Miyakogusa Predicted Gene

Lj5g3v1749270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1749270.1 Non Characterized Hit- tr|I3T5B9|I3T5B9_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,77.39,0,diverge_rpsU: rpsU-divergently transcribed
protein,Ubiquinone biosynthesis protein COQ9; GB DEF: T29,CUFF.55853.1
         (310 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g125000.1 | ubiquinone biosynthesis protein COQ9 | HC | ch...   445   e-125
Medtr4g125000.2 | ubiquinone biosynthesis protein COQ9 | HC | ch...   374   e-104

>Medtr4g125000.1 | ubiquinone biosynthesis protein COQ9 | HC |
           chr4:51848312-51851948 | 20130731
          Length = 310

 Score =  445 bits (1144), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/316 (71%), Positives = 248/316 (78%), Gaps = 12/316 (3%)

Query: 1   MYXXXXXXXXXXXXHYNSNTGLRFRRPQSLIASYRFSTSE-TQPLSDPHSTN---PIYTT 56
           MY             +N N  LRFRR  +LI   RFST+E  QP S+PHS +   PI TT
Sbjct: 1   MYRTAAKRLLCSARQFNGNAALRFRRHNALITYSRFSTTEINQPFSNPHSIHDAIPISTT 60

Query: 57  E--TPIIVDXXXXXXXXXXXXXXXXXGEDFRRQETPKPGAKYEDEQARLLSASVTHVLKL 114
           E   P + D                  ED  R E+PK   KYEDE ARLLSAS+ HV+KL
Sbjct: 61  EIENPTLYDSTSSSTSSSSTT-----DEDSHRFESPKSKTKYEDEHARLLSASLVHVMKL 115

Query: 115 GWTEAALIAGAKDVGLSPSIVGSLPRKEAALVEFFMDDCLQKLIDRIDSDESLKNLLTPS 174
           GWTE AL+AGAKDVGLSPSIVGSL RKEAALVEF+MDDCLQ+LID+ID+D SLKNL TPS
Sbjct: 116 GWTETALMAGAKDVGLSPSIVGSLSRKEAALVEFYMDDCLQRLIDKIDTDGSLKNL-TPS 174

Query: 175 DCISKLIRYRLEMQAPFISSWPQALSIQAQPVNVPTSFKQRAMLVDEIWHAAGDNASDID 234
           DCISKLIR+RLEMQAP+IS+WPQALSIQAQPVNVPTSFKQRAMLVDEIWHAAGDNASD+D
Sbjct: 175 DCISKLIRFRLEMQAPYISTWPQALSIQAQPVNVPTSFKQRAMLVDEIWHAAGDNASDLD 234

Query: 235 WYAKRTILGGIYSTTEIYMLTDSSPDFRDTWSFLDARVKDAFDLKKTLQEAQYLAEAVSA 294
           WYAKRT+LGGIYSTTEIYMLTD S DFRDTW+FLDARVKDAFDLKKT+QEAQYLAEAVS 
Sbjct: 235 WYAKRTVLGGIYSTTEIYMLTDGSADFRDTWAFLDARVKDAFDLKKTIQEAQYLAEAVST 294

Query: 295 GLGNSFQGFVGKVFRR 310
           GLGN+F+ FVGKVFRR
Sbjct: 295 GLGNTFEEFVGKVFRR 310


>Medtr4g125000.2 | ubiquinone biosynthesis protein COQ9 | HC |
           chr4:51848327-51851622 | 20130731
          Length = 260

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/204 (87%), Positives = 193/204 (94%), Gaps = 1/204 (0%)

Query: 107 SVTHVLKLGWTEAALIAGAKDVGLSPSIVGSLPRKEAALVEFFMDDCLQKLIDRIDSDES 166
           S T  +KLGWTE AL+AGAKDVGLSPSIVGSL RKEAALVEF+MDDCLQ+LID+ID+D S
Sbjct: 58  SFTSFMKLGWTETALMAGAKDVGLSPSIVGSLSRKEAALVEFYMDDCLQRLIDKIDTDGS 117

Query: 167 LKNLLTPSDCISKLIRYRLEMQAPFISSWPQALSIQAQPVNVPTSFKQRAMLVDEIWHAA 226
           LKNL TPSDCISKLIR+RLEMQAP+IS+WPQALSIQAQPVNVPTSFKQRAMLVDEIWHAA
Sbjct: 118 LKNL-TPSDCISKLIRFRLEMQAPYISTWPQALSIQAQPVNVPTSFKQRAMLVDEIWHAA 176

Query: 227 GDNASDIDWYAKRTILGGIYSTTEIYMLTDSSPDFRDTWSFLDARVKDAFDLKKTLQEAQ 286
           GDNASD+DWYAKRT+LGGIYSTTEIYMLTD S DFRDTW+FLDARVKDAFDLKKT+QEAQ
Sbjct: 177 GDNASDLDWYAKRTVLGGIYSTTEIYMLTDGSADFRDTWAFLDARVKDAFDLKKTIQEAQ 236

Query: 287 YLAEAVSAGLGNSFQGFVGKVFRR 310
           YLAEAVS GLGN+F+ FVGKVFRR
Sbjct: 237 YLAEAVSTGLGNTFEEFVGKVFRR 260