Miyakogusa Predicted Gene

Lj5g3v1697840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1697840.1 Non Characterized Hit- tr|D7TM48|D7TM48_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50.43,3e-18,coiled-coil,NULL; Shugoshin_C,Shugoshin, C-terminal;
seg,NULL,CUFF.55777.1
         (402 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g090657.1 | shugoshin protein | HC | chr1:40597343-4060037...   335   3e-92
Medtr1g090657.2 | shugoshin protein | HC | chr1:40597343-4060037...   325   7e-89
Medtr4g057530.1 | shugoshin protein | HC | chr4:21031670-2102831...    80   3e-15

>Medtr1g090657.1 | shugoshin protein | HC | chr1:40597343-40600372 |
           20130731
          Length = 397

 Score =  335 bits (860), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 212/411 (51%), Positives = 269/411 (65%), Gaps = 32/411 (7%)

Query: 4   GAGIFLDSETARVGAVGVAGQKAKRGK--MVKGDSVSV-GTAQKKKLADITNRDQ-QQRP 59
           GA IF DS+     A    GQ+ KRGK    KGDSVSV G AQKK LADITN+ Q +  P
Sbjct: 3   GASIFHDSDLQPPVAETGPGQQPKRGKGKFFKGDSVSVVGAAQKKILADITNKGQPKHHP 62

Query: 60  XXXXXXXXXXXXXXPGITSDQLLNENAMLMKVLANRNAVIESCKAELQKSQTNYLRLRKE 119
                           ++ D +LNEN M+ K+L  RN VIES KAELQK Q+N+ +LRK+
Sbjct: 63  APVLPPPSTD------VSFDLILNENEMMRKLLGQRNVVIESYKAELQKCQSNFQKLRKQ 116

Query: 120 NSELALTNTHIMAELNSSKQRLRELQHELGMKNGMLRAMKLELTAKEHTEKSNREIEANE 179
           N+ELAL NT +  E+++S+Q +RELQ EL  KNG+L+AMKL     +H    NR    ++
Sbjct: 117 NAELALANTQMTREISASRQMVRELQLELACKNGILKAMKLTSMENDH----NRAKLIHD 172

Query: 180 VKASHSKELDQTLQEDAREK------TKRKRVSRSQSSAPAVIKQVKSIEKVENKRYSLR 233
           + A  SK+ DQ  +E+ + +       KRKR+S+SQSSAPAV KQVKS EKV+++R S R
Sbjct: 173 IVADESKQSDQKFEEENKGEEQNKGEAKRKRMSKSQSSAPAV-KQVKS-EKVDSQRCSSR 230

Query: 234 RQSAGLQAEKSQPTEDSEVAQVKYDVAHLQENLENENGPTS--SEVHEEAKEDAESSGPA 291
           R+SA L+A KS  TE  EV ++KYD +H  E+L NEN  TS  S+VH+ A +D ESSGPA
Sbjct: 231 RKSAALKAGKSGSTE--EVFEIKYDASHPLESLANENESTSLGSKVHDVAGQDTESSGPA 288

Query: 292 NTEQVHAKKNIENKRQSLRRQSSMFKPENLEPTEDFFEVDDAKFPV--LCATDMSEQSHP 349
           NTEQV AK+N+ENKR SLRRQS++F+PE  EP EDFF+ +D KF V  LC  DMSE S P
Sbjct: 289 NTEQVLAKRNVENKRHSLRRQSALFRPEKPEPAEDFFDTEDPKFEVSNLC-DDMSE-SLP 346

Query: 350 TTSSVTSGQENNTCVYDPREIXXXXXXXXXXXXAVKVVSYKEIPVNVKMRR 400
           T SS TS  ENN C  DP+              AVKVVSY+E+P+N+KMRR
Sbjct: 347 TASSETS--ENNACTLDPQVTRRSSIGRPSRRSAVKVVSYREVPINLKMRR 395


>Medtr1g090657.2 | shugoshin protein | HC | chr1:40597343-40600372 |
           20130731
          Length = 381

 Score =  325 bits (832), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 209/411 (50%), Positives = 263/411 (63%), Gaps = 48/411 (11%)

Query: 4   GAGIFLDSETARVGAVGVAGQKAKRGK--MVKGDSVSV-GTAQKKKLADITNRDQ-QQRP 59
           GA IF DS+     A    GQ+ KRGK    KGDSVSV G AQKK LADITN+ Q +  P
Sbjct: 3   GASIFHDSDLQPPVAETGPGQQPKRGKGKFFKGDSVSVVGAAQKKILADITNKGQPKHHP 62

Query: 60  XXXXXXXXXXXXXXPGITSDQLLNENAMLMKVLANRNAVIESCKAELQKSQTNYLRLRKE 119
                                   EN M+ K+L  RN VIES KAELQK Q+N+ +LRK+
Sbjct: 63  AP----------------------ENEMMRKLLGQRNVVIESYKAELQKCQSNFQKLRKQ 100

