Miyakogusa Predicted Gene
- Lj5g3v1888380.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1888380.1 Non Characterized Hit- tr|I1NH73|I1NH73_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.22176
PE,74.1,0,RRM_1,RNA recognition motif domain; CSTF2_hinge,Cleavage
stimulation factor subunit 2, hinge domain;,CUFF.56100.1
(526 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 605 e-173
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 70 6e-12
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-11
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-11
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-11
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 66 7e-11
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 65 1e-10
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 65 1e-10
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 65 1e-10
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 65 2e-10
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 64 4e-10
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 64 5e-10
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 64 5e-10
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 64 5e-10
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 64 5e-10
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 64 5e-10
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 63 6e-10
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 63 6e-10
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-09
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-09
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 62 1e-09
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 62 1e-09
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 62 1e-09
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-09
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-09
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-09
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 61 2e-09
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 61 2e-09
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 3e-09
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-09
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-09
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-09
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-09
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-09
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 6e-09
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 6e-09
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 8e-09
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 1e-08
Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC... 59 2e-08
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 3e-08
Medtr8g104260.1 | hydroxyproline-rich glycoprotein-like protein ... 58 3e-08
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 4e-08
Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC... 55 1e-07
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC... 55 2e-07
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 55 2e-07
Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC... 55 2e-07
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 55 2e-07
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 54 3e-07
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 5e-07
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 54 5e-07
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 54 5e-07
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 54 5e-07
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 54 5e-07
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 54 5e-07
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 54 5e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-07
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-07
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-07
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 53 8e-07
Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr2g090655.1 | nuclear cap-binding protein subunit 2 | HC | c... 52 1e-06
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 52 2e-06
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 52 2e-06
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 52 2e-06
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 52 2e-06
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 52 2e-06
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 52 2e-06
