Miyakogusa Predicted Gene

Lj5g3v1697110.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1697110.2 Non Characterized Hit- tr|I1LCH7|I1LCH7_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,84.27,0,TRANSCRIPTION
INITIATION FACTOR IIH-RELATED,NULL; BSD,BSD; seg,NULL; BSD
domain-like,NULL; PH domain,CUFF.55744.2
         (583 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g090110.1 | TFIIH basal transcription factor complex subun...   927   0.0  
Medtr6g071555.1 | TFIIH basal transcription factor complex subun...   851   0.0  

>Medtr1g090110.1 | TFIIH basal transcription factor complex subunit,
           putative | HC | chr1:40358314-40346004 | 20130731
          Length = 586

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/585 (78%), Positives = 496/585 (84%), Gaps = 4/585 (0%)

Query: 1   MSSG--QVVKRAKYKTTVKGPGTPGILKLTQDKFVFKPNDPTSNNKLDVEFRFIKGHRVT 58
           MSS   QVVKRAKYK+TVK PGTPG++KLT+ K VFKPNDPTSNNKLDV+FR IK  + T
Sbjct: 1   MSSSVQQVVKRAKYKSTVKDPGTPGVIKLTRQKVVFKPNDPTSNNKLDVDFRLIKSQKNT 60

Query: 59  KEGS-KQPLLNLTHAQGSYIFELESFPDLHVCRELVGNALSKHVEAPKVTTEEQLSTAEL 117
           KEGS K P LNL H+QGSYIFE ESF DLHVCRE     +SK VEAPKV ++EQLSTAE+
Sbjct: 61  KEGSTKPPWLNLVHSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEM 120

Query: 118 TLRLKLLQEDSKLQKLFKELVAGGKLTESEFWATKKKMLDQDESRKSKQRIGFKNSLIFD 177
           TLR+KLL EDSKL+K+  ELV   KLTESEFWATKKK+LDQDESRK KQRIGFKNSLIFD
Sbjct: 121 TLRMKLLGEDSKLKKIHMELVMSDKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFD 180

Query: 178 TKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFFNFVPKKMTEVDFWNKYFKAEYLHS 237
           TKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAF NFVP KM+EVDFWNKYFKAEYLHS
Sbjct: 181 TKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYLHS 240

Query: 238 TKNIIXXXXXXXXXXXXXVFLKDDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGI 297
           TKN I             VFLKDDEILE EARKKVRRVDPTLDMEADQGDDYTHLPDHGI
Sbjct: 241 TKNAIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGI 300

Query: 298 FRDGSKEIPEAQHPLYRRTLLQDLNRQGAVVLEGKTLDMETEQPRTVAEVIARRQQESDG 357
           FRDGSKE  EAQ+ LYRRTLLQDLNRQ  VVLEGKTLD++ E PRT  E +ARR+ ESDG
Sbjct: 301 FRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTAVEALARRKHESDG 360

Query: 358 VREEERRNRISKMTQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLAGMEQT 417
           V  EERRNRISKM QIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSL+G E+ 
Sbjct: 361 VV-EERRNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLSGKEKI 419

Query: 418 RCSLGSEEAYGSLRASISKIKAKGLKDPLLSPEVALKVLNGLTKNISSTKSHLGKNSQES 477
           RC+LGSEEAYGSLR SIS IK  GL+DPLLS EVA KVL+ LTKNISSTKS+LGK+SQES
Sbjct: 420 RCNLGSEEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLGKSSQES 479

Query: 478 VLDLLPSTTKEKLLDHWVCSQELLRHFWSSYPITAQNLISKTARLKEAISQIYSKLEEIK 537
           VLD+LP+TTKEKLLDHWVCSQELLRHFWSSYP+T Q+L+ K  RLK+AISQIYSKLEEIK
Sbjct: 480 VLDILPNTTKEKLLDHWVCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIYSKLEEIK 539

Query: 538 VSAQSDLRHQVSLIVHPMQQXXXXXXXXXXXXIKKRNARGQKPNG 582
           VSA+SDLRHQVSL+VHPMQQ            I +RNA+G K NG
Sbjct: 540 VSAKSDLRHQVSLVVHPMQQALDAALLHYDADITRRNAKGSKRNG 584


>Medtr6g071555.1 | TFIIH basal transcription factor complex subunit,
           putative | HC | chr6:26537866-26536124 | 20130731
          Length = 580