Query: 120 NSELALTNTHIMAELNSSKQRLRELQHELGMKNGMLRAMKLELTAKEHTEKSNREIEANE 179
           N+ELAL NT +  E+++S+Q +RELQ EL  KNG+L+AMKL     +H    NR    ++
Sbjct: 101 NAELALANTQMTREISASRQMVRELQLELACKNGILKAMKLTSMENDH----NRAKLIHD 156

Query: 180 VKASHSKELDQTLQEDAREK------TKRKRVSRSQSSAPAVIKQVKSIEKVENKRYSLR 233
           + A  SK+ DQ  +E+ + +       KRKR+S+SQSSAPAV KQVKS EKV+++R S R
Sbjct: 157 IVADESKQSDQKFEEENKGEEQNKGEAKRKRMSKSQSSAPAV-KQVKS-EKVDSQRCSSR 214

Query: 234 RQSAGLQAEKSQPTEDSEVAQVKYDVAHLQENLENENGPTS--SEVHEEAKEDAESSGPA 291
           R+SA L+A KS  TE  EV ++KYD +H  E+L NEN  TS  S+VH+ A +D ESSGPA
Sbjct: 215 RKSAALKAGKSGSTE--EVFEIKYDASHPLESLANENESTSLGSKVHDVAGQDTESSGPA 272

Query: 292 NTEQVHAKKNIENKRQSLRRQSSMFKPENLEPTEDFFEVDDAKFPV--LCATDMSEQSHP 349
           NTEQV AK+N+ENKR SLRRQS++F+PE  EP EDFF+ +D KF V  LC  DMSE S P
Sbjct: 273 NTEQVLAKRNVENKRHSLRRQSALFRPEKPEPAEDFFDTEDPKFEVSNLC-DDMSE-SLP 330

Query: 350 TTSSVTSGQENNTCVYDPREIXXXXXXXXXXXXAVKVVSYKEIPVNVKMRR 400
           T SS TS  ENN C  DP+              AVKVVSY+E+P+N+KMRR
Sbjct: 331 TASSETS--ENNACTLDPQVTRRSSIGRPSRRSAVKVVSYREVPINLKMRR 379


>Medtr4g057530.1 | shugoshin protein | HC | chr4:21031670-21028310 |
           20130731
          Length = 301

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 16/241 (6%)

Query: 38  SVGTAQKKKLADITNRDQQQRPXXXXXXXXXXXXXXPGITSDQLLNENAMLMKVLANRNA 97
           S+G   +K+L+DITN  Q                     +  QLL E A L+ +L++RN 
Sbjct: 12  SIGNLMRKRLSDITNSSQ---TIQQENHNNYNTLSLDNDSIQQLLKERANLINLLSDRNK 68

Query: 98  VIESCKAELQKSQTNYLRLRKENSELALTNTHIMAELNSSKQRLRELQHELGMKNGMLRA 157
           +IE   AELQ+ + +  +L+ +N  LA +N+ ++AELN  + +++ LQHEL  +  ++  
Sbjct: 69  MIERSGAELQRLRADMKKLQMQNWNLAQSNSLMLAELNLGRDKIKTLQHELLWRAALING 128

Query: 158 --MKLELTAKEHTEKSNREIEANEVKASHSKELDQTLQEDAR-----EK----TKRKRVS 206
              K++   +  TEK   + E N   +   +E ++ +Q+  R     EK    T+R+  S
Sbjct: 129 NTFKMQEKVEIDTEKVEIDTEKNASLSQLQEEDEKEVQQSPRISNDDEKQCCLTRRRVRS 188

Query: 207 RSQSSAPAVIKQVKSIEKVENKRYSLRRQSAGLQAEKSQPTED-SEVAQVKYDVAHLQEN 265
           RS  S+ A  K  KS EKV++ R SLRR SA  +    +P E+  E+   +Y +     N
Sbjct: 189 RSIGSSTASRKN-KSKEKVKDNRRSLRRHSAASKVHVHEPLENLFEIEDAQYAITQSGHN 247

Query: 266 L 266
           +
Sbjct: 248 I 248



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 5/103 (4%)

Query: 298 AKKNIENKRQSLRRQSSMFKPENLEPTEDFFEVDDAKFPVLCATDMSEQSHPTTSSVTSG 357
           +K+ +++ R+SLRR S+  K    EP E+ FE++DA++ +  +    + S P+  +   G
Sbjct: 202 SKEKVKDNRRSLRRHSAASKVHVHEPLENLFEIEDAQYAITQSGHNIKLSTPSVKT-ERG 260

Query: 358 QENNTCVYDPREIXXXXXXXXXXXXAVKVVSYKEIPVNVKMRR 400
           + ++     PR              A KV SYKE+P+NVKMRR
Sbjct: 261 ESSSLRNEAPRH----SFGRPLRRAAEKVPSYKEVPLNVKMRR 299