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 52 2e-06
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr1g083400.1 | pre-mRNA-splicing factor SF2-like protein | HC... 50 4e-06
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 50 5e-06
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 50 5e-06
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 50 8e-06
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 8e-06
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 8e-06
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 605 bits (1561), Expect = e-173, Method: Compositional matrix adjust.
Identities = 332/528 (62%), Positives = 371/528 (70%), Gaps = 38/528 (7%)
Query: 1 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDE 60
MA+ QSQHR VFVGNIPYDATEEQL EIC+EVGPV+SFRLV DRETGKPKGYGFCEY DE
Sbjct: 21 MAAPQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDE 80
Query: 61 ETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTANVDTQKQAGIPVVH 120
ETALSARRNLQGYEINGRQLRVDFAENDKGNDRN++QGRGGPGMT N D QKQ GIP V
Sbjct: 81 ETALSARRNLQGYEINGRQLRVDFAENDKGNDRNKDQGRGGPGMTTNADPQKQVGIPAVQ 140
Query: 121 GE---AVQHQPIGLHXXXXXXXXXXXXLGGPQSGIXXXXXXXXXXXXXXXDPLTLHLAKM 177
GE A QHQP+GLH LGG Q+GI DPLTLHLAKM
Sbjct: 141 GESTQAAQHQPMGLHIAVTAAAVMTAALGGAQTGIPSNQNGLQSQQALANDPLTLHLAKM 200
Query: 178 SRFQLIEVISELKGMATQNNDLARQLLLSRPQLPKALFQAQIMLQMVTPQVLQMPNLRMV 237
SR QL E+ISELKGMAT N DL+RQLLLSRPQLPKALFQAQIML MV PQ+LQMPNLR V
Sbjct: 201 SRSQLSEIISELKGMATHNKDLSRQLLLSRPQLPKALFQAQIMLGMVNPQMLQMPNLRQV 260
Query: 238 SDQTSPSLANEGPGGQP--ALLQTLSGLPLYGQNKMQSGLTPYVEEGQVSIMPHNPLAPN 295
SDQ S SL NEG GQ L+ T++GLP YGQ+K+Q GLTPY++EGQVS +PHNP P+
Sbjct: 261 SDQPSQSLMNEGHLGQTQQTLVPTVAGLPPYGQSKLQFGLTPYIQEGQVSTLPHNPSVPS 320
Query: 296 QLTAHSKPPVQPRIPLQHYPTNQVVQIGTMSGQSNLVLPSVRPPSGVDLPIRPPIQPTSS 355
QLTA+ KPP+QPRIP QH+ +N VQ G +GQ+NL+LPS+RPP+ + RPP Q +S
Sbjct: 321 QLTANPKPPLQPRIPPQHHQSNHFVQPG--AGQNNLILPSIRPPTTGNFSARPPFQQANS 378
Query: 356 TALNQQMQGS-LPHSVHVGRSTGAHNIQMVRPDTSFQPGPS------------------- 395
T +NQQ S L V VG ST +HNI MVRPD SFQ GPS
Sbjct: 379 TVVNQQPHASFLQQPVRVGSSTVSHNIHMVRPDASFQAGPSMPSGVSQLFSKEGDRPSNA 438
Query: 396 -----TSSSAYSNT--GVEKTNMVQDFSESFTHPSKFMRSDKGRIPSLPAGIKDLPVTIG 448
SSS YSN GVE T +V D ESFT PSK R + GR L AG D+P++ G
Sbjct: 439 LEDWAKSSSKYSNISFGVENTGVVHDNPESFTRPSKLTRLNDGR--GLSAGTSDVPISNG 496
Query: 449 SSHVLGSSSLPAPTASKAEVRYXXXXXXXXXXXXDVESVLLQQVLNLT 496
SSHVLGSSSLP P KA+VR+ DVESVLLQQVLNLT
Sbjct: 497 SSHVLGSSSLPVPAVPKADVRH--SDQQSSQLPSDVESVLLQQVLNLT 542
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VGN+P+ T QL +I E G VVS +V DR T + +G+ F K E A A R
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 71 QGYEINGRQLRVDFAENDKGNDR 93
G ++ GR +V+F E KG +R
Sbjct: 171 DGSQVGGRSAKVNFPEVPKGGER 193
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VF+G +P D +++ + E+C+ +G +V +L+ DRETG+ KGY F YK +E A A ++
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 71 QGYEINGRQLRVDFAE 86
E G+ LR +E
Sbjct: 166 HNKEFKGKTLRCLLSE 181
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
+++ SQ + ++V NIP + T EQL E+ + G V + + +GK + +GF Y +
Sbjct: 273 SAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERS 331
Query: 62 TALSARRNLQGYEINGRQLRVDFAE 86
+AL A + + YEI+G+ L V A+
Sbjct: 332 SALKAVKETEKYEIDGQALEVVIAK 356
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VF+G +P D +++ + E+C+ +G +V +L+ DRETG+ KGY F YK +E A A ++
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 71 QGYEINGRQLRVDFAE 86
E G+ LR +E
Sbjct: 166 HNKEFKGKTLRCLLSE 181
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
+++ SQ + ++V NIP + T EQL E+ + G V + + +GK + +GF Y +
Sbjct: 273 SAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERS 331
Query: 62 TALSARRNLQGYEINGRQLRVDFAE 86
+AL A + + YEI+G+ L V A+
Sbjct: 332 SALKAVKETEKYEIDGQALEVVIAK 356
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VF+G +P D +++ + E+C+ +G +V +L+ DRETG+ KGY F YK +E A A ++
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 71 QGYEINGRQLRVDFAE 86
E G+ LR +E
Sbjct: 166 HNKEFKGKTLRCLLSE 181
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
+++ SQ + ++V NIP + T EQL E+ + G V + + +GK + +GF Y +
Sbjct: 273 SAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERS 331
Query: 62 TALSARRNLQGYEINGRQLRVDFAE 86
+AL A + + YEI+G+ L V A+
Sbjct: 332 SALKAVKETEKYEIDGQALEVVIAK 356
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ Q GP+ SF +V D+ETG KGYGFC Y+D A L
Sbjct: 180 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 239
