Miyakogusa Predicted Gene

Lj5g3v1806970.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1806970.2 Non Characterized Hit- tr|I3SQ56|I3SQ56_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.36,0,KH_1,K
Homology domain, type 1; Eukaryotic type KH-domain (KH-domain type
I),NULL; seg,NULL; no desc,CUFF.55961.2
         (220 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g061130.1 | RNA-binding pno1-like protein | HC | chr3:2427...   359   1e-99
Medtr5g088410.1 | RNA-binding pno1-like protein | HC | chr5:3837...   199   1e-51

>Medtr3g061130.1 | RNA-binding pno1-like protein | HC |
           chr3:24271101-24273026 | 20130731
          Length = 216

 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 176/215 (81%), Positives = 184/215 (85%)

Query: 6   APSSMEVEAVXXXXXXXXXXXXXXXXXXXXMSDGQVQFRKVSVPPHRYTPLKKAWMDLYT 65
           A SSMEV+ V                    M    VQFRKVSVPPHRYTPLKK WMD+YT
Sbjct: 2   ASSSMEVDNVLSEQKVLPPKPKFEPLKPHEMPGAAVQFRKVSVPPHRYTPLKKVWMDIYT 61

Query: 66  PVYEQMKIDIRMNLKARKVELKTRRDTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDE 125
           PV+EQMKIDIRMNLK RKVELKTR DTPDISNLQKCADFVHAFMLGFDVIDAIA+LRLDE
Sbjct: 62  PVFEQMKIDIRMNLKGRKVELKTRHDTPDISNLQKCADFVHAFMLGFDVIDAIAILRLDE 121

Query: 126 LYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIADSKIHILGSFAN 185
           LY+ESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKF IENASKTRIVIAD+KIHILGSFAN
Sbjct: 122 LYVESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFTIENASKTRIVIADTKIHILGSFAN 181

Query: 186 IKIARDSLCSLILGSPAGKVYSKLRAVTSRLAERF 220
           IKIARDSLC LI+GSPAGKVYSKLRAVTSR+AERF
Sbjct: 182 IKIARDSLCYLIMGSPAGKVYSKLRAVTSRMAERF 216


>Medtr5g088410.1 | RNA-binding pno1-like protein | HC |
           chr5:38377639-38376985 | 20130731
          Length = 188

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/220 (56%), Positives = 137/220 (62%), Gaps = 32/220 (14%)

Query: 1   MQSNEAPSSMEVEAVXXXXXXXXXXXXXXXXXXXXMSDGQVQFRKVSVPPHRYTPLKKAW 60
           MQSN+  SSMEV+ V                    +S GQVQF ++ +P       K  W
Sbjct: 1   MQSNKT-SSMEVDTVPSESKVLPPKPKFEPRD---ISTGQVQFHRIVIPLLG----KLGW 52

Query: 61  MDLYTPVYEQMKIDIRMNLKARKVELKTRRDTPDISNLQKCADFVHAFMLGFDVIDAIAL 120
             +               L  R + L           L  C   +   MLGFDVIDAIAL
Sbjct: 53  TSIL--------------LYMRTIHL----------ILVTCKSVLILSMLGFDVIDAIAL 88

Query: 121 LRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIADSKIHIL 180
           LRLDELY+ESFEIKDVKTLRGDHLSRAIGRLS K GKTKFAIENASKTRIVIAD+KIHIL
Sbjct: 89  LRLDELYVESFEIKDVKTLRGDHLSRAIGRLSRKLGKTKFAIENASKTRIVIADAKIHIL 148

Query: 181 GSFANIKIARDSLCSLILGSPAGKVYSKLRAVTSRLAERF 220
           GSF NIKIAR  LC LI GSPAGKV SKLRAVTS+LA+RF
Sbjct: 149 GSFLNIKIARAFLCDLIKGSPAGKVCSKLRAVTSKLADRF 188