Miyakogusa Predicted Gene

Lj5g3v1671380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1671380.1 tr|A9T2K5|A9T2K5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_167707,69.32,5e-19,zf-U1,Zinc finger, U1-C type;
ZF_MATRIN,Zinc finger, C2H2-type matrin; seg,NULL; C2H2 and C2HC zinc
,CUFF.55692.1
         (210 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g088990.1 | U1 small nuclear C-like ribonucleoprotein | HC...   126   1e-29
Medtr7g107640.1 | U1 small nuclear C-like ribonucleoprotein | HC...   125   3e-29

>Medtr1g088990.1 | U1 small nuclear C-like ribonucleoprotein | HC
          | chr1:39976870-39974731 | 20130731
          Length = 207

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/72 (80%), Positives = 59/72 (81%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLXX 60
          MPRYYCD+CDTYLTHDSPSVRKQHNSGYKHKANVR YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1  MPRYYCDFCDTYLTHDSPSVRKQHNSGYKHKANVRLYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61 XXXXXXXXXXYN 72
                    YN
Sbjct: 61 AAAFQAVGVAYN 72


>Medtr7g107640.1 | U1 small nuclear C-like ribonucleoprotein | HC
          | chr7:43910300-43912831 | 20130731
          Length = 222

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/58 (96%), Positives = 56/58 (96%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHL 58
          MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVR YY QFEEQQTQSLIDQRIKEHL
Sbjct: 1  MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRQYYLQFEEQQTQSLIDQRIKEHL 58