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 240 NGLKMGDKTLTV 251
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ Q GP+ SF +V D+ETG KGYGFC Y+D A L
Sbjct: 300 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 359
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 360 NGLKMGDKTLTV 371
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 9 RC--------VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDE 60
RC +FVG I Y+ E+ L + + G V+ R+++DRE+G+ KG+GF Y
Sbjct: 36 RCFSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTV 95
Query: 61 ETALSARRNLQGYEINGRQLRVDFAE 86
E A SA + L G ++ GR++ V+FA
Sbjct: 96 EEASSAIQALDGQDLYGRRVGVNFAN 121
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 9 RC--------VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDE 60
RC +FVG I Y+ E+ L + + G V+ R+++DRE+G+ KG+GF Y
Sbjct: 36 RCFSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTV 95
Query: 61 ETALSARRNLQGYEINGRQLRVDFAE 86
E A SA + L G ++ GR++ V+FA
Sbjct: 96 EEASSAIQALDGQDLYGRRVGVNFAN 121
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ Q GP+ SF +V D+ETG KGYGFC Y+D A L
Sbjct: 137 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 196
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 197 NGLKMGDKTLTV 208
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ Q GP+ SF +V D+ETG KGYGFC Y+D A L
Sbjct: 285 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 344
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 345 NGLKMGDKTLTV 356
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VFVG IP+D TE +I + + G VV LV D+ TGK KG+ F Y+D+ + A NL
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 71 QGYEINGRQLRVD 83
G +++GR +RVD
Sbjct: 98 NGAQVSGRIIRVD 110
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+G + Y E L E G V+ R+++DRETG+ +G+GF + E A SA + L
Sbjct: 44 LFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 103
Query: 71 QGYEINGRQLRVDFA 85
G +++GR++RV++A
Sbjct: 104 DGQDLHGRRVRVNYA 118
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEY--KDE-ETALSAR 67
+FVGN+ + T E L + QE G VV R++ D ETGK +GYGF Y K E +TAL+
Sbjct: 206 LFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIM 265
Query: 68 RNLQGYEINGRQLRVDFAENDK 89
N+ E+ GR LRV A+ +
Sbjct: 266 DNV---ELEGRTLRVSLAQGKR 284
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++ GN+PY L + +E G ++ DR+TGK +G+ F E + +NL
Sbjct: 115 LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNL 174
Query: 71 QGYEINGRQLRVDFAENDK 89
G E GR LRV+F++ K
Sbjct: 175 DGKEFMGRTLRVNFSDKPK 193
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 7/89 (7%)
Query: 1 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDE 60
M+SS+ +F+G + Y+ ++ L + G VV R++ DRETG+ +G+GF + E
Sbjct: 33 MSSSK-----LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSE 87
Query: 61 ETALSARRNLQGYEINGRQLRVDFAENDK 89
E+A SA ++ G ++NGR +RV +A ND+
Sbjct: 88 ESATSA-LSMDGQDLNGRNIRVSYA-NDR 114
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + GP+ F LV DRETG KGY FC Y D A L
Sbjct: 362 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTDIACAAL 421
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 422 NGIKMGDKTLTV 433
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 470 NGIKMGDKTLTV 481
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 470 NGIKMGDKTLTV 481
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 472 NGIKMGDKTLTV 483
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 472 NGIKMGDKTLTV 483
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 472 NGIKMGDKTLTV 483
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 472 NGIKMGDKTLTV 483
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 470 NGIKMGDKTLTV 481
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S S ++ +FVGN+P+ QL EI + G V ++ D+ TG+ +G+GF
Sbjct: 79 SYSPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEV 138
Query: 64 LSARRNLQGYEINGRQLRVD-------------FAENDK-GNDRNREQGRGG 101
+A + L GY ++GR+LRV+ F EN + G DR R RGG
Sbjct: 139 EAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGG 190
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
SS +R V VGN+ + L + E G V+ +++ DRE+G+ +G+GF + +
Sbjct: 190 GSSDGDNR-VHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSAD 248
Query: 62 TALSARRNLQGYEINGRQLRV 82
SA R L G ++NGR +RV
Sbjct: 249 EVDSAIRTLDGADLNGRAIRV 269
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S S ++ +FVGN+P+ QL EI + G V ++ D+ TG+ +G+GF
Sbjct: 79 SYSPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEV 138
