSSTPSNNLYVANLSPDVTDSDLMDLFVQYGALDSVTSY-----SARNYA 65
Query: 262 FVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQG 321
FV F+ D A AA L G R LR +F R ++ K
Sbjct: 66 FVFFKRIDDAKAAKNALQGFNF----------------RGNSLRIEF--ARPAKTCK--- 104
Query: 322 ANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTE 381
L+V + + E L+ F +FG + FK D + + V F ++A QAM
Sbjct: 105 -QLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRD-----RNTACVEFFNLDDAIQAMKI 158
Query: 382 MNGKLVG 388
MNGK +G
Sbjct: 159 MNGKHIG 165
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 34/187 (18%)
Query: 204 RHQERGR--ANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFG 261
+H+ GR + S N+YV NLS TD DL LF +G + S T +++ +
Sbjct: 11 QHEGSGRYSEDSSTPSNNLYVANLSPDVTDSDLMDLFVQYGALDSVTSY-----SARNYA 65
Query: 262 FVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQG 321
FV F+ D A AA L G R LR +F R ++ K
Sbjct: 66 FVFFKRIDDAKAAKNALQGFNF----------------RGNSLRIEF--ARPAKTCK--- 104
Query: 322 ANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTE 381
L+V + + E L+ F +FG + FK D + + V F ++A QAM
Sbjct: 105 -QLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRD-----RNTACVEFFNLDDAIQAMKI 158
Query: 382 MNGKLVG 388
MNGK +G
Sbjct: 159 MNGKHIG 165
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+++ L+ T + F +G IT + +MKD G + FGF+ + P +E
Sbjct: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIE-- 104
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+ IN +V R A + R K ++V + N+ +++
Sbjct: 105 DSHIINSKQVEIKRTIPRGAVGSKDFRTK---------------KIFVGGIPSNVTEDEF 149
Query: 339 KDLFSEFGTITSFKVMLDSYGN-SKGSGFVAFSTPEEANQAMTEMNGKL 386
+D F+ +G + ++M D N S+G GFV F T EEA + M K+
Sbjct: 150 RDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDT-EEAVDDLLSMGNKI 197
>Medtr2g070540.1 | CTC-interacting domain protein | HC |
chr2:29723724-29729859 | 20130731
Length = 298
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
++YV D++ +V E +L LF+ Q++ R+C D S L +A+V FA+ A AL L
Sbjct: 114 TVYVSDIDQHVTEERLAALFTNCGQVIDCRICGD--PHSVLRFAFVEFADEHGARAALNL 171
Query: 100 ----LNFTPVNGKPIRIMFSQRDPSI-------RKSGYANVFIKNLDTSIDNKALHDTF- 147
L + PV P + +P+ R+ V+ N+D I + + F
Sbjct: 172 GGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFE 231
Query: 148 AAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG 200
++ G V ++ D S FV+F E+A A+N +GML+ + + V
Sbjct: 232 SSCGEVTRLRLLGDQV-HSTRIAFVEFAMAESAIVALN-CSGMLLGTQPIRVS 282
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 15/173 (8%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
++++ L T E L+ LF+ +G + A V+ D G SK +GFV F D A A+ +
Sbjct: 75 LFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALREP 134
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+ D +V A A Q +I YV N+ ++ +KL
Sbjct: 135 SKRI--DGRVTVTQLAAAGNSGSNTNAADVAQRKI-----------YVSNVPPDLPGDKL 181
Query: 339 KDLFSEFGTITSFKVMLDS-YGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRK 390
FS +G I + D G SKG + TPE AN A++E + GR+
Sbjct: 182 LAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQ 234
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 9/164 (5%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDN 176
DP I + +FI+ L + L F+ +G + V VD A+G+SKGYGFV F +
Sbjct: 67 DPDISRR---KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLH 123
Query: 177 DEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFT--NVYVKNLSESCTDEDL 234
+ A A+ + + + D +V V G + +YV N+ + L
Sbjct: 124 VDGALLALREPSKRI--DGRVTVTQLAAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKL 181
Query: 235 KQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEK 277
F+ +G I + D G SK F +++P+ A AAV +
Sbjct: 182 LAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSE 225
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 51 NEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELLNFTPVNGKPI 110
E +Y+ FS+ ++ +R+ D+ R S G Y+ F +A A+ L+ + G+P+
Sbjct: 227 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-ALSGQLLLGQPV 285
Query: 111 RIMFSQRDPSIRKS----GYANV-----------FIKNLDTSIDNKALHDTFAAFGPVLS 155
+ S+ + ++ +S G A V ++ NL ++ L + F FG V
Sbjct: 286 MVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEV 345
Query: 156 CKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGML 191
++ +D +G KG+GF+QF + E A+ A LNG L
Sbjct: 346 VQLPLDLETGHCKGFGFIQFAHIEHAK-AAQSLNGKL 381
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 51 NEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELLNFTPVNGKPI 110
E +Y+ FS+ ++ +R+ D+ R S G Y+ F +A A+ L+ + G+P+
Sbjct: 227 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-ALSGQLLLGQPV 285
Query: 111 RIMFSQRDPSIRKS----GYANV-----------FIKNLDTSIDNKALHDTFAAFGPVLS 155
+ S+ + ++ +S G A V ++ NL ++ L + F FG V
Sbjct: 286 MVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEV 345
Query: 156 CKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGML 191
