Miyakogusa Predicted Gene

Lj5g3v1774920.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1774920.2 Non Characterized Hit- tr|E1ZMW0|E1ZMW0_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,30.65,0.00000000000002,seg,NULL; Putative single-stranded
nucleic acids-bindi,Single-stranded nucleic acid binding R3H;
coi,CUFF.55908.2
         (453 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g092900.1 | single-stranded nucleic acid-binding protein R...   439   e-123
Medtr1g092910.1 | single-stranded nucleic acid-binding protein R...   386   e-107
Medtr1g092910.2 | single-stranded nucleic acid-binding protein R...   386   e-107
Medtr1g092910.3 | single-stranded nucleic acid-binding protein R...   334   8e-92
Medtr7g088990.1 | single-stranded nucleic acid-binding protein R...   126   4e-29

>Medtr1g092900.1 | single-stranded nucleic acid-binding protein R3H
           | HC | chr1:41836624-41841551 | 20130731
          Length = 507

 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/512 (51%), Positives = 298/512 (58%), Gaps = 66/512 (12%)

Query: 1   MEGSAEDSRAAPESWEVADLD---NRFKLMLSSDNHHXXXXXXX-----XXXXXXXXXXV 52
           MEGS+ED   APESWEVADLD   NR  L++SS+                         V
Sbjct: 1   MEGSSEDLGGAPESWEVADLDDSMNRLNLLISSNKDSNADGAASPHLPNSSSSSISGDNV 60

Query: 53  SDDIINKVDQFLRDAIQNPRERLSILRMEQDIEKFVRDPNRQQLEFQQLPTSYLRLAAHR 112
           SDD +N+VDQFLR+AIQNPRERLSILR+EQD+  F++DP++QQLEF QLPTSYLRLAAHR
Sbjct: 61  SDDAVNQVDQFLREAIQNPRERLSILRIEQDVLNFIKDPHQQQLEFNQLPTSYLRLAAHR 120

Query: 113 LAQHYSLQSMVLLD-NSLPDGSGSRIIVHKTPGCSKLPCIRLADIPVKLPSEDNEVRKVA 171
           +AQHYSLQSMVL D NSLPDGSGSRIIV KT  C K P IRLADIPVKLPSE+N V KVA
Sbjct: 121 VAQHYSLQSMVLQDNNSLPDGSGSRIIVSKTAEC-KRPVIRLADIPVKLPSENNAVMKVA 179

Query: 172 IKQRPKKXXXXXXXXXXXXXXXXXXXXVEERKEEYNXXXXXXXXXXXXXXXXXXXKPEHE 231
           IK RP+K                    VEERKEEYN                   KPE E
Sbjct: 180 IKPRPQKQTQTFGNANSNSGKKNSSKSVEERKEEYN-RARARIFNSSNNGGTVGGKPECE 238

Query: 232 SRKQDNTLIGXXXXXXXXXEGKSASVSDVSSGK--------------ES----------- 266
           +R+QDN+L G         E K ASVSDVSS +              ES           
Sbjct: 239 TRQQDNSLHG--SSLFTRVEDKYASVSDVSSSRGMVGSSTYTNRGLVESSTNTSRGLVEF 296

Query: 267 -------------------VESSTDYSRARSRTEKDSIGRYRESSKVAVFRDREVXXXXX 307
                              VESST+ SRAR+RTEK+ +GRYR+S++VA+FRDRE+     
Sbjct: 297 STNTSRGLVESSANTSRGLVESSTNTSRARNRTEKEPVGRYRQSNRVAIFRDREIDRKDP 356

Query: 308 XXXXXXXXXMQRFDPGFGFNGGSYTMQPMYTPVVNYNTEFPQLGVGSIHGPQFSTEHQPG 367
                    MQRFDPGFGFNGGSY MQPMY P+VNYNTEFPQL  GS HGPQ S EHQP 
Sbjct: 357 DYDRSYDRYMQRFDPGFGFNGGSYPMQPMYAPIVNYNTEFPQL--GSPHGPQRSAEHQPR 414