Query: 64 LSARRNLQGYEINGRQLRVD-------------FAENDK-GNDRNREQGRGG 101
+A + L GY ++GR+LRV+ F EN + G DR R RGG
Sbjct: 139 EAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGG 190
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
SS +R V VGN+ + L + E G V+ +++ DRE+G+ +G+GF + +
Sbjct: 190 GSSDGDNR-VHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSAD 248
Query: 62 TALSARRNLQGYEINGRQLRV 82
SA R L G ++NGR +RV
Sbjct: 249 EVDSAIRTLDGADLNGRAIRV 269
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
S H VFVG++ + T+ L R++ D +TG+ KGYGF ++D + A S
Sbjct: 126 SGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQS 185
Query: 66 ARRNLQGYEINGRQLRVDFAENDKGNDRNREQ 97
A ++ G + RQ+R ++A G N E+
Sbjct: 186 AINDMTGKWLGNRQIRCNWATKGAGGSSNEEK 217
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
S R V+VGNI + T++ L E+ Q GP+ +L+ ++ YGF +Y D +A
Sbjct: 41 SACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKS----SYGFVDYHDRASAAL 96
Query: 66 ARRNLQGYEINGRQLRVDFA 85
A L G ++ G+ L+V++A
Sbjct: 97 AIMTLHGRQLYGQALKVNWA 116
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
S H VFVG++ + T+ L R++ D +TG+ KGYGF ++D + A S
Sbjct: 142 SGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQS 201
Query: 66 ARRNLQGYEINGRQLRVDFAENDKGNDRNREQ 97
A ++ G + RQ+R ++A G N E+
Sbjct: 202 AINDMTGKWLGNRQIRCNWATKGAGGSSNEEK 233
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
S R V+VGNI + T++ L E+ Q GP+ +L+ ++ YGF +Y D +A
Sbjct: 57 SACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKS----SYGFVDYHDRASAAL 112
Query: 66 ARRNLQGYEINGRQLRVDFA 85
A L G ++ G+ L+V++A
Sbjct: 113 AIMTLHGRQLYGQALKVNWA 132
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
S H VFVG++ + T+ L R++ D +TG+ KGYGF ++D + A S
Sbjct: 142 SGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQS 201
Query: 66 ARRNLQGYEINGRQLRVDFAENDKGNDRNREQ 97
A ++ G + RQ+R ++A G N E+
Sbjct: 202 AINDMTGKWLGNRQIRCNWATKGAGGSSNEEK 233
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
S R V+VGNI + T++ L E+ Q GP+ +L+ ++ YGF +Y D +A
Sbjct: 57 SACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKS----SYGFVDYHDRASAAL 112
Query: 66 ARRNLQGYEINGRQLRVDFA 85
A L G ++ G+ L+V++A
Sbjct: 113 AIMTLHGRQLYGQALKVNWA 132
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 1 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDE 60
MAS+ ++RC FVG + + E L + + G ++ +++ DRETG+ +G+GF + DE
Sbjct: 1 MASADVEYRC-FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADE 59
Query: 61 ETALSARRNLQGYEINGRQLRVDFAEN 87
++ A + G +++GR + V+ A++
Sbjct: 60 KSMRDAIEGMNGQDMDGRNITVNEAQS 86
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+G + Y E L E G V+ ++++DR+TG+ +G+GF + E A SA + +
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 71 QGYEINGRQLRVDFA 85
E++GR +RV++A
Sbjct: 102 DNKELDGRTVRVNYA 116
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+G + Y E L E G V+ ++++DR+TG+ +G+GF + E A SA + +
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 71 QGYEINGRQLRVDFA 85
E++GR +RV++A
Sbjct: 102 DNKELDGRTVRVNYA 116
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+VGN+P+D L ++ E G V S ++V DRETG+ +G+GF +E A L
Sbjct: 218 AYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAAL 277
Query: 71 QGYEINGRQLRVDFAE 86
G NGR +RV+ AE
Sbjct: 278 DGQSFNGRAIRVNVAE 293
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
S+ +FVGN+P+D E+L ++ ++ G V ++ +R+T + +G+GF E
Sbjct: 119 SEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVER 178
Query: 66 ARRNLQGYEINGRQLRVDFA 85
A G+E++GR L V+ A
Sbjct: 179 AVNKFSGFELDGRLLTVNKA 198
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++V N+ ++ +L ++ E G +VS R+V DRETG+ +G+GF DE A L
Sbjct: 208 IYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAAL 267
Query: 71 QGYEINGRQLRVDFAEN 87
G + GR +RV AE+
Sbjct: 268 DGQSLEGRTIRVSVAED 284
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVGN P+D E+L + + G V ++ +R+T +G+GF E A SA
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 71 QGYEINGRQLRVDFA 85
GY+ NGR L V+ A
Sbjct: 171 NGYDYNGRSLVVNKA 185
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
++ ++Q +VGN+ +EE L E+ + GPVV+ + DR T + +GYGF E++ EE
Sbjct: 18 SAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEE 77
Query: 62 TALSARRNLQGYEINGRQLRVDFAENDK 89
A A + L ++ G+ +RV+ A DK
Sbjct: 78 DADYAIKVLNMIKLYGKPIRVNKASQDK 105
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V+VG IP DA E L E C+ +G VV R++ ++ + KG+ F Y++ E A A L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 71 QGYEINGRQLRV 82
E GR+++
Sbjct: 172 NNTEFKGRKIKC 183