++ +D +G KG+GF+QF + E A+ A LNG L
Sbjct: 346 VQLPLDLETGHCKGFGFIQFAHIEHAK-AAQSLNGKL 381
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 51 NEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELLNFTPVNGKPI 110
E +Y+ FS+ ++ +R+ D+ R S G Y+ F +A A+ L+ + G+P+
Sbjct: 227 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-ALSGQLLLGQPV 285
Query: 111 RIMFSQRDPSIRKS----GYANV-----------FIKNLDTSIDNKALHDTFAAFGPVLS 155
+ S+ + ++ +S G A V ++ NL ++ L + F FG V
Sbjct: 286 MVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEV 345
Query: 156 CKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGML 191
++ +D +G KG+GF+QF + E A+ A LNG L
Sbjct: 346 VQLPLDLETGHCKGFGFIQFAHIEHAK-AAQSLNGKL 381
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 121 IRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEA 179
+R +FI L + + L DTF G ++ KV + +G+SKGYGFV+F+++ A
Sbjct: 27 VRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETA 86
Query: 180 AQNAINKLNGMLINDKKVYVG 200
A A +L+G +++ +++ VG
Sbjct: 87 AATARKELHGQIVDGRRIRVG 107
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 122 RKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAA 180
R++ +V + NL LH+ F FG V VA+D +G S+G+GFV F N E A
Sbjct: 194 RRNDENSVRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDA 253
Query: 181 QNAINKLNG 189
Q AINKLNG
Sbjct: 254 QRAINKLNG 262
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEK 277
+V V NLSE + DL +LF FG ++ V D N G S+ FGFVNF + + A A+ K
Sbjct: 200 SVRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINK 259
Query: 278 LNG 280
LNG
Sbjct: 260 LNG 262
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 11/177 (6%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEK- 277
+++ +S +E LK+ F+ +G + + +VM++ N G + FGFV F P +E
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 278 --LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
++G T++ + R ++ + ++ ++V L + +
Sbjct: 68 HVIDGRTVDAKRAF--SREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAE 125
Query: 336 EKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAM----TEMNGKLV 387
EK + F +G +T VM D + G +G GF+ F T E ++ + ++NGK V
Sbjct: 126 EKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQV 182
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 27/182 (14%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L++G + + NE +L + FS +++ V R++ G+ +V F++ LE
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 101 NFTPVNGKPI--RIMFSQRDPSIR------------KSGYAN------VFIKNLDTSIDN 140
+ ++G+ + + FS+ D I SG +F+ L ++
Sbjct: 68 HV--IDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAE 125
Query: 141 KALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINK----LNGMLINDK 195
+ F A+G V V D +G+ +G+GF+ FD +EA ++K LNG + K
Sbjct: 126 EKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVK 185
Query: 196 KV 197
+
Sbjct: 186 RA 187
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 11/177 (6%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEK- 277
+++ +S +E LK+ F+ +G + + +VM++ N G + FGFV F P +E
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 278 --LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
++G T++ + R ++ + ++ ++V L + +
Sbjct: 68 HVIDGRTVDAKRAF--SREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAE 125
Query: 336 EKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAM----TEMNGKLV 387
EK + F +G +T VM D + G +G GF+ F T E ++ + ++NGK V
Sbjct: 126 EKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQV 182
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 27/182 (14%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L++G + + NE +L + FS +++ V R++ G+ +V F++ LE
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 101 NFTPVNGKPI--RIMFSQRDPSIR------------KSGYAN------VFIKNLDTSIDN 140
+ ++G+ + + FS+ D I SG +F+ L ++
Sbjct: 68 HV--IDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAE 125
Query: 141 KALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINK----LNGMLINDK 195
+ F A+G V V D +G+ +G+GF+ FD +EA ++K LNG + K
Sbjct: 126 EKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVK 185
Query: 196 KV 197
+
Sbjct: 186 RA 187
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+F+ L S+D K+L D F++FG V ++ D SG+++G+GFV F N++AA++A + +
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 188 NGMLINDKKVYVGLFVRHQERGRANGSPKFTN 219
+G + + + + F + RG P+FT+
Sbjct: 98 DGKALLGRPLRIN-FALEKPRGIPVVVPRFTD 128
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDS-YGNSKGSGFVAFSTPEEANQAMTEM 382
L+V L +++++ LKD FS FG +T +++ D G ++G GFV FS + A A M
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 383 NGKLVGRKPLYVAVAQRK 400
+GK + +PL + A K
Sbjct: 98 DGKALLGRPLRINFALEK 115
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L+VG L +V+E L D FS + +R+ D+ + G+ +V F+N A +A + +
