Miyakogusa Predicted Gene

Lj5g3v1864570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1864570.1 Non Characterized Hit- tr|B9RNB4|B9RNB4_RICCO
Transcription factor, putative OS=Ricinus communis
GN=,60,1e-16,seg,NULL; HLH,Helix-loop-helix domain,CUFF.56076.1
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g096530.1 | hypothetical protein | HC | chr1:43469757-4346...    94   3e-20
Medtr5g091690.1 | hypothetical protein | HC | chr5:40005134-4000...    52   1e-07

>Medtr1g096530.1 | hypothetical protein | HC |
           chr1:43469757-43469198 | 20130731
          Length = 105

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 58/69 (84%), Gaps = 6/69 (8%)

Query: 52  LMKRRRGGNRRGTVAIQKRVRTLKRLVPNSD-SMGLDGLFRETADYILALQTRVRVMQVM 110
           LMKRRRG     +  IQ+RVRTLKRL+PNSD S+GLDGLFRETA+YIL+LQ RV VM+VM
Sbjct: 42  LMKRRRG-----SYGIQRRVRTLKRLIPNSDESIGLDGLFRETANYILSLQNRVSVMKVM 96

Query: 111 VDVLTGYDD 119
           VDVLTG D+
Sbjct: 97  VDVLTGSDE 105


>Medtr5g091690.1 | hypothetical protein | HC |
           chr5:40005134-40006128 | 20130731
          Length = 147

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 4/51 (7%)

Query: 67  IQKRVRTLKRLVPNSDSMGLDGLFRETADYILALQTRVRVMQVMVDVLTGY 117
           +++++  L+R+VPN +S G+D LF ETA YI+ALQ +V+ ++     LTG+
Sbjct: 88  VERKIHALQRIVPNGESFGVDKLFDETAGYIVALQYQVKALK----ALTGF 134