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V+VG IP DA E L E C+ +G VV R++ ++ + KG+ F Y++ E A A L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 71 QGYEINGRQLRV 82
E GR+++
Sbjct: 172 NNTEFKGRKIKC 183
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V+VG IP DA E L E C+ +G VV R++ ++ + KG+ F Y++ E A A L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 71 QGYEINGRQLRV 82
E GR+++
Sbjct: 172 NNTEFKGRKIKC 183
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V+VG IP DA E L E C+ +G VV R++ ++ + KG+ F Y++ E A A L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 71 QGYEINGRQLRV 82
E GR+++
Sbjct: 172 NNTEFKGRKIKC 183
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VG I Y + L E G V+ R++IDRE G+ KG+GF + E A +A + +
Sbjct: 42 LYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQAM 101
Query: 71 QGYEINGRQLRVDFAE 86
E++GR +RV++A+
Sbjct: 102 DNQELHGRTVRVNYAQ 117
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
+Q R +FVGN+P+ + QL ++ E G VVS ++ D T + +G+ F + E A
Sbjct: 105 TQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEE 164
Query: 66 ARRNLQGYEINGRQLRVDFAE 86
A R G + GR ++V+F E
Sbjct: 165 AIRMFDGTTVGGRAIKVNFPE 185
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEY---KDEETALSAR 67
++ GN+ +D T + L + + ++S ++V +R GK +GYGF + +D E ALSA
Sbjct: 209 IYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA- 267
Query: 68 RNLQGYEINGRQLRVDFAENDK 89
+ G E+ GR LR+ A +++
Sbjct: 268 --MNGVEVQGRPLRLKLAVDNR 287
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
+Q R +FVGN+P+ + QL ++ E G VVS ++ D T + +G+ F + E A
Sbjct: 105 TQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEE 164
Query: 66 ARRNLQGYEINGRQLRVDFAE 86
A R G + GR ++V+F E
Sbjct: 165 AIRMFDGTTVGGRAIKVNFPE 185
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEY---KDEETALSAR 67
++ GN+ +D T + L + + ++S ++V +R GK +GYGF + +D E ALSA
Sbjct: 209 IYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA- 267
Query: 68 RNLQGYEINGRQLRVDFAENDK 89
+ G E+ GR LR+ A +++
Sbjct: 268 --MNGVEVQGRPLRLKLAVDNR 287
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 13 VGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQG 72
V + Y E L E G V+ R+++DRETG+ +G+GF + E A SA + L G
Sbjct: 54 VAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDG 113
Query: 73 YEINGRQLRVDFA 85
+++GR++RV++A
Sbjct: 114 QDLHGRRVRVNYA 126
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 45/75 (60%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+ + Y+ E L + ++ G ++ +++ + TG+ KGYGF + E A +AR+ L
Sbjct: 35 LFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKEL 94
Query: 71 QGYEINGRQLRVDFA 85
G ++GR++RV +A
Sbjct: 95 HGQIVDGRRIRVGYA 109
>Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC
| chr8:20148291-20144393 | 20130731
Length = 303
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S+ R V+VGN+P D E ++ ++ + G + L + +P GY F E++D + A
Sbjct: 2 SRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKV---PPRPPGYAFVEFEDVQDA 58
Query: 64 LSARRNLQGYEINGRQLRVDFAENDKGNDRNREQ 97
A R GY+ +G +LRV+ A +GN +R++
Sbjct: 59 EDAIRGRDGYDFDGHRLRVEAAHGGRGNSSSRDR 92
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 1 MASSQSQHRCVFVGNIPYDATEEQLIE-ICQEVGPVVSFRLVIDRETGKPKGYGFCEYKD 59
M SS ++RC FVG + + AT+ Q +E + G + +++ DRETG+ +G+GF + +
Sbjct: 1 MGSSDVEYRC-FVGGLAW-ATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAE 58
Query: 60 EETALSARRNLQGYEINGRQLRVDFAE 86
E++ A + G +I+GR + V+ A+
Sbjct: 59 EKSMRDAIEEMNGQDIDGRNITVNEAQ 85
>Medtr8g104260.1 | hydroxyproline-rich glycoprotein-like protein |
HC | chr8:43905814-43900142 | 20130731
Length = 395
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 170 LTLHLAKMSRFQLIEVISELKGMATQNNDLARQLLLSRPQLPKALFQAQIMLQMV 224
L+ +LA MS+ QL +++S++K + QN A+Q+L+ P L KALFQAQIML MV
Sbjct: 11 LSANLAGMSKNQLYDIMSQMKNLIEQNQQQAKQILIQNPMLTKALFQAQIMLGMV 65
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG + + E+ L + G V R+V D+++G+ +G+GF + +E+ A SA+ +
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 71 QGYEINGRQLRVDFA 85
G + GR LR++FA
Sbjct: 98 DGKALLGRPLRINFA 112
>Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:44331530-44321717 | 20130731
Length = 401
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S+ R V+VGN+P D E ++ ++ + G + L + +P GY F E++D + A
Sbjct: 103 SRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKV---PPRPPGYAFVEFEDVQDA 159
Query: 64 LSARRNLQGYEINGRQLRVDFAENDKGNDRNREQ 97
A R GY+ +G +LRV+ A +GN +R++
Sbjct: 160 EDAIRGRDGYDFDGHRLRVEAAHGGRGNSSSRDR 193
