Miyakogusa Predicted Gene

Lj5g3v1853140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1853140.1 tr|I2FN51|I2FN51_USTHO Related to
spliceosome-associated protein SAP-49 OS=Ustilago hordei PE=4
SV=1,39.77,0.000000000000001,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; SUBFAMILY NOT NAMED,NULL; FAMILY
N,CUFF.56057.1
         (196 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g096170.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   280   8e-76
Medtr1g096170.2 | RNA recognition motif, a.k.a. RRM, RBD protein...   274   4e-74
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    77   1e-14
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-...    54   1e-07
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c...    51   7e-07
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701...    49   3e-06
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341...    47   8e-06

>Medtr1g096170.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:43247569-43243736 | 20130731
          Length = 200

 Score =  280 bits (715), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 141/200 (70%), Positives = 158/200 (79%), Gaps = 4/200 (2%)

Query: 1   MSDNSGCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEV 60
           MS NS C+VYIGNLDERVTDR+LYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEE+
Sbjct: 1   MSGNSSCTVYIGNLDERVTDRILYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEI 60

Query: 61  ADYAVRLFSGLVTLYNRTLKFAISGKDKTTPNGSTANTPSSNSSQRPRLNPVPIYNSENF 120
           ADYAVRLFSGLVTLY RTLKFAISG+DK TPN STA TPSSNSSQRPR  PV I +SENF
Sbjct: 61  ADYAVRLFSGLVTLYKRTLKFAISGRDKNTPNSSTATTPSSNSSQRPRPYPVQINSSENF 120

Query: 121 QHSARLSTPERFSDYAVNHSQVPP----HRLSGQSSGYGTHYGSNNYEYSRRALGATLDX 176
           QHSAR S P+RFSD A+N+SQV      +R + QS+ YG+H+G N+ ++SRRA G  LD 
Sbjct: 121 QHSARQSIPDRFSDRALNYSQVGELLGRNRATNQSNAYGSHFGGNHLDHSRRAFGEELDN 180

Query: 177 XXXXXXXXXXXXXPITYPSY 196
                        PI+YP Y
Sbjct: 181 ASRSRPRRPDTVSPISYPPY 200


>Medtr1g096170.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:43247515-43243766 | 20130731
          Length = 205

 Score =  274 bits (700), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 141/205 (68%), Positives = 158/205 (77%), Gaps = 9/205 (4%)

Query: 1   MSDNSGCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEV 60
           MS NS C+VYIGNLDERVTDR+LYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEE+
Sbjct: 1   MSGNSSCTVYIGNLDERVTDRILYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEI 60

Query: 61  ADYAVRLFSGLVTLYNRTLKFA-----ISGKDKTTPNGSTANTPSSNSSQRPRLNPVPIY 115
           ADYAVRLFSGLVTLY RTLKFA     ISG+DK TPN STA TPSSNSSQRPR  PV I 
Sbjct: 61  ADYAVRLFSGLVTLYKRTLKFASANKQISGRDKNTPNSSTATTPSSNSSQRPRPYPVQIN 120

Query: 116 NSENFQHSARLSTPERFSDYAVNHSQVPP----HRLSGQSSGYGTHYGSNNYEYSRRALG 171
           +SENFQHSAR S P+RFSD A+N+SQV      +R + QS+ YG+H+G N+ ++SRRA G
Sbjct: 121 SSENFQHSARQSIPDRFSDRALNYSQVGELLGRNRATNQSNAYGSHFGGNHLDHSRRAFG 180

Query: 172 ATLDXXXXXXXXXXXXXXPITYPSY 196
             LD              PI+YP Y
Sbjct: 181 EELDNASRSRPRRPDTVSPISYPPY 205


>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr3:29411645-29406062 | 20130731
          Length = 379

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 4   NSGCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADY 63
           N   + Y+GNLD ++++ +L+++ +QAG VV++++PKD+ + + +G+ F E+ +EE ADY
Sbjct: 22  NQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADY 81

Query: 64  AVRLFSGLVTLYNRTLKFAISGKDKTT 90
           A+++ + ++ LY + ++   + +DK +
Sbjct: 82  AIKVLN-MIKLYGKPIRVNKASQDKKS 107



 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 6   GCSVYIGNLDERVTDRVLYDILIQAGRVV-DLHIPKDKESEKPKGFAFAEYETEEVADYA 64
           G +++IGNLD  V +++LYD     G +V +  I +D ++   +GF F  Y++ E +D A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 170

Query: 65  VRLFSGLVTLYNRTLKFAISGKDKTTPNGSTANTPS 100
           +   +G   L NR +  + + K  T   G    TP+
Sbjct: 171 IEAMNGQY-LCNRQITVSYAYKKDT--KGERHGTPA 203


>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
           chr7:43324307-43322087 | 20130731
          Length = 318

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 2   SDNSGCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVA 61
           SD++G  +Y+GNL   +T   L DI  +AG VV + I  D+ +++ +GFAF   ++ E A
Sbjct: 105 SDDAG-RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEA 163

Query: 62  DYAVRLFSG 70
             A+R+F G
Sbjct: 164 KEAIRMFDG 172


>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
           chr1:43879642-43873268 | 20130731
          Length = 572

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 8   SVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADYAVRL 67
           +V++GN+    T+  L +I  + G V+   +  D+E+ KPKG+ F EY  EE A  A R 
Sbjct: 30  TVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRN 89

Query: 68  FSGLVTLYNRTLKFAISGKDK 88
             G   +  R L+   +  DK
Sbjct: 90  LQG-YEINGRQLRVDFAENDK 109


>Medtr3g102040.1 | polyadenylate-binding protein | HC |
           chr3:47012095-47003272 | 20130731
          Length = 622

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 8   SVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADYAVRL 67
           S+Y+G+LD  VTD  LYD+  Q G+VV + I +D  S++  G+ +  +     A  A+ +
Sbjct: 25  SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84

Query: 68  FSGLVTLYNRTLKFAISGKDKTTPNGSTAN 97
            +    L N+ ++   S +D +      AN
Sbjct: 85  LN-FTPLNNKPIRIMYSHRDPSVRKSGAAN 113


>Medtr4g085540.1 | polyadenylate-binding protein | HC |
           chr4:33416965-33423437 | 20130731
          Length = 654

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 8   SVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADYAVRL 67
           S+Y+G+LD  VTD  LYD+  Q G+VV + + +D  + +  G+ +  Y   + A  A+ +
Sbjct: 35  SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 94

Query: 68  FSGLVTLYNRTLKFAISGKDKTTPNGSTAN 97
            +    L NR ++   S +D +       N
Sbjct: 95  LN-FTPLNNRPIRIMYSHRDPSIRKSGQGN 123