Miyakogusa Predicted Gene

Lj5g3v1811580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1811580.1 tr|G7I519|G7I519_MEDTR Inter-alpha-trypsin
inhibitor heavy chain H3 OS=Medicago truncatula
GN=MTR_1g,75.36,8e-19,seg,NULL,101833_g.1
         (69 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g094830.1 | zinc finger, C3HC4 type (RING finger) protein ...    93   5e-20

>Medtr1g094830.1 | zinc finger, C3HC4 type (RING finger) protein |
          HC | chr1:42650747-42655415 | 20130731
          Length = 728

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 54/66 (81%), Gaps = 9/66 (13%)

Query: 1  MGSKWKKAKVALGLNLCMFVPRTLDDESPPPSTVVSERLSDASLL--------SSRQTTP 52
          MGSKWKKAKVALGLNLCMFVPRTLDD+  PPSTVVSERLSDA+LL        SS+ TTP
Sbjct: 1  MGSKWKKAKVALGLNLCMFVPRTLDDDF-PPSTVVSERLSDAALLSPVNWDKGSSQPTTP 59

Query: 53 VQSFNG 58
          V SF+G
Sbjct: 60 VSSFHG 65