Query: 368 PLPHHXXXXXXX-----XXXXXXXXYGHPETILSPFNPSQVALRSPSTLYLHSSQYSSQG 422
           PLP H                    YGHPET++SPFNP+QV + S ST+YLHSSQY  Q 
Sbjct: 415 PLPQHISGQHISGTWVPQSTPAGIGYGHPETMMSPFNPNQVGIHSSSTMYLHSSQYPCQH 474

Query: 423 PGMPFIXXXXXXXXXXXXXX--XDASYGFARP 452
           PGMPFI                 DAS+G ARP
Sbjct: 475 PGMPFIHPEHIHQPFAQSHQPPPDASFGLARP 506


>Medtr1g092910.1 | single-stranded nucleic acid-binding protein R3H
           | HC | chr1:41843309-41848152 | 20130731
          Length = 435

 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/444 (54%), Positives = 271/444 (61%), Gaps = 20/444 (4%)

Query: 18  ADLD---NRFKLMLSSD---NHHXXXXXXXXXXXXXXXXXVSDDIINKVDQFLRDAIQNP 71
           ADL+   NR  L +SSD   N H                   DD IN+VDQFL DAIQNP
Sbjct: 4   ADLNESMNRLNLTISSDKDSNSHQHADDAPIPPSSSG----GDDAINQVDQFLLDAIQNP 59

Query: 72  RERLSILRMEQDIEKFVRDPNRQQLEFQQLPTSYLRLAAHRLAQHYSLQSMVLLDNSLPD 131
           R+RLSILR+EQD+ KF++DPN+QQLEFQQLPTSYLRLAAHR+AQHYSLQSMVLLD SLPD
Sbjct: 60  RQRLSILRLEQDVVKFIQDPNQQQLEFQQLPTSYLRLAAHRVAQHYSLQSMVLLDYSLPD 119

Query: 132 GSGSRIIVHKTPGCSKLPCIRLADIPVKLPSEDNEVRKVAIKQRPKKXXXXXXXXXXXXX 191
            SGS+IIVHKT GC K P IRLADIPVKLPSE+N V+K+AIKQRPKK             
Sbjct: 120 DSGSQIIVHKTSGC-KPPLIRLADIPVKLPSENNTVKKIAIKQRPKKQSLGCSDTDSNSV 178

Query: 192 XXXXXXXVEERKEEYNXXXXXXXXXXXXXXXXXXXKPEHESRKQDNTLIGXXXXXXXXXE 251
                  VEER EEY+                   KPE ESRKQDN+L+G         E
Sbjct: 179 KNQNSKSVEERTEEYS-RARARIFSSSDNDGTLGGKPECESRKQDNSLVG--SLDVSRVE 235

Query: 252 GKSASVSDVSSGKESVESSTDYSRARSRTEKDSIGRYRESSKVAVFRDREVXXXXXXXXX 311
           GKSASVSDVSS +  VESST+ SRARSRTE + +G  R+SS+VA+FRD EV         
Sbjct: 236 GKSASVSDVSSSRLLVESSTNNSRARSRTETELVGGQRQSSRVAIFRDHEVDRKDPDYNR 295

Query: 312 XXXXXMQRFDPGFGFNGGSYTMQPMYTPVVNYNTEFPQLGVGSIHGPQFSTEHQPGPLPH 371
                +QRFDPGFGFNGGSYTMQPMY  V NY+T F QL  GS HG Q S EH P P   
Sbjct: 296 NYERFVQRFDPGFGFNGGSYTMQPMYATVSNYHTGFQQL--GSTHGLQLSAEHHPQPFLQ 353

Query: 372 HXXXXXXXXXXXXXXXYGHPETILSPFNPSQVALRSPSTLYLHSSQYSSQGPGMPFIXXX 431
           H               YG+PET+L PFNP QV + S  TLYLHS QYS    GMPFI   
Sbjct: 354 H-VPGPWAPPTPAGIGYGYPETML-PFNPRQVGVCSAPTLYLHSPQYSCHCHGMPFIPHE 411