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 101 NFTPVNGKPIRIMFSQRDP 119
+ + G+P+RI F+ P
Sbjct: 98 DGKALLGRPLRINFALEKP 116
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 18/171 (10%)
Query: 51 NEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELLNFTPVNGKPI 110
E +Y+ FS+ ++ +R+ D+ R S G Y+ F +A A+ L+ + G+P+
Sbjct: 214 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-ALSGQLLLGQPV 272
Query: 111 RIMFSQRDPSIRKSGYAN--------------VFIKNLDTSIDNKALHDTFAAFGPVLSC 156
+ S+ + ++ +S ++ +++ NL ++ L + F FG +
Sbjct: 273 MVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVV 332
Query: 157 KVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGML-INDKKVYVGLFVRH 205
++ +D +G KG+GFVQF + E A+ A LNG L I + + V H
Sbjct: 333 QLPLDMETGHCKGFGFVQFAHLEHAK-AAQSLNGKLEIAGRTIKVSSVTDH 382
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 121 IRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAA 180
I SG +F+ NL S+ + F G V+ + + D G+ KG+G V+F + EAA
Sbjct: 335 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAA 394
Query: 181 QNAINKLNGMLINDKKVYV------GLFVRH-------QERGRANGSPKFTNVYVKNLSE 227
Q+A+ +NG + + V + G F + Q GR F + KNL E
Sbjct: 395 QSALE-MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGE 453
Query: 228 SCTDEDLKQLFAPFGVI----TSATVMKDV-NGNSKCFGFVNFESPDSAAAAVE 276
DE +L FG T ++ KD +G SK F +++F+ DS + A+E
Sbjct: 454 ---DEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE 504
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 121 IRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAA 180
I SG +F+ NL S+ + F G V+ + + D G+ KG+G V+F + EAA
Sbjct: 323 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAA 382
Query: 181 QNAINKLNGMLINDKKVYV------GLFVRH-------QERGRANGSPKFTNVYVKNLSE 227
Q+A+ +NG + + V + G F + Q GR F + KNL E
Sbjct: 383 QSALE-MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGE 441
Query: 228 SCTDEDLKQLFAPFGVI----TSATVMKDV-NGNSKCFGFVNFESPDSAAAAVE 276
DE +L FG T ++ KD +G SK F +++F+ DS + A+E
Sbjct: 442 ---DEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE 492
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 25/180 (13%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQ-SKGYGFVQFDNDEAAQNAIN 185
A +F+ + L F +G VL ++ D + + +G+GFV F + +A NA+
Sbjct: 10 AKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQ 69
Query: 186 KLNGMLINDKKVYVGLFVRHQE---------RGR--------ANGSPKFTNVYVKNLSES 228
+ +L +KV V + E RG N + ++V L +
Sbjct: 70 DTHAIL--GRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPAN 127
Query: 229 CTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEK----LNGTTI 283
+ E+ K+ F FG IT VM+D + + FGF+ F+S DS + + + LNG +
Sbjct: 128 MSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQV 187
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 121 IRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAA 180
I SG +F+ NL S+ + F G V+ + + D G+ KG+G V+F + EAA
Sbjct: 358 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAA 417
Query: 181 QNAINKLNGMLINDKKVYV------GLFVRH-------QERGRANGSPKFTNVYVKNLSE 227
Q+A+ +NG + + V + G F + Q GR F + KNL E
Sbjct: 418 QSALE-MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGE 476
Query: 228 SCTDEDLKQLFAPFGVI----TSATVMKDV-NGNSKCFGFVNFESPDSAAAAVE 276
DE +L FG T ++ KD +G SK F +++F+ DS + A+E
Sbjct: 477 ---DEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE 527
>Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165361 | 20130731
Length = 876
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ NV +++L LF Q I ++ C+ + G+ +++ + +
Sbjct: 193 GEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHR------GFVMISYYDIRA 246
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L P+ + + I FS + +PS + + + NLD S+ N L F A+
Sbjct: 247 ARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAY 306
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKV 197
G V + + + + F++F + AA A+ LN I K++
Sbjct: 307 GEVKEIR----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRI 349
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 121 IRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAA 180
I SG +F+ NL S+ + F G V+ + + D G+ KG+G V+F + EAA
Sbjct: 370 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAA 429
Query: 181 QNAINKLNGMLINDKKVYV------GLFVRH-------QERGRANGSPKFTNVYVKNLSE 227
Q+A+ +NG + + V + G F + Q GR F + KNL E
Sbjct: 430 QSALE-MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGE 488
Query: 228 SCTDEDLKQLFAPFGVI----TSATVMKDV-NGNSKCFGFVNFESPDSAAAAVE 276
DE +L FG T ++ KD +G SK F +++F+ DS + A+E
Sbjct: 489 ---DEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE 539
>Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16170586-16165028 | 20130731
Length = 751
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ NV +++L LF Q I ++ C+ + G+ +++ + +
Sbjct: 88 GEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHR------GFVMISYYDIRA 141
