Miyakogusa Predicted Gene

Lj5g3v1849500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1849500.1 Non Characterized Hit- tr|K4CN35|K4CN35_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,59.09,9e-19,coiled-coil,NULL; seg,NULL; Vma12,ATPase, vacuolar
ER assembly factor, Vma12,CUFF.56026.1
         (227 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g095620.1 | endoplasmic reticulum-based factor for assembl...   281   3e-76

>Medtr1g095620.1 | endoplasmic reticulum-based factor for assembly
           of V-ATPase | HC | chr1:43030040-43026516 | 20130731
          Length = 216

 Score =  281 bits (720), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 143/212 (67%), Positives = 156/212 (73%), Gaps = 1/212 (0%)

Query: 15  TENS-TRVGLIISITDSIRTFLTGASNNPTXXXXXXXXXXXXXXXXXVPYAPLRAVWIAS 73
           TEN   RVGLIIS T  IR FL+ AS + T                 VPY PLRA+WIAS
Sbjct: 3   TENILNRVGLIISSTHFIRAFLSEASTDTTLSAELRQKCSDLIAQSNVPYEPLRAIWIAS 62

Query: 74  DPSTRPELTRLFSGTRFVFSSPKPXXXXXXXXXXXXXXXXXXXXXAYQELVKDIAPKQDV 133
           DPSTRPELT+L  GT F+FSSPKP                     AYQELVKDIAPK+DV
Sbjct: 63  DPSTRPELTQLLWGTSFIFSSPKPREKSEELKARLKKLEDIAERKAYQELVKDIAPKEDV 122

Query: 134 VEPFSSYKDQLGFGLHVLVTMFTGYLVGYAAFRALFNHGPAMNAAGGILGLVGAMLVETF 193
            EPFSSYKDQLGFGLHVLVTMFTGYLVGYAAFRALF+H PAMNAAGGILGLVGAMLVETF
Sbjct: 123 TEPFSSYKDQLGFGLHVLVTMFTGYLVGYAAFRALFDHSPAMNAAGGILGLVGAMLVETF 182

Query: 194 LFIIRSSNLDDSKTRKSNKKPRSPFSTSSLKK 225
           LFIIR+S+LD +KT++SN+KPRS FSTSSLKK
Sbjct: 183 LFIIRNSDLDSNKTKRSNQKPRSSFSTSSLKK 214