Query: 432 XXXXXXXXXXX--XDASYGFARPW 453
                         DAS+G A PW
Sbjct: 412 PLHQPFAQSHQPPPDASFGMAWPW 435


>Medtr1g092910.2 | single-stranded nucleic acid-binding protein R3H
           | HC | chr1:41843337-41848152 | 20130731
          Length = 435

 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/444 (54%), Positives = 271/444 (61%), Gaps = 20/444 (4%)

Query: 18  ADLD---NRFKLMLSSD---NHHXXXXXXXXXXXXXXXXXVSDDIINKVDQFLRDAIQNP 71
           ADL+   NR  L +SSD   N H                   DD IN+VDQFL DAIQNP
Sbjct: 4   ADLNESMNRLNLTISSDKDSNSHQHADDAPIPPSSSG----GDDAINQVDQFLLDAIQNP 59

Query: 72  RERLSILRMEQDIEKFVRDPNRQQLEFQQLPTSYLRLAAHRLAQHYSLQSMVLLDNSLPD 131
           R+RLSILR+EQD+ KF++DPN+QQLEFQQLPTSYLRLAAHR+AQHYSLQSMVLLD SLPD
Sbjct: 60  RQRLSILRLEQDVVKFIQDPNQQQLEFQQLPTSYLRLAAHRVAQHYSLQSMVLLDYSLPD 119

Query: 132 GSGSRIIVHKTPGCSKLPCIRLADIPVKLPSEDNEVRKVAIKQRPKKXXXXXXXXXXXXX 191
            SGS+IIVHKT GC K P IRLADIPVKLPSE+N V+K+AIKQRPKK             
Sbjct: 120 DSGSQIIVHKTSGC-KPPLIRLADIPVKLPSENNTVKKIAIKQRPKKQSLGCSDTDSNSV 178

Query: 192 XXXXXXXVEERKEEYNXXXXXXXXXXXXXXXXXXXKPEHESRKQDNTLIGXXXXXXXXXE 251
                  VEER EEY+                   KPE ESRKQDN+L+G         E
Sbjct: 179 KNQNSKSVEERTEEYS-RARARIFSSSDNDGTLGGKPECESRKQDNSLVG--SLDVSRVE 235

Query: 252 GKSASVSDVSSGKESVESSTDYSRARSRTEKDSIGRYRESSKVAVFRDREVXXXXXXXXX 311
           GKSASVSDVSS +  VESST+ SRARSRTE + +G  R+SS+VA+FRD EV         
Sbjct: 236 GKSASVSDVSSSRLLVESSTNNSRARSRTETELVGGQRQSSRVAIFRDHEVDRKDPDYNR 295

Query: 312 XXXXXMQRFDPGFGFNGGSYTMQPMYTPVVNYNTEFPQLGVGSIHGPQFSTEHQPGPLPH 371
                +QRFDPGFGFNGGSYTMQPMY  V NY+T F QL  GS HG Q S EH P P   
Sbjct: 296 NYERFVQRFDPGFGFNGGSYTMQPMYATVSNYHTGFQQL--GSTHGLQLSAEHHPQPFLQ 353

Query: 372 HXXXXXXXXXXXXXXXYGHPETILSPFNPSQVALRSPSTLYLHSSQYSSQGPGMPFIXXX 431
           H               YG+PET+L PFNP QV + S  TLYLHS QYS    GMPFI   
Sbjct: 354 H-VPGPWAPPTPAGIGYGYPETML-PFNPRQVGVCSAPTLYLHSPQYSCHCHGMPFIPHE 411

Query: 432 XXXXXXXXXXX--XDASYGFARPW 453
                         DAS+G A PW
Sbjct: 412 PLHQPFAQSHQPPPDASFGMAWPW 435


>Medtr1g092910.3 | single-stranded nucleic acid-binding protein R3H
           | HC | chr1:41843337-41848136 | 20130731
          Length = 399

 Score =  334 bits (857), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 206/373 (55%), Positives = 231/373 (61%), Gaps = 10/373 (2%)

