Miyakogusa Predicted Gene

Lj5g3v1669360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1669360.1 tr|B9I9X0|B9I9X0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_572749 PE=4
SV=1,54.61,2e-17,seg,NULL,CUFF.55686.1
         (138 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g088970.1 | transmembrane protein, putative | HC | chr1:39...   104   2e-23

>Medtr1g088970.1 | transmembrane protein, putative | HC |
           chr1:39956709-39955720 | 20130731
          Length = 165

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/138 (47%), Positives = 82/138 (59%), Gaps = 2/138 (1%)

Query: 1   MAPFWSFSAVLLALMAFTCPLALASQQKNMHVSTISAAPTTLPGCPLLSPTLSPDIEPLF 60
           MA FWSFS++ LAL+A  C LALAS  K MH+STISAAPTTLP  PL SP +SPD+EPLF
Sbjct: 1   MASFWSFSSIFLALIACNCSLALASA-KTMHISTISAAPTTLPEAPLFSPAMSPDMEPLF 59

Query: 61  PTPGKDAFXXXXXXXXXXXXXXXXXXXDITGHQGH-GLXXXXXXXXXXXXXXXQGASLPL 119
           P+PG  A+                   DI+ HQG                   QG+SL +
Sbjct: 60  PSPGGVAYSPSDSSLPTIPSSPSPPNPDISTHQGPVSAFPPSESMPPALGPSSQGSSLLM 119

Query: 120 YSILQLVMLVICIMQLYG 137
           YSIL L ++++CI+QL+G
Sbjct: 120 YSILHLAIMLVCIIQLHG 137