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V++G IP++ +E+ L CQ VG V R++ +E KGY F +K +E A A + L
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALKEL 159
Query: 71 QGYEINGRQLRV 82
E GR+++
Sbjct: 160 NNSEFKGRKIKC 171
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 7 QHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 66
Q + V+V N+P + T+ +L E+ + G + L + + YGF + D +A+ A
Sbjct: 270 QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKA 329
Query: 67 RRNLQGYEINGRQLRVDFAE 86
+N + YEING+ L A+
Sbjct: 330 LKNTEKYEINGQTLECSLAK 349
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V++G IP++ +E+ L CQ VG V R++ +E KGY F +K +E A A + L
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALKEL 159
Query: 71 QGYEINGRQLRV 82
E GR+++
Sbjct: 160 NNSEFKGRKIKC 171
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 7 QHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 66
Q + V+V N+P + T+ +L E+ + G + L + + YGF + D +A+ A
Sbjct: 270 QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKA 329
Query: 67 RRNLQGYEINGRQLRVDFAE 86
+N + YEING+ L A+
Sbjct: 330 LKNTEKYEINGQTLECSLAK 349
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V++G IP++ +E+ L CQ VG V R++ +E KGY F +K +E A A + L
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALKEL 159
Query: 71 QGYEINGRQLRV 82
E GR+++
Sbjct: 160 NNSEFKGRKIKC 171
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 7 QHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 66
Q + V+V N+P + T+ +L E+ + G + L + + YGF + D +A+ A
Sbjct: 270 QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKA 329
Query: 67 RRNLQGYEINGRQLRVDFAE 86
+N + YEING+ L A+
Sbjct: 330 LKNTEKYEINGQTLECSLAK 349
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V++G IP++ +E+ L CQ VG V R++ +E KGY F +K +E A A + L
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALKEL 159
Query: 71 QGYEINGRQLRV 82
E GR+++
Sbjct: 160 NNSEFKGRKIKC 171
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 7 QHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 66
Q + V+V N+P + T+ +L E+ + G + L + + YGF + D +A+ A
Sbjct: 270 QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKA 329
Query: 67 RRNLQGYEINGRQLRVDFAE 86
+N + YEING+ L A+
Sbjct: 330 LKNTEKYEINGQTLECSLAK 349
>Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:46405226-46398545 | 20130731
Length = 292
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 16/106 (15%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S+ R ++VGN+P D ++ ++ + GP+V L I +P GY F E++D A
Sbjct: 2 SRRSSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKI---PPRPPGYAFVEFEDARDA 58
Query: 64 LSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTANVD 109
A R GY+ +G +LRV+ A GG G +++VD
Sbjct: 59 EDAIRYRDGYKFDGFRLRVELAH-------------GGRGYSSSVD 91
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+++G +P ++ LI++ Q+ G +V +++ DR TG KGYGF +Y D A +A +
Sbjct: 453 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAM 512
Query: 71 QGYEINGRQLRVDFA 85
GY + GR + V A
Sbjct: 513 NGYRLEGRTIAVRVA 527
>Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:46405206-46401029 | 20130731
Length = 252
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 16/106 (15%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S+ R ++VGN+P D ++ ++ + GP+V L I +P GY F E++D A
Sbjct: 2 SRRSSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKI---PPRPPGYAFVEFEDARDA 58
Query: 64 LSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTANVD 109
A R GY+ +G +LRV+ A GG G +++VD
Sbjct: 59 EDAIRYRDGYKFDGFRLRVELAH-------------GGRGYSSSVD 91
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVGN P+D E+L + + G V ++ +R+T +G+GF E A SA
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 71 QGYEINGRQLRVDFA 85
GY+ NGR L V+ A
Sbjct: 171 NGYDYNGRSLVVNKA 185
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQ-EVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+FVG++ D ++ L E+ + V ++VIDR TG+ KGYGF + DE + A
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 70 LQGYEINGRQLRVDFAEN 87
+QG + R +R+ A N
Sbjct: 229 MQGVLCSTRPMRIGPASN 246
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 7 QHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 66
++RC FVG + + E L + + G +V +++ DRETG+ +G+GF + +E++ A
Sbjct: 5 EYRC-FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDA 63
Query: 67 RRNLQGYEINGRQLRVDFAEN 87
+ G +++GR + V+ A++
Sbjct: 64 IEAMNGQDLDGRNITVNQAQS 84
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 9 RCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 68
R ++VGNIP + ++L +I QE G V ++ D+ + + + + F K E A +A