Query: 83  DIEKFVRDPNRQQLEFQQLPTSYLRLAAHRLAQHYSLQSMVLLDNSLPDGSGSRIIVHKT 142
           D+ KF++DPN+QQLEFQQLPTSYLRLAAHR+AQHYSLQSMVLLD SLPD SGS+IIVHKT
Sbjct: 35  DVVKFIQDPNQQQLEFQQLPTSYLRLAAHRVAQHYSLQSMVLLDYSLPDDSGSQIIVHKT 94

Query: 143 PGCSKLPCIRLADIPVKLPSEDNEVRKVAIKQRPKKXXXXXXXXXXXXXXXXXXXXVEER 202
            GC K P IRLADIPVKLPSE+N V+K+AIKQRPKK                    VEER
Sbjct: 95  SGC-KPPLIRLADIPVKLPSENNTVKKIAIKQRPKKQSLGCSDTDSNSVKNQNSKSVEER 153

Query: 203 KEEYNXXXXXXXXXXXXXXXXXXXKPEHESRKQDNTLIGXXXXXXXXXEGKSASVSDVSS 262
            EEY+                   KPE ESRKQDN+L+G         EGKSASVSDVSS
Sbjct: 154 TEEYSRARARIFSSSDNDGTLGG-KPECESRKQDNSLVGSLDVSRV--EGKSASVSDVSS 210

Query: 263 GKESVESSTDYSRARSRTEKDSIGRYRESSKVAVFRDREVXXXXXXXXXXXXXXMQRFDP 322
            +  VESST+ SRARSRTE + +G  R+SS+VA+FRD EV              +QRFDP
Sbjct: 211 SRLLVESSTNNSRARSRTETELVGGQRQSSRVAIFRDHEVDRKDPDYNRNYERFVQRFDP 270

Query: 323 GFGFNGGSYTMQPMYTPVVNYNTEFPQLGVGSIHGPQFSTEHQPGPLPHHXXXXXXXXXX 382
           GFGFNGGSYTMQPMY  V NY+T F QL  GS HG Q S EH P P   H          
Sbjct: 271 GFGFNGGSYTMQPMYATVSNYHTGFQQL--GSTHGLQLSAEHHPQPFLQH-VPGPWAPPT 327

Query: 383 XXXXXYGHPETILSPFNPSQVALRSPSTLYLHSSQYSSQGPGMPFIXXXXXXXXXXXXXX 442
                YG+PET+L PFNP QV + S  TLYLHS QYS    GMPFI              
Sbjct: 328 PAGIGYGYPETML-PFNPRQVGVCSAPTLYLHSPQYSCHCHGMPFIPHEPLHQPFAQSHQ 386

Query: 443 --XDASYGFARPW 453
              DAS+G A PW
Sbjct: 387 PPPDASFGMAWPW 399


>Medtr7g088990.1 | single-stranded nucleic acid-binding protein R3H
           | HC | chr7:34752150-34756924 | 20130731
          Length = 353

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 98/149 (65%), Gaps = 7/149 (4%)

Query: 60  VDQFLRDAIQNPRERLSILRMEQDIEKFVRDPNRQQLEFQQLPTSYLRLAAHRLAQHYSL 119
           VD FL +A+QNPR RL+ILRME DI+KF+ + ++Q  EFQ  P+SYLRLAAHR+AQHY +
Sbjct: 21  VDPFLVEALQNPRHRLTILRMELDIQKFMNNADQQHFEFQHFPSSYLRLAAHRVAQHYGM 80

Query: 120 QSMVLLDNSLPDGSGSRIIVHKTPGCSKLPCIRLADIPVK-LPSEDNEVRKVAIKQRPKK 178
           Q+MV  D  L DG  S+I+V K P  SK P +RL++IP K L +E +E++K+ I+ RP K
Sbjct: 81  QTMV-QDIGL-DGQ-SKILVRKLPE-SKYPVVRLSEIPAKQLDNEKSELKKIVIQSRPHK 136

Query: 179 XXXXXXXXXXXXXXXXXXXXVEERKEEYN 207
                               VEERKEEY+
Sbjct: 137 --TSLNGANDSTKKGNPLRSVEERKEEYD 163