Miyakogusa Predicted Gene

Lj5g3v1696780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1696780.1 tr|E8ZCI3|E8ZCI3_HELAN Auxin binding protein
(Fragment) OS=Helianthus annuus GN=abp1 PE=4
SV=1,77.59,4e-19,AUXINBINDNGP,Auxin-binding protein; RmlC-like
cupins,RmlC-like cupin domain; Auxin_BP,Auxin-binding ,CUFF.55711.1
         (191 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g089810.1 | susceptible endoplasmic reticulum auxin-bindin...   306   9e-84

>Medtr1g089810.1 | susceptible endoplasmic reticulum auxin-binding
           protein | HC | chr1:40200404-40204661 | 20130731
          Length = 194

 Score =  306 bits (783), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 142/163 (87%), Positives = 153/163 (93%)

Query: 29  ITELPLVRNISEIPQDNYGRPGLSHITVAGSILHGLKEVEVWLQTFSPGTRTPIHRHSCE 88
           I  LPLVRNISEIPQD+YGRPGLSH+TVAGSILHG+KEVEVWLQTFSPGT TPIHRHSCE
Sbjct: 32  IAGLPLVRNISEIPQDSYGRPGLSHVTVAGSILHGMKEVEVWLQTFSPGTHTPIHRHSCE 91

Query: 89  EVFIVLKGSGTLYLASNSHGKCPGQPQEHFVFPNSTFHIPLNDAHQLWNTNEHEDLQVLV 148
           EVFIV KGSGTLY+AS SHGK PG+P+EHF+FPNSTFHIP+NDAHQLWNTNEHEDLQVLV
Sbjct: 92  EVFIVQKGSGTLYIASYSHGKYPGKPEEHFIFPNSTFHIPVNDAHQLWNTNEHEDLQVLV 151

Query: 149 IISRPPVKVFIYDDWSMPHIAARLKFPYYWDEHCYQDTPKDEL 191
           IISRPPVKVF+YDDWSMPH AARLKFPYYWDE C Q++ KDEL
Sbjct: 152 IISRPPVKVFVYDDWSMPHSAARLKFPYYWDEQCSQESSKDEL 194