Miyakogusa Predicted Gene

Lj5g3v1723820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1723820.1 tr|B6K694|B6K694_SCHJY U4/U6 X U5 tri-snRNP
complex subunit Dim1 OS=Schizosaccharomyces japonicus
(s,38.97,2e-19,Thioredoxin-like,Thioredoxin-like fold; DIM1,mRNA
splicing factor, thioredoxin-like U5 snRNP; THIORE,CUFF.56258.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g080840.1 | thioredoxin-like protein 4B | HC | chr1:359615...   229   6e-61
Medtr3g108770.1 | mRNA splicing factor, thioredoxin-like U5 snRN...    99   1e-21
Medtr3g108770.2 | mRNA splicing factor, thioredoxin-like U5 snRN...    99   1e-21
Medtr1g045900.1 | mRNA splicing factor, thioredoxin-like U5 snRN...    98   3e-21
Medtr4g075190.1 | mRNA splicing factor, thioredoxin-like U5 snRN...    93   8e-20

>Medtr1g080840.1 | thioredoxin-like protein 4B | HC |
           chr1:35961547-35964407 | 20130731
          Length = 162

 Score =  229 bits (585), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 110/121 (90%), Positives = 116/121 (95%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQIFSKAARDVSKFATVAL 60
           M+YMLTTLS+K+EVDSIIRDTIDKVLVLRFGR SDP CL LDQI SKAAR+VSKFATVAL
Sbjct: 1   MSYMLTTLSQKREVDSIIRDTIDKVLVLRFGRESDPNCLHLDQILSKAAREVSKFATVAL 60

Query: 61  VDVDSPDIQVYVKYFDITLIPSTMFFFNAHHMKMDSGTADHTKWVGAFHKKQDFIDVVEA 120
           VDVDSPDIQVYVKYFDITLIPST+FFFNAHHMKMDSGTADHTKW+GAFHKKQDFIDVVE 
Sbjct: 61  VDVDSPDIQVYVKYFDITLIPSTLFFFNAHHMKMDSGTADHTKWIGAFHKKQDFIDVVER 120

Query: 121 I 121
           I
Sbjct: 121 I 121


>Medtr3g108770.1 | mRNA splicing factor, thioredoxin-like U5 snRNP
           protein | HC | chr3:50238238-50236330 | 20130731
          Length = 142

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 6/137 (4%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQIFSKAARDVSKFATVAL 60
           M+YML  L     VD  I    ++++V+RFG   D  C+Q+D++ S  A  +  FA + L
Sbjct: 1   MSYMLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61  VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSGTADHTKWVGAFHKKQDFIDVV 118
           VD+ + PD     + +D    PST MFFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDII 116

Query: 119 EAIFRGAMKGKLIVNCP 135
           E ++RGA KG+ +V  P
Sbjct: 117 ETVYRGARKGRGLVIAP 133


>Medtr3g108770.2 | mRNA splicing factor, thioredoxin-like U5 snRNP
           protein | HC | chr3:50238434-50236330 | 20130731
          Length = 142

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 6/137 (4%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQIFSKAARDVSKFATVAL 60
           M+YML  L     VD  I    ++++V+RFG   D  C+Q+D++ S  A  +  FA + L
Sbjct: 1   MSYMLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61  VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSGTADHTKWVGAFHKKQDFIDVV 118
           VD+ + PD     + +D    PST MFFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDII 116

Query: 119 EAIFRGAMKGKLIVNCP 135
           E ++RGA KG+ +V  P
Sbjct: 117 ETVYRGARKGRGLVIAP 133


>Medtr1g045900.1 | mRNA splicing factor, thioredoxin-like U5 snRNP
           protein | HC | chr1:17280905-17278305 | 20130731
          Length = 142

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 6/137 (4%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQIFSKAARDVSKFATVAL 60
           M+Y+L  L     VD  I    ++++V+RFG   D  C+Q+D++ S  A  +  FA + L
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYL 60

Query: 61  VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSGTADHTKWVGAFHKKQDFIDVV 118
           VD+ + PD     + +D    PST MFFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWAMKDKQEFIDII 116

Query: 119 EAIFRGAMKGKLIVNCP 135
           E ++RGA KG+ +V  P
Sbjct: 117 ETVYRGARKGRGLVIAP 133


>Medtr4g075190.1 | mRNA splicing factor, thioredoxin-like U5 snRNP
           protein | HC | chr4:28719124-28719705 | 20130731
          Length = 142

 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 6/137 (4%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQIFSKAARDVSKFATVAL 60
           M+Y+L  L     VD  I    ++++V+RFG   D  C+Q+D++ +  A  +  FA + L
Sbjct: 1   MSYLLPHLHSGWAVDQAILCEEERLVVIRFGHDWDDTCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSGTADHTKWVGAFHKKQDFIDVV 118
           VD+ + PD     + +D    P T MFFF   H+ +D GT ++ K   A   KQ+FID+V
Sbjct: 61  VDITEVPDFNTMYELYD----PCTVMFFFRNKHIMIDLGTGNNNKINWALRDKQEFIDIV 116

Query: 119 EAIFRGAMKGKLIVNCP 135
           E +F GA KG+ +V  P
Sbjct: 117 ETVFHGARKGRGLVISP 133