Sbjct: 60 RKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAE 119
Query: 69 NLQGYEINGRQLRVDFAE 86
L G EI GR+++V+ E
Sbjct: 120 KLNGTEIGGREIKVNITE 137
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 7 QHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 66
++RC FVG + + E L + + G +V +++ DRETG+ +G+GF + +E++ A
Sbjct: 5 EYRC-FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDA 63
Query: 67 RRNLQGYEINGRQLRVDFAE 86
+ G +++GR + V+ A+
Sbjct: 64 IEAMNGQDLDGRNITVNQAQ 83
>Medtr4g118630.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:49138254-49142925 | 20130731
Length = 314
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+ V N+P DA E L + GPV L + TG+P+G+GF +Y+ E A A++ L
Sbjct: 50 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQQL 109
Query: 71 QGYEINGRQLRVDFAENDK 89
I GR++R+ FAE ++
Sbjct: 110 NHTIIGGREIRIVFAEENR 128
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VF+ N+ + L + GPV+S ++ +D G+ KGYGF ++ +EE A SA + L
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 71 QGYEINGRQLRVDF 84
G IN +Q+ V F
Sbjct: 179 DGMLINDKQVYVGF 192
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VF+ N+ + L + GPV+S ++ +D G+ KGYGF ++ +EE A SA + L
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 71 QGYEINGRQLRVDF 84
G IN +Q+ V F
Sbjct: 179 DGMLINDKQVYVGF 192
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
++ +FV + Y+ TE ++ + G + RLV D E+ KP+GY F EY +A
Sbjct: 134 YKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAY 193
Query: 68 RNLQGYEINGRQLRVD 83
+ G +I GR++ VD
Sbjct: 194 KQADGRKIEGRRVLVD 209
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
++ +FV + Y+ TE ++ + G + RLV D E+ KP+GY F EY +A
Sbjct: 134 YKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAY 193
Query: 68 RNLQGYEINGRQLRVD 83
+ G +I GR++ VD
Sbjct: 194 KQADGRKIEGRRVLVD 209
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
++ +FV + Y+ TE ++ + G + RLV D E+ KP+GY F EY +A
Sbjct: 134 YKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAY 193
Query: 68 RNLQGYEINGRQLRVD 83
+ G +I GR++ VD
Sbjct: 194 KQADGRKIEGRRVLVD 209
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
++ +FV + Y+ TE ++ + G + RLV D E+ KP+GY F EY +A
Sbjct: 134 YKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAY 193
Query: 68 RNLQGYEINGRQLRVD 83
+ G +I GR++ VD
Sbjct: 194 KQADGRKIEGRRVLVD 209
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG + + TE+ L + G VV +++ DR + K KGYGF + ++ A A +
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 71 QGYEINGRQLRVDFAENDKGNDRNREQGRGGP 102
+NGR + VD+A+ D RG P
Sbjct: 94 NEKALNGRVVFVDYAKPDTKRSMGMPIARGPP 125
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 66
+F+G + Y+ ++ L + G VV R++ DRETG+ +G+GF + EE+A SA
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FV + + T++QL + G + L+ D+ T +PKG+GF YK E A AR+ L
Sbjct: 9 LFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKAL 68
Query: 71 QGYEINGRQLRVDFAE 86
G ++GR + V+ A+
Sbjct: 69 NGRIVDGRLIFVEHAK 84
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 49/87 (56%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
++ + ++ ++VG++ + + QL ++ ++ PV+S R+ D+ T GYG+ Y +
Sbjct: 18 SAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNAR 77
Query: 62 TALSARRNLQGYEINGRQLRVDFAEND 88
A +A NL +NG+ +R+ F+ D
Sbjct: 78 DAANAMENLNYVPLNGKPIRIMFSHRD 104
>Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:23814162-23811233 | 20130731
Length = 220
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+ V N+ D E L + + GPV L D TG+P+G+GF ++ D A A+ ++
Sbjct: 45 LLVRNLAKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADAKYHM 104
Query: 71 QGYEINGRQLRVDFAENDKGND---RNREQGR 99
G + GR+L V FAE ++ R RE+GR
Sbjct: 105 DGQVLLGRELTVVFAEENRKKPQEMRARERGR 136
>Medtr2g090655.1 | nuclear cap-binding protein subunit 2 | HC |
chr2:38808070-38813158 | 20130731
Length = 259
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V+VGN+ + TEEQ+ E+ G + + +D+ T P G+ F Y E A + +
Sbjct: 36 VYVGNMSFYTTEEQIYELFTRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYI 95
Query: 71 QGYEINGRQLRVDFAENDKGNDRNREQGRGGPG 103
G ++ R +RVDF D G R+ GRG G
Sbjct: 96 SGTILDDRPIRVDF---DWGFQDGRQWGRGRSG 125
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+ +IP + +++L Q G V+S ++ +D+ TG K +GF Y E A SA +
Sbjct: 351 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 410
Query: 71 QGYEINGRQLRVDFAENDK 89
G ++ G++L+V ++K
Sbjct: 411 NGCQLGGKKLKVQHKRDNK 429
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+ +IP + +++L Q G V+S ++ +D+ TG K +GF Y E A SA +