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L P+ + + I FS + +PS + + + NLD S+ N L F A+
Sbjct: 142 ARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAY 201
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKV 197
G V + + + + F++F + AA A+ LN I K++
Sbjct: 202 GEVKEIR----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRI 244
>Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16172198-16165028 | 20130731
Length = 867
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ NV +++L LF Q I ++ C+ + G+ +++ + +
Sbjct: 204 GEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHR------GFVMISYYDIRA 257
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L P+ + + I FS + +PS + + + NLD S+ N L F A+
Sbjct: 258 ARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAY 317
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKV 197
G V + + + + F++F + AA A+ LN I K++
Sbjct: 318 GEVKEIR----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRI 360
>Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 853
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ NV +++L LF Q I ++ C+ + G+ +++ + +
Sbjct: 190 GEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHR------GFVMISYYDIRA 243
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L P+ + + I FS + +PS + + + NLD S+ N L F A+
Sbjct: 244 ARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAY 303
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKV 197
G V + + + + F++F + AA A+ LN I K++
Sbjct: 304 GEVKEIR----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRI 346
>Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883965-21877390 | 20130731
Length = 865
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ NV + +L LF Q I ++ C+ + G+ +++ + +
Sbjct: 191 GEHPSRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHR------GFVMISYYDIRA 244
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L P+ + + I FS + +PS + + + NLD S+ N+ L F A+
Sbjct: 245 ARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAY 304
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKV 197
G V + + + + F+++ + AA+ A+ LN I K++
Sbjct: 305 GEVKEIR----ETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRI 347
>Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883858-21877390 | 20130731
Length = 865
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ NV + +L LF Q I ++ C+ + G+ +++ + +
Sbjct: 191 GEHPSRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHR------GFVMISYYDIRA 244
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L P+ + + I FS + +PS + + + NLD S+ N+ L F A+
Sbjct: 245 ARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAY 304
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKV 197
G V + + + + F+++ + AA+ A+ LN I K++
Sbjct: 305 GEVKEIR----ETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRI 347
>Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 856
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 13/167 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ NV +++L LF Q I ++ C+ + G+ +++ + +
Sbjct: 193 GEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHR------GFVMISYYDIRA 246
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L P+ + + I FS + +PS + + + NLD S+ N L F A+
Sbjct: 247 ARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAY 306
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKV 197
G V + + + + F++F + AA A+ LN I K++
Sbjct: 307 GEVKEIR----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRI 349
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDN 176
DP+ RK +F+ L + L TF+ +G + CK D ASG+SKGY F+ F +
Sbjct: 161 DPAHRK-----IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKH 215
Query: 177 DEAAQNAINKLNGMLINDKK----VYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDE 232
+ A+ + ++ N G ++V N+S +
Sbjct: 216 RTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQ 275
Query: 233 DLKQLFAPFGVITSATV-MKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYA 291
L + F FG + + + G K F +++ +SA A+E+ N + + LY
Sbjct: 276 KLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN--KVFEGHTLYC 333
Query: 292 GRA 294
+A
Sbjct: 334 QKA 336
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 208 RGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFE 266
R A+ P ++V L T E L F+ +G I + D +G SK + F+ F+
Sbjct: 155 RQLADVDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFK 214
Query: 267 SPDSAAAAV---EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGAN 323
A+ +K+ G ++ AG A +++ Q +I
Sbjct: 215 HRTGCRRALKQPQKVIGNRTTSCQLASAGPV-PAPPPNAPPVSEYTQRKI---------- 263
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEM 382
+V N+ +I+ +KL + F +FG + + LD + G KG + T E A +A+ E
Sbjct: 264 -FVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEP 322
Query: 383 N 383
