Miyakogusa Predicted Gene

Lj5g3v1737150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1737150.1 Non Characterized Hit- tr|I1NHP3|I1NHP3_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,48.12,2e-18,seg,NULL,CUFF.55843.1
         (130 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g492600.1 | transmembrane protein, putative | HC | chr1:41...    78   3e-15
Medtr1g492630.1 | transmembrane protein, putative | HC | chr1:41...    77   3e-15

>Medtr1g492600.1 | transmembrane protein, putative | HC |
           chr1:41501604-41499251 | 20130731
          Length = 157

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 47/63 (74%), Gaps = 2/63 (3%)

Query: 63  SLVRFPKTQ-PVAPPSPLQAEADPESSTKTSNPFILWQVYALGGIIISKWIWARWNERHE 121
           ++V FPKTQ  V    PLQAE+   SSTKTSNP IL+QVYA+G   IS+WIWARWNER  
Sbjct: 79  NVVTFPKTQLAVVSEQPLQAESQI-SSTKTSNPLILYQVYAVGAFFISRWIWARWNERKA 137

Query: 122 RGK 124
           +G+
Sbjct: 138 QGR 140


>Medtr1g492630.1 | transmembrane protein, putative | HC |
           chr1:41511757-41509433 | 20130731
          Length = 162

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 47/63 (74%), Gaps = 2/63 (3%)

Query: 63  SLVRFPKTQ-PVAPPSPLQAEADPESSTKTSNPFILWQVYALGGIIISKWIWARWNERHE 121
           ++V FPKTQ  V    PLQAE+   SSTKTSNP IL+QVYA+G   IS+WIWARWNER  
Sbjct: 84  NVVTFPKTQLAVVSEQPLQAESQI-SSTKTSNPLILYQVYAVGAFFISRWIWARWNERKA 142

Query: 122 RGK 124
           +G+
Sbjct: 143 QGR 145