Sbjct: 350 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 409
Query: 71 QGYEINGRQLRVDFAENDK 89
G ++ G++L+V ++K
Sbjct: 410 NGCQLGGKKLKVQHKRDNK 428
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 9 RCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 68
R ++VGN+ ++ TE QL EI + G V +L +D ETG KG+GF ++ E A +A+
Sbjct: 317 RKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQS 376
Query: 69 NLQGYEINGRQLRV 82
EI GR ++V
Sbjct: 377 LNGKLEIAGRTIKV 390
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VFVG + DATE+ L ++ EVG V RL+++ +T K KG+ F +++ E A A L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 71 QGYEINGRQLRV 82
+ ING+Q V
Sbjct: 277 KNPVINGKQCGV 288
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VFVG + DATE+ L ++ EVG V RL+++ +T K KG+ F +++ E A A L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 71 QGYEINGRQLRV 82
+ ING+Q V
Sbjct: 276 KNPVINGKQCGV 287
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VFVG + DATE+ L ++ EVG V RL+++ +T K KG+ F +++ E A A L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 71 QGYEINGRQLRV 82
+ ING+Q V
Sbjct: 276 KNPVINGKQCGV 287
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VFVG + DATE+ L ++ EVG V RL+++ +T K KG+ F +++ E A A L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 71 QGYEINGRQLRV 82
+ ING+Q V
Sbjct: 277 KNPVINGKQCGV 288
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 9 RCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 68
R ++VGN+ ++ TE QL EI + G V +L +D ETG KG+GF ++ E A +A+
Sbjct: 317 RKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQS 376
Query: 69 NLQGYEINGRQLRV 82
EI GR ++V
Sbjct: 377 LNGKLEIAGRTIKV 390
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 9 RCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 68
R ++VGN+ ++ TE QL EI + G V +L +D ETG KG+GF ++ E A +A+
Sbjct: 317 RKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQS 376
Query: 69 NLQGYEINGRQLRV 82
EI GR ++V
Sbjct: 377 LNGKLEIAGRTIKV 390
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQE-VGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+FV N PY+A + + E G VVS ++ +P GYGF YK ++ A A
Sbjct: 184 LFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAE 243
Query: 70 LQGYEINGRQLRV 82
QG GR LRV
Sbjct: 244 FQGKNFMGRPLRV 256
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQE-VGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+FV N PY+A + + E G VVS ++ +P GYGF YK ++ A A
Sbjct: 184 LFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAE 243
Query: 70 LQGYEINGRQLRV 82
QG GR LRV
Sbjct: 244 FQGKNFMGRPLRV 256
>Medtr1g083400.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr1:37124801-37119597 | 20130731
Length = 290
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 9 RCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 68
R ++VGN+P D ++ ++ + GP+V L I KP GY F E++D A A
Sbjct: 38 RTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKI---PPKPPGYAFVEFEDARDAQDAIY 94
Query: 69 NLQGYEINGRQLRVDFAENDKGN----DR-NREQGRGGP-GMTANVDTQ 111
GY+ +G +L V+ A +G+ DR +R GR G G++ D +
Sbjct: 95 YRDGYDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYR 143
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVV-SFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+FVG++ D T+ L+E + P V + ++V D TG+ KGYGF + D+ A
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 70 LQGYEINGRQLRV 82
+ G + R +R+
Sbjct: 249 MNGVFCSSRAMRI 261
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 11 VFVGNIPYDATEEQLIE-ICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
VFVG++ D T+ L E + + ++VID TG+ KGYGF + DE A
Sbjct: 216 VFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTE 275
Query: 70 LQGYEINGRQLRVDFA 85
+ G + R +RV A
Sbjct: 276 MNGVYCSSRPMRVGVA 291
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVV-SFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+FVG++ D T+ L+E + P V + ++V D TG+ KGYGF + D+ A
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 70 LQGYEINGRQLRVDFA 85
+ G + R +R+ A
Sbjct: 249 MNGVFCSSRAMRIGAA 264
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FV + + TEE+L E + G VV +V+++ + KG+G+ + +EE A A+ +
Sbjct: 34 IFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGM 93
Query: 71 QGYEINGRQLRVD 83
G ++GR L VD
Sbjct: 94 NGKILHGRVLYVD 106
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++V + + TEE L + G +V LV+D+ +P+G+ F Y EE + A +
Sbjct: 97 LYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEGM 156
Query: 71 QGYEINGRQLRVDFAE 86
G ++GR + V+ A+
Sbjct: 157 HGKFLDGRVIFVEVAK 172