N
Sbjct: 323 N 323
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDN 176
DP+ RK +F+ L + L TF+ +G + CK D ASG+SKGY F+ F +
Sbjct: 161 DPAHRK-----IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKH 215
Query: 177 DEAAQNAINKLNGMLINDKK----VYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDE 232
+ A+ + ++ N G ++V N+S +
Sbjct: 216 RTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQ 275
Query: 233 DLKQLFAPFGVITSATV-MKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYA 291
L + F FG + + + G K F +++ +SA A+E+ N + + LY
Sbjct: 276 KLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN--KVFEGHTLYC 333
Query: 292 GRA 294
+A
Sbjct: 334 QKA 336
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 208 RGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFE 266
R A+ P ++V L T E L F+ +G I + D +G SK + F+ F+
Sbjct: 155 RQLADVDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFK 214
Query: 267 SPDSAAAAV---EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGAN 323
A+ +K+ G ++ AG A +++ Q +I
Sbjct: 215 HRTGCRRALKQPQKVIGNRTTSCQLASAGPV-PAPPPNAPPVSEYTQRKI---------- 263
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEM 382
+V N+ +I+ +KL + F +FG + + LD + G KG + T E A +A+ E
Sbjct: 264 -FVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEP 322
Query: 383 N 383
N
Sbjct: 323 N 323
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDN 176
DP+ RK +F+ L + L TF+ +G + CK D ASG+SKGY F+ F +
Sbjct: 161 DPAHRK-----IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKH 215
Query: 177 DEAAQNAINKLNGMLINDKK----VYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDE 232
+ A+ + ++ N G ++V N+S +
Sbjct: 216 RTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQ 275
Query: 233 DLKQLFAPFGVITSATV-MKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYA 291
L + F FG + + + G K F +++ +SA A+E+ N + + LY
Sbjct: 276 KLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN--KVFEGHTLYC 333
Query: 292 GRA 294
+A
Sbjct: 334 QKA 336
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 208 RGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFE 266
R A+ P ++V L T E L F+ +G I + D +G SK + F+ F+
Sbjct: 155 RQLADVDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFK 214
Query: 267 SPDSAAAAV---EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGAN 323
A+ +K+ G ++ AG A +++ Q +I
Sbjct: 215 HRTGCRRALKQPQKVIGNRTTSCQLASAGPV-PAPPPNAPPVSEYTQRKI---------- 263
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEM 382
+V N+ +I+ +KL + F +FG + + LD + G KG + T E A +A+ E
Sbjct: 264 -FVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEP 322
Query: 383 N 383
N
Sbjct: 323 N 323
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVE 276
T ++V LS T + L+ LF+PFGV+T AT++ D N K FGFV+++S A A +
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 277 KLNGTTINDDKVLYAGRAQRK 297
LNG I D ++++ A+ K
Sbjct: 67 ALNG-RIVDGRLIFVEHAKPK 86
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 319 LQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQ 377
L L++ L DEKL + FS FG + KV+ D G SKG FV++ST EEA +
Sbjct: 32 LTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEK 91
Query: 378 AMTEMNGKLVGRKPLYVAVAQRKEDR 403
A MN K + ++V A+ +E R
Sbjct: 92 AREGMNAKFLDGWVIFVDPAKPREPR 117
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDS-YGNSKGSGFVAFSTPEEANQAMTEM 382
L+ +L + +ND+ L F+ F + +V+ D G +KG GF++F+ P + A+ EM
Sbjct: 134 LFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKEM 193
Query: 383 NGKLVGRKPLYVAVAQRKE 401
NGK VG +P+ + ++ +E
Sbjct: 194 NGKYVGNRPIKLRKSKWRE 212
>Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:46405206-46401029 | 20130731
Length = 252
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 23/196 (11%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
++ ++YVG+L G++ ++ DLF + IV I + + GYA+V F +A+DA +A
Sbjct: 5 SSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIEL---KIPPRPPGYAFVEFEDARDAEDA 61
Query: 97 LELLNFTPVNGKPIRIMFSQ-----------------RDPSIRKSGYANVFIKNLDTSID 139
+ + +G +R+ + + K V + L S
Sbjct: 62 IRYRDGYKFDGFRLRVELAHGGRGYSSSVDRYSSYSSGSRGVSKHSEYRVLVTGLPPSAS 121
Query: 140 NKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
+ L D G V +V D G + G V++ N E + AI KL+ + +
Sbjct: 122 WQDLKDHMRRAGDVCFSQVFRDRGGMT---GIVEYTNYEDMKYAIRKLDDSEFRNAFSWA 178
Query: 200 GLFVRHQERGRANGSP 215
+ VR +R R SP
Sbjct: 179 YIRVREYDRRRYTRSP 194
>Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:46405226-46398545 | 20130731
Length = 292
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 23/196 (11%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
++ ++YVG+L G++ ++ DLF + IV I + + GYA+V F +A+DA +A
Sbjct: 5 SSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIEL---KIPPRPPGYAFVEFEDARDAEDA 61
Query: 97 LELLNFTPVNGKPIRIMFSQ-----------------RDPSIRKSGYANVFIKNLDTSID 139
