Miyakogusa Predicted Gene

Lj5g3v1868770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1868770.1 Non Characterized Hit- tr|B9R6W1|B9R6W1_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,30.43,0.03,seg,NULL; DUF688,Protein of unknown function
DUF688,CUFF.56085.1
         (209 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g096610.1 | DUF688 family protein | HC | chr1:43532780-435...   187   7e-48

>Medtr1g096610.1 | DUF688 family protein | HC |
           chr1:43532780-43534054 | 20130731
          Length = 211

 Score =  187 bits (474), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 110/214 (51%), Positives = 124/214 (57%), Gaps = 8/214 (3%)

Query: 1   MDSSETLSQHAKVVTKQCDIFPAGKYXXXXXXXXXXXXXXXXXXXXXXXXXIYFNEDPLL 60
           MDSS  L  HAK V  QC+ F  GKY                          YF +DPLL
Sbjct: 1   MDSSPNLRHHAKDVPTQCETFLPGKYPSSRRTASFSSYSSSLSPSSSSLESFYFLDDPLL 60

Query: 61  SPASPLIRLSGVPFSWEHLPGIPXXXXXXXXXXXXXXXXXXXXXXXXSQHSSKRT----T 116
           SPA+PL R SGVPFSWEHLPGIP                        +  ++  +     
Sbjct: 61  SPATPL-RFSGVPFSWEHLPGIPKKHNNSKKNHKSSMKLLPLPPPTITTSTTTHSSKKLN 119

Query: 117 HEETWKKNSTKSVFQRDPFFAAMVECSKDDDDQEEITSGNLW-NGAKVSRSVSDRFGFFS 175
           HE+T K     S+ + DPFFAAMV+CSKDDDD EE T GNLW NG KVSRS+SDRFGF S
Sbjct: 120 HEDT-KIRKKNSIQRDDPFFAAMVKCSKDDDDHEE-TIGNLWTNGDKVSRSISDRFGFIS 177

Query: 176 LYGSCKRTCAVSESLVFLPSSRRSTYQHVTRRPL 209
           LYGSCKRTCAVSESLV+LPS+RRSTYQ V  R L
Sbjct: 178 LYGSCKRTCAVSESLVYLPSTRRSTYQKVNGRSL 211