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/586 (73%), Positives = 474/586 (80%), Gaps = 12/586 (2%)

Query: 1   MSSG--QVVKRAKYKTTVKGPGTPGILKLTQDKFVFKPNDPTSNNKLDVEFRFIKGHRVT 58
           MSS   QVVKRAKYK+TVK PGTPG++KLT+ K VFKPNDPTSNNKLDV+FR IK  + T
Sbjct: 1   MSSSVQQVVKRAKYKSTVKDPGTPGVIKLTRPKLVFKPNDPTSNNKLDVDFRLIKSQKNT 60

Query: 59  KEGS-KQPLLNLTHAQGSYIFELESFPDLHVCRELVGNALSKHVEAPKVTTEEQLSTAEL 117
           KEGS KQ  L L H+QGSYIFE ESF DLHVCRE     +SK VEAPKV ++EQLSTAE+
Sbjct: 61  KEGSNKQTWLKLLHSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEM 120

Query: 118 TLRLKLLQEDSKLQKLFKELVAGGKLTESEFWATKKKMLDQDESRKSKQRIGFKNSLIFD 177
           TLR+KLL EDSKL+K+ KELV   KLTESEFWATKKK+LDQDESRK  QRIGFKN LIFD
Sbjct: 121 TLRIKLLGEDSKLKKIHKELVMSDKLTESEFWATKKKLLDQDESRKLTQRIGFKNCLIFD 180

Query: 178 TKPT-SDGRINQVKFQLTPEIKYQIFALKPAVHQAFFNFVPKKMTEVDFWNKYFKAEYLH 236
           TKPT SDGRIN VKFQLT EIKYQIFALKPA+HQAF NFVP  M+EVDFWNKYFKAEYLH
Sbjct: 181 TKPTTSDGRINIVKFQLTREIKYQIFALKPAIHQAFLNFVPSNMSEVDFWNKYFKAEYLH 240

Query: 237 STKNIIXXXXXXXXXXXXXVFLKDDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHG 296
           STKN I             VFLKDDEIL+ EARKKVRR+DPTLDMEADQGDDYTHLPDHG
Sbjct: 241 STKNAIAAAAEAAEDEDLAVFLKDDEILKNEARKKVRRIDPTLDMEADQGDDYTHLPDHG 300

Query: 297 IFRDGSKEIPEAQHPLYRRTLLQDLNRQGAVVLEGKTLDMETEQPRTVAEVIARRQQESD 356
           IFRDG KE  EAQ+ LYRRTLLQDLNRQ  VVLEGKTLD++ E PRT  EV+ARR+ ESD
Sbjct: 301 IFRDGCKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTEVEVLARRKHESD 360

Query: 357 GVREEERRNRISKMTQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLAGMEQ 416
           GV  EERRNRISK  QIEDLQAQD+HPF PLCIKDPRDYFDSQQAN VKT D+SLA  E+
Sbjct: 361 GV-VEERRNRISKTAQIEDLQAQDNHPFVPLCIKDPRDYFDSQQANVVKTFDESLADKEK 419

Query: 417 TRCSLGSEEAYGSLRASISKIKAKGLKDPLLSPEVALKVLNGLTKNISSTKSHLGKNSQE 476
            R +LGSEEAY SLR SIS IK  GL+DPLLS +VA KVL  L K+ISST       ++E
Sbjct: 420 IRRNLGSEEAYDSLRESISNIKTMGLRDPLLSHKVAFKVLTVLNKSISST-------TKE 472

Query: 477 SVLDLLPSTTKEKLLDHWVCSQELLRHFWSSYPITAQNLISKTARLKEAISQIYSKLEEI 536
            VLD+LP++TKEKLLDHWVCSQELLRHFWSSYP++ Q+L+SK  RLK+AISQIYSKLEEI
Sbjct: 473 CVLDILPNSTKEKLLDHWVCSQELLRHFWSSYPVSTQSLVSKATRLKDAISQIYSKLEEI 532

Query: 537 KVSAQSDLRHQVSLIVHPMQQXXXXXXXXXXXXIKKRNARGQKPNG 582
           KVSAQS+LR QVSL+V PMQQ            I++RN +G KPNG
Sbjct: 533 KVSAQSNLRDQVSLVVDPMQQALDAALLHYDADIRRRNDKGSKPNG 578