+ + +G +R+ + + K V + L S
Sbjct: 62 IRYRDGYKFDGFRLRVELAHGGRGYSSSVDRYSSYSSGSRGVSKHSEYRVLVTGLPPSAS 121
Query: 140 NKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
+ L D G V +V D G + G V++ N E + AI KL+ + +
Sbjct: 122 WQDLKDHMRRAGDVCFSQVFRDRGGMT---GIVEYTNYEDMKYAIRKLDDSEFRNAFSWA 178
Query: 200 GLFVRHQERGRANGSP 215
+ VR +R R SP
Sbjct: 179 YIRVREYDRRRYTRSP 194
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEK 277
+V V NLSE + DL +LF PFG ++ V D G S+ FGFVNF S + A A+ K
Sbjct: 212 SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINK 271
Query: 278 LNG 280
LNG
Sbjct: 272 LNG 274
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 107 GKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSC-KVAVDASGQ 165
GK + M D ++++ +F+ NL S N L TF+ GPV C V S Q
Sbjct: 2 GKKNKAMKENSDGTVKQCPLT-LFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQ 60
Query: 166 SKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
+G+G+VQF ++ A AI N L+ D+K+ V
Sbjct: 61 HRGFGYVQFAVEKDANQAIELKNSSLVGDRKIVV 94
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 121 IRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEA 179
+R + +FI L ++D+++L D F +G V+ +V D +G+S+G+GFV F ++E+
Sbjct: 30 LRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEES 89
Query: 180 AQNAINKLNGMLINDKKVYV 199
A +A++ ++G +N + + V
Sbjct: 90 ATSALS-MDGQDLNGRNIRV 108
>Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512521-46508373 | 20130731
Length = 561
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEK 277
+++YV L TDE ++ +F +G I ++ D KC+ FV F +P SA A+
Sbjct: 7 SSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAIND 66
Query: 278 LNGTTIN 284
+NG TIN
Sbjct: 67 MNGRTIN 73
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 232 EDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLY 290
E LK+ + +G + VMK+ G S+ FG+V F S D A E L+G + D++L
Sbjct: 18 EGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---EVLSGEHVLGDRMLE 74
Query: 291 AGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITS 350
A K E A + +++R ++V + ++ +E + F ++G IT
Sbjct: 75 VKVATPKEEMRAPAK------KVTR--------IFVARIPPSVTEETFRSHFEKYGDITD 120
Query: 351 FKVMLDSYGN-SKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKED 402
+ D +G GF+ F E M+E + +G + V A KED
Sbjct: 121 LYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPKED 171
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 232 EDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLY 290
E LK+ + +G + VMK+ G S+ FG+V F S D A E L+G + D++L
Sbjct: 18 EGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---EVLSGEHVLGDRMLE 74
Query: 291 AGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITS 350
A K E A + +++R ++V + ++ +E + F ++G IT
Sbjct: 75 VKVATPKEEMRAPAK------KVTR--------IFVARIPPSVTEETFRSHFEKYGDITD 120
Query: 351 FKVMLDSYGN-SKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKED 402
+ D +G GF+ F E M+E + +G + V A KED
Sbjct: 121 LYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPKED 171
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 232 EDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLY 290
E LK+ + +G + VMK+ G S+ FG+V F S D A E L+G + D++L
Sbjct: 18 EGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---EVLSGEHVLGDRMLE 74
Query: 291 AGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITS 350
A K E A + +++R ++V + ++ +E + F ++G IT
Sbjct: 75 VKVATPKEEMRAPAK------KVTR--------IFVARIPPSVTEETFRSHFEKYGDITD 120
Query: 351 FKVMLDSYGN-SKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKED 402
+ D +G GF+ F E M+E + +G + V A KED
Sbjct: 121 LYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPKED 171
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 232 EDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLY 290
E LK+ + +G + VMK+ G S+ FG+V F S D A E L+G + D++L
Sbjct: 18 EGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---EVLSGEHVLGDRMLE 74
Query: 291 AGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITS 350
A K E A + +++R ++V + ++ +E + F ++G IT
Sbjct: 75 VKVATPKEEMRAPAK------KVTR--------IFVARIPPSVTEETFRSHFEKYGDITD 120
Query: 351 FKVMLDSYGN-SKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKED 402
+ D +G GF+ F E M+E + +G + V A KED
Sbjct: 121 LYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPKED 171
>Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512527-46508373 | 20130731
Length = 428
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEK 277
+++YV L TDE ++ +F +G I ++ D KC+ FV F +P SA A+
Sbjct: 7 SSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAIND 66
Query: 278 LNGTTIN 284
+NG TIN
Sbjct: 67 MNGRTIN 73
>Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr2:28910323-28904195 | 20130731
Length = 415
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGN-SKGSGFVAFSTPEEANQAMTEM 382
L+V+ L N+N+ LK++FS FG + S ++++D N KG G+V F T EA +A+ M
