Miyakogusa Predicted Gene

Lj5g3v1869810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1869810.1 Non Characterized Hit- tr|I1NH95|I1NH95_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,77.51,0,no
description,NULL; seg,NULL; TRNA NUCLEOTIDYLTRANSFERASE,NULL;
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A),CUFF.56091.1
         (576 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g096870.1 | tRNA nucleotidyltransferase | HC | chr1:436507...   790   0.0  
Medtr1g096810.1 | tRNA nucleotidyltransferase | HC | chr1:436195...   655   0.0  
Medtr5g023810.1 | tRNA nucleotidyltransferase/poly(A) polymerase...    62   1e-09
Medtr3g498785.1 | tRNA nucleotidyltransferase/poly(A) polymerase...    54   4e-07
Medtr3g498785.2 | tRNA nucleotidyltransferase/poly(A) polymerase...    54   5e-07

>Medtr1g096870.1 | tRNA nucleotidyltransferase | HC |
           chr1:43650768-43643846 | 20130731
          Length = 565

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/562 (72%), Positives = 444/562 (79%), Gaps = 20/562 (3%)

Query: 19  SFAHTPRTLLL---QP-PAKTLVLLRAAPTPSFRCSACAPMSTHLHVRDGIEPSLKEEEI 74
           +F+ TP   LL    P PAKTL+L +   TPSFR SACAPMST  HVRD IE +  E+ I
Sbjct: 20  AFSQTPTVHLLPLHAPRPAKTLLLTK---TPSFRTSACAPMSTQHHVRDTIELTTIEKSI 76

Query: 75  FDRLRKTLSHFHLDTQLRVAGGWVRDKLLGKECKDIDIAIDNMMGTEFADKVREYSLSFG 134
           FDRL  TL HF L TQLR+AGGWVRDKLLGK+C DIDIA+D+MMGTEF +KVR+Y L   
Sbjct: 77  FDRLLATLRHFQLQTQLRIAGGWVRDKLLGKDCYDIDIALDDMMGTEFVEKVRDYLLFI- 135

Query: 135 KEEDVKGVHVIESNPDQSKHLETARMSLFGQEIDFVNLRSEEYTENSRIPSKQSFGTPEE 194
            +ED   V VIESNPDQSKHLETARM L    IDFVNLRSEEY ENSRIPSKQ+FGT E+
Sbjct: 136 -KEDAPSVCVIESNPDQSKHLETARMRLSDMWIDFVNLRSEEYAENSRIPSKQTFGTAEQ 194

Query: 195 DAYRRDLTINSLFYNINTKLVEDFTKRGISDLKSGKIVTPLPPKSTFLDDPLRVLRAIRF 254
           DAYRRDLTINSLFYNINT  VED T RGISDLKSGKIVTPLPPK+TFLDDPLRVLRAIRF
Sbjct: 195 DAYRRDLTINSLFYNINTGAVEDLTNRGISDLKSGKIVTPLPPKATFLDDPLRVLRAIRF 254

Query: 255 CARFDFTLDEXXXXXXXXXXXXXXXXXXISRERIGTEIDLMISGNQPVKAMTYISELTIF 314
            ARFDFTLDE                  ISRER+GTE+DLM+SGNQPVKAMTYI ELT+F
Sbjct: 255 GARFDFTLDEDLKGAAACDDVKNALAAKISRERVGTEVDLMMSGNQPVKAMTYICELTLF 314

Query: 315 WIVFSLPPESVPAIPDGCESLCISYLDTAWNLIRLLGESFFTVKKEAEQKRLALYAALFL 374
           W VF+LP E  P I DGCE LCISYLD A NLI LLGES FT    AEQ+RL+LYAALFL
Sbjct: 315 WTVFTLPAEHEPVISDGCERLCISYLDNASNLIHLLGESTFT----AEQRRLSLYAALFL 370

Query: 375 PLRNTTYREKKNKKIPVVNHIIRESLKRKAKDAETVLDLYRASYKLSLLIPYLVSGEDIQ 434
           PLRNTTY EKK KK+PVVNHIIRESLKRK KDAETVLDL+R SYK   LIPYL SGEDIQ
Sbjct: 371 PLRNTTYSEKKAKKVPVVNHIIRESLKRKTKDAETVLDLHRLSYKFLSLIPYLASGEDIQ 430

Query: 435 VIDHDWMRHVTDVPVSSRVRVLTGFLLREIKHYWRVALLMSTIVHPIDINDTEDEYSQLC 494
             + DWMR   DVPVSSR RV+TGFLLRE+K +WRVALL+S I+HPID  D      QL 
Sbjct: 431 ASNLDWMRDF-DVPVSSRARVITGFLLRELKDFWRVALLISIILHPIDSED------QLG 483

