Miyakogusa Predicted Gene

Lj5g3v1815200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1815200.1 tr|I3SFN4|I3SFN4_LOTJA Chorismate synthase
OS=Lotus japonicus PE=2 SV=1,97.92,0,Chorismate_synt,Chorismate
synthase; CHORISMATE_SYNTHASE_3,Chorismate synthase, conserved site;
CHOR,CUFF.56013.1
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g095250.1 | chorismate synthase | HC | chr1:42878234-42869...   348   2e-96
Medtr0368s0020.1 | chorismate synthase | HC | scaffold0368:4995-...    60   1e-09

>Medtr1g095250.1 | chorismate synthase | HC | chr1:42878234-42869055
           | 20130731
          Length = 436

 Score =  348 bits (892), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/192 (86%), Positives = 178/192 (92%)

Query: 1   MISAIDAIRVRGDSVGGVVTCIVRNCPRGFGSPVFDKLEAELAKAVMSLPATKGFQFGSG 60
           MISAIDA+RV+GDSVGGVVTCIVRNCPRG GSPVFDKLEAELAKA MSLPATKGFQFGSG
Sbjct: 245 MISAIDAVRVKGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAAMSLPATKGFQFGSG 304

Query: 61  FAGTFLTGSEHNDEFYIDEHGKMRTRTNRSGGIQGGISNGEIINMRIAFKPTATIGKKQL 120
           FAGTFLTGSEHNDEFYID++GKMRTRTNRSGGIQGGISNGEIINMRI FKPT+TI KKQ 
Sbjct: 305 FAGTFLTGSEHNDEFYIDQNGKMRTRTNRSGGIQGGISNGEIINMRIGFKPTSTITKKQS 364

Query: 121 TVTREKKETELITRGRHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSELQDP 180
           TVTR+KKETELI RGRHDPCVVPRAVPMVEA+VALVLVDQLMAQ+AQCNLFP N +LQ+ 
Sbjct: 365 TVTRDKKETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCNLFPANFDLQES 424

Query: 181 LSSIFEPEEALF 192
           LS+  E EE  F
Sbjct: 425 LSAKLETEEVPF 436


>Medtr0368s0020.1 | chorismate synthase | HC |
           scaffold0368:4995-7489 | 20130731
          Length = 140

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/28 (92%), Positives = 28/28 (100%)

Query: 1   MISAIDAIRVRGDSVGGVVTCIVRNCPR 28
           MISAIDA+RV+GDSVGGVVTCIVRNCPR
Sbjct: 104 MISAIDAVRVKGDSVGGVVTCIVRNCPR 131