Sbjct: 102 LHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYM 161
Query: 383 NG 384
+G
Sbjct: 162 DG 163
>Medtr7g024090.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:7894145-7897152 | 20130731
Length = 315
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMN 383
LY+ NLDD +++E + LFSE G + S+ + D +G SKG+ V F+ EA A+ N
Sbjct: 77 LYLSNLDDRVSNEDIHLLFSEEGELESYSIHYDQFGRSKGTAEVVFTRQSEALAALKRYN 136
Query: 384 GKLVGRKPLYVAVA 397
+ K L + +
Sbjct: 137 NMKLDGKTLQIELV 150
>Medtr4g063557.3 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G LY+ NLD ++++ +K+LFSE G + V D G SKG+ V FS ++A A+
Sbjct: 93 GTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVK 152
Query: 381 EMNGKLVGRKPLYVAV 396
N + KP+ + +
Sbjct: 153 RYNNVQLDGKPMKIEI 168
>Medtr4g063557.2 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G LY+ NLD ++++ +K+LFSE G + V D G SKG+ V FS ++A A+
Sbjct: 93 GTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVK 152
Query: 381 EMNGKLVGRKPLYVAV 396
N + KP+ + +
Sbjct: 153 RYNNVQLDGKPMKIEI 168
>Medtr4g063557.1 | RNA and export factor-binding protein | HC |
chr4:23458840-23463583 | 20130731
Length = 263
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G LY+ NLD ++++ +K+LFSE G + V D G SKG+ V FS ++A A+
Sbjct: 93 GTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVK 152
Query: 381 EMNGKLVGRKPLYVAV 396
N + KP+ + +
Sbjct: 153 RYNNVQLDGKPMKIEI 168
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 120 SIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDE 178
+IR A +++ + S D+ L ++FA +G VL +V +D G+SKG+GFV F E
Sbjct: 33 AIRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSE 92
Query: 179 AAQNAINKLNGMLINDKKVYVGLFVRHQERGRA 211
A A+ ++ ++ + V V QER R+
Sbjct: 93 EASAALQAMDNQELHGRTVRVNY---AQERPRS 122
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 319 LQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQ 377
+ A LYV + + +D L++ F+ +G + +V++D G SKG GFV F+T EEA+
Sbjct: 37 MSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASA 96
Query: 378 AMTEMNGKLVGRKPLYVAVAQRK 400
A+ M+ + + + + V AQ +
Sbjct: 97 ALQAMDNQELHGRTVRVNYAQER 119
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 108 KPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQS 166
+ IR M S + G ++ + + S D +L + F+ +G VL ++ +D +G+S
Sbjct: 31 QAIRCMCSAPTTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRS 90
Query: 167 KGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
+G+GF+ F++ E A +AI L+G ++ ++V V
Sbjct: 91 RGFGFITFNSVEEASSAIQALDGQDLHGRRVRV 123
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 120 SIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDE 178
+ R++ +F+ L K L D F+ +G V+ KV D S +SKGYGFV F + +
Sbjct: 25 TFRRAIAFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQD 84
Query: 179 AAQNAINKLNGMLINDKKVYV 199
A+ AI ++N +N + V+V
Sbjct: 85 EAEKAITEMNEKALNGRVVFV 105
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYG-NSKGSGFVAFSTPEEANQAMTEM 382
L+V L + ++ L D FS +G + KV+ D SKG GFV F++ +EA +A+TEM
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 383 NGKLVGRKPLYVAVAQRKEDR 403
N K + + ++V A+ R
Sbjct: 94 NEKALNGRVVFVDYAKPDTKR 114
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L+VG L + E L D FS Q+V +V D+ S GY +V FA+ +A A+ +
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 101 NFTPVNGKPIRIMFSQRD 118
N +NG+ + + +++ D
Sbjct: 94 NEKALNGRVVFVDYAKPD 111
>Medtr3g092510.1 | CTC-interacting domain protein | HC |
chr3:42267137-42262435 | 20130731
Length = 376
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
VYV ++ + T+E L LF G + V D N + F F+ F +SA AAV L+
Sbjct: 194 VYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILR-FAFIEFTDEESARAAV-SLS 251
Query: 280 GTTIN--DDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
GT + +VL + A R++ E+E SR +Y N+D +
Sbjct: 252 GTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSR-------TIYCTNIDKKLTQAD 304
Query: 338 LKDLF-SEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
+K F S G + +++ D Y +S FV F+ E A A++ +G ++G P+ V+
Sbjct: 305 VKHFFESICGEVHRLRLLGD-YQHSTRIAFVEFAVAESAIAALS-CSGVILGALPIRVS 361
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+F+ L K L F FG ++ KV +D S +SKGY F+++ +EAA A+ ++
Sbjct: 194 LFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEM 253
Query: 188 NGMLINDKKVYVGL 201
NG +IN + V +
Sbjct: 254 NGKIINGWMIVVDV 267
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 9/93 (9%)
Query: 108 KPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQS 166
+ IR M S P+ + +FI + S D +L + F+ +G VL ++ +D +G+S
Sbjct: 31 QAIRCMCSA--PTTK------LFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRS 82
Query: 167 KGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
+G+GF+ F++ E A +AI L+G ++ ++V V
Sbjct: 83 RGFGFITFNSVEEASSAIQALDGQDLHGRRVRV 115