Query: 495 KRRDLFSTVENSIIKLGLDEVWDAKQLINGKDVMNTLQVKGGPLVKEWLDKAMAWQLAYP 554
           K+RDLF+ VENSI KLGL++VWD K LINGKDVM  LQ+KGGPLVKEWLDK MAWQLA P
Sbjct: 484 KQRDLFNAVENSITKLGLEKVWDVKPLINGKDVMKVLQLKGGPLVKEWLDKTMAWQLANP 543

Query: 555 SGTAEECIEWLTEANSKRVKLE 576
           SGTAE+CIEWL EANSKRVKLE
Sbjct: 544 SGTAEKCIEWLEEANSKRVKLE 565


>Medtr1g096810.1 | tRNA nucleotidyltransferase | HC |
           chr1:43619585-43613134 | 20130731
          Length = 550

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/562 (63%), Positives = 405/562 (72%), Gaps = 52/562 (9%)

Query: 55  MSTHLH-VRDGIEPSLKEEEIFDRLRKTLSHFHLDTQLRVAGGWVRDKLLGKECKDIDIA 113
           MST  H VRD IE +  E++IFDRL  T  HF L T +RVAGGWVRDKLLGK+  DIDIA
Sbjct: 1   MSTQTHHVRDTIELTEVEQKIFDRLLATQLHFKLKTDIRVAGGWVRDKLLGKDSNDIDIA 60

Query: 114 IDNMMGTEFADKVREYSLSFGKEEDVKGVHVIESNPDQSKHLETARMSLFGQEIDFVNLR 173
           +D+MMG EFADKVREYSL    +ED   V VIES+ ++SKHLETA M LFG  IDFVNLR
Sbjct: 61  LDHMMGKEFADKVREYSLYL--KEDAPSVCVIESDAEKSKHLETATMRLFGISIDFVNLR 118

Query: 174 SEEYTENSRIPSKQSFGTPEEDAYRRDLTINSLFYNINTKLVEDFTKRGISDLKSGKIVT 233
           SE+Y +   IP +Q+FGT EEDAYRRDLTINSLFYNIN   VEDFTKRGISDLKSGKIVT
Sbjct: 119 SEKYKKECNIP-EQTFGTAEEDAYRRDLTINSLFYNINNGAVEDFTKRGISDLKSGKIVT 177

Query: 234 PLPPKSTFLDDPLRVLRAI---------------------------------RFCAR-FD 259
           PLPPK+TFLDDPLRVLRAI                                 R C+R  D
Sbjct: 178 PLPPKATFLDDPLRVLRAIRMVGAILDFTLDEDLKGAAACDDVKNDLTVKVIRVCSRKVD 237

Query: 260 FTLD-----EXXXXXXXXXXXXXXXXXXISRERIGTEIDLMISGNQPVKAMTYISELTIF 314
             +      +                  IS+ERIG E+DLMI+GNQPVKAMTYI ELT+F
Sbjct: 238 LMISGNQPVKAMTYICGLTLFQTKEVYKISKERIGKEVDLMITGNQPVKAMTYICELTLF 297

Query: 315 WIVFSLPPESVPAIPDGCESLCISYLDTAWNLIRLLGESFFTVKKEAEQKRLALYAALFL 374
             VF+LP   +  I D CE LCISYLD A  LI LLGES FTV    EQ+RLALYAALFL
Sbjct: 298 QTVFTLPEHEL-VISDECERLCISYLDNASKLIHLLGESTFTV----EQRRLALYAALFL 352

Query: 375 PLRNTTYREKKNKKIPVVNHIIRESLKRKAKDAETVLDLYRASYKLSLLIPYLVSGEDIQ 434
           PLRN TY+ KK KKIPVVN II ESLK KAKDAETVLDL+R SY+   LIPYL SGED+Q
Sbjct: 353 PLRNNTYK-KKAKKIPVVNRIILESLKFKAKDAETVLDLHRLSYQFLSLIPYLASGEDMQ 411

Query: 435 VIDHDWMRHVTDVPVSSRVRVLTGFLLREIKHYWRVALLMSTIVHPIDINDTEDEYSQLC 494
             + DWM  + DVPVSSR RV+TGFLL E++ +WRV LL+S ++HPID   TE+E+SQL 
Sbjct: 412 ASNLDWMGDLIDVPVSSRARVITGFLLIELRDFWRVVLLISILLHPID---TENEHSQLE 468

Query: 495 KRRDLFSTVENSIIKLGLDEVWDAKQLINGKDVMNTLQVKGGPLVKEWLDKAMAWQLAYP 554
           KRR LF+ VENSI+KLGL++VWD K LINGKDVM  LQ+KGGPLVKEWLDK MAWQLA P
Sbjct: 469 KRRYLFNAVENSIMKLGLEKVWDVKPLINGKDVMKVLQLKGGPLVKEWLDKTMAWQLANP 528

Query: 555 SGTAEECIEWLTEANSKRVKLE 576
           SGT+++CIEWL EANSKRVKLE
Sbjct: 529 SGTSKKCIEWLEEANSKRVKLE 550


>Medtr5g023810.1 | tRNA nucleotidyltransferase/poly(A) polymerase |
           HC | chr5:9485108-9478063 | 20130731
          Length = 713

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 34/196 (17%)

Query: 83  SHFHL----DTQLR--VAGGWVRDKLLGKECKDIDIAIDNMMGTEFADKVREYSLSFGKE 136
           SHF L    D  L+  + GG VRD +L +  KD D+       T    +V+     FG  
Sbjct: 78  SHFVLKLLQDKGLKSYLVGGCVRDLVLNRTPKDFDVVT-----TAKLIEVKRLFRRFGHR 132

Query: 137 EDVKGVHVIESNPDQSKHLETARMSLFGQEIDFVNLRSEEYTENSRIPSKQSFGTPE--- 193
            DV G           +      + + G  I+  +  +E  T  +      S   P+   
Sbjct: 133 ADVVG-----------RRFPVCLVHMQGSVIEVTSFHTESETPKAMKNVLHSL-MPKCKN 180

Query: 194 -------EDAYRRDLTINSLFYNINTKLVEDFTKRGISDLKSGKIVTPLPPKSTFLDDPL 246
                  +++ RRD TINSLFY+     + D+   G++DL+S K+ T +P + +F +DP 
Sbjct: 181 KENRFLCKNSLRRDFTINSLFYDPFANKIYDYA-NGMADLRSLKLETVIPAQISFKEDPG 239

Query: 247 RVLRAIRFCARFDFTL 262
           R+LR  R  AR   +L
Sbjct: 240 RILRGFRIAARLGLSL 255


>Medtr3g498785.1 | tRNA nucleotidyltransferase/poly(A) polymerase |
           HC | chr3:45158396-45153028 | 20130731
          Length = 552

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 30/180 (16%)

Query: 93  VAGGWVRDKLLGKECKDIDIAIDNMMGTEFADKVREYSLS--FGKEEDVKGVHVIESNPD 150
           + GG VRD +L +  KD DI    +   E  + ++ +S     GK   +  VH+ ++  +
Sbjct: 117 LVGGCVRDLILKQTPKDFDI----ITSAELKEVMKVFSWCKIVGKRFPICHVHMDDTIVE 172

Query: 151 QSKHLETARMSLFGQEIDFVNLRSEEYTENSRIPSKQSFGTPEEDAYR------RDLTIN 204
            S    TAR             +  E + +++ P+     + E+D  R      RD TIN
Sbjct: 173 VSS-FNTAR-----------GKKGVESSHHTKAPN-----SCEKDLLRWKNCLNRDFTIN 215

Query: 205 SLFYNINTKLVEDFTKRGISDLKSGKIVTPLPPKSTFLDDPLRVLRAIRFCARFDFTLDE 264
            L  +   ++V D+   GI D++  K+ T  P   +F +D  R+LRAIR  AR  F++ +
Sbjct: 216 GLILDPYERVVYDYMG-GIEDIRKAKVRTINPADISFREDCARILRAIRIAARLGFSISK 274


>Medtr3g498785.2 | tRNA nucleotidyltransferase/poly(A) polymerase |
           HC | chr3:45158441-45152448 | 20130731
          Length = 530

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 30/180 (16%)

Query: 93  VAGGWVRDKLLGKECKDIDIAIDNMMGTEFADKVREYSLS--FGKEEDVKGVHVIESNPD 150
           + GG VRD +L +  KD DI    +   E  + ++ +S     GK   +  VH+ ++  +
Sbjct: 95  LVGGCVRDLILKQTPKDFDI----ITSAELKEVMKVFSWCKIVGKRFPICHVHMDDTIVE 150

Query: 151 QSKHLETARMSLFGQEIDFVNLRSEEYTENSRIPSKQSFGTPEEDAYR------RDLTIN 204
            S    TAR             +  E + +++ P+     + E+D  R      RD TIN
Sbjct: 151 VSS-FNTAR-----------GKKGVESSHHTKAPN-----SCEKDLLRWKNCLNRDFTIN 193

Query: 205 SLFYNINTKLVEDFTKRGISDLKSGKIVTPLPPKSTFLDDPLRVLRAIRFCARFDFTLDE 264
            L  +   ++V D+   GI D++  K+ T  P   +F +D  R+LRAIR  AR  F++ +
Sbjct: 194 GLILDPYERVVYDYMG-GIEDIRKAKVRTINPADISFREDCARILRAIRIAARLGFSISK 252