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 121 IRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEA 179
+R + +FI L ++D+++L D F +G V+ +V D +G+S+G+GFV F ++E+
Sbjct: 30 LRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEES 89
Query: 180 AQNAINKLNGMLI 192
A +A++ ++G ++
Sbjct: 90 ATSALS-MDGQVV 101
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 322 ANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMT 380
+ ++VK L + +EKL + FS++G + ++L+ + KG G+V F+ EEA +A
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQI 91
Query: 381 EMNGKLVGRKPLYV 394
MNGK++ + LYV
Sbjct: 92 GMNGKILHGRVLYV 105
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 120 SIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDE 178
+IR A +FI + S D L + F+ +G VL K+ +D +G+S+G+GF+ F E
Sbjct: 33 AIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSE 92
Query: 179 AAQNAINKLNGMLINDKKVYV 199
A +A+ ++ ++ + V V
Sbjct: 93 EASSALQAMDNKELDGRTVRV 113
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 120 SIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDE 178
+IR A +FI + S D L + F+ +G VL K+ +D +G+S+G+GF+ F E
Sbjct: 33 AIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSE 92
Query: 179 AAQNAINKLNGMLINDKKVYV 199
A +A+ ++ ++ + V V
Sbjct: 93 EASSALQAMDNKELDGRTVRV 113
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFG-VITSATVMKDVNGNSKCFGFVNFESPDSAAAAVE 276
T + +N+ S T ED++ LF +G V+ M + N N + FV SP+ A+ A+
Sbjct: 89 TRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRN-RGLAFVEMGSPEEASEALN 147
Query: 277 KL-----NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDD 331
L +G IN + YA + K E K NL+V N
Sbjct: 148 SLQSYEFDGRIIN---IQYAKPKKEKIPPPVE-------------RKPITYNLFVANFPY 191
Query: 332 NINDEKLKDLF-SEFGTITSFKVML-DSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGR 389
+ +K+ F S G + S +V+ ++ G GFV++ + +EA++A+ E GK
Sbjct: 192 EARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMG 251
Query: 390 KPLYVAVAQR 399
+PL VA ++R
Sbjct: 252 RPLRVAPSKR 261
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFG-VITSATVMKDVNGNSKCFGFVNFESPDSAAAAVE 276
T + +N+ S T ED++ LF +G V+ M + N N + FV SP+ A+ A+
Sbjct: 89 TRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRN-RGLAFVEMGSPEEASEALN 147
Query: 277 KL-----NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDD 331
L +G IN + YA + K E K NL+V N
Sbjct: 148 SLQSYEFDGRIIN---IQYAKPKKEKIPPPVE-------------RKPITYNLFVANFPY 191
Query: 332 NINDEKLKDLF-SEFGTITSFKVML-DSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGR 389
+ +K+ F S G + S +V+ ++ G GFV++ + +EA++A+ E GK
Sbjct: 192 EARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMG 251
Query: 390 KPLYVAVAQR 399
+PL VA ++R
Sbjct: 252 RPLRVAPSKR 261
>Medtr3g065490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:29610838-29605718 | 20130731
Length = 291
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMN 383
LYV NLD + +E +++LFSE G + + V D G+ GS V ++ +A A+ N
Sbjct: 111 LYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYN 170
Query: 384 GKLVGRKPLYVAV 396
L+ KP+ + +
Sbjct: 171 NVLLDGKPMKIEI 183
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
TN++V LS+ T E L++ F FG + A V+ D V+G SK FGFV + + + AA +E
Sbjct: 51 TNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIE 110
Query: 277 KLNG 280
++G
Sbjct: 111 GMDG 114
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 294 AQRKAEREAELRAK---FEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITS 350
A K E +LR+ F+ R + L+V + N +++ L D FS++G +
Sbjct: 15 ANTKITSELKLRSSPSVFQAIRC--FSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLD 72
Query: 351 FKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGK-LVGRK 390
++++D G SKG GFV ++T EEA+ A+ ++G+ L GR+
Sbjct: 73 ARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQDLYGRR 114
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 294 AQRKAEREAELRAK---FEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITS 350
A K E +LR+ F+ R + L+V + N +++ L D FS++G +
Sbjct: 15 ANTKITSELKLRSSPSVFQAIRC--FSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLD 72
Query: 351 FKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGK-LVGRK 390
++++D G SKG GFV ++T EEA+ A+ ++G+ L GR+
Sbjct: 73 ARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQDLYGRR 114
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 130 FIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLN 188
F+ L + DN+AL F+ +G ++ K+ D +G+S+G+GFV F N+++ +AI +N
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 189 GMLINDKKVYV 199
G ++ + + V
Sbjct: 69 GQDLDGRNITV 79
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 130 FIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLN 188
F+ L + DN+AL F+ +G ++ K+ D +G+S+G+GFV F N+++ +AI +N
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 189 GMLINDKKVYV 199
G ++ + + V
Sbjct: 69 GQDLDGRNITV 79