Miyakogusa Predicted Gene

Lj5g3v1631040.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1631040.1 Non Characterized Hit- tr|D8SPD6|D8SPD6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,53.25,6e-18,MutL_C,MutL, C-terminal, dimerisation;
DNA_mis_repair,DNA mismatch repair protein, C-terminal; DNA
M,CUFF.55655.1
         (669 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g088720.1 | DNA mismatch repair protein PMS2, putative | H...   949   0.0  
Medtr5g024250.1 | DNA mismatch repair protein, carboxy-terminal ...    64   6e-10

>Medtr1g088720.1 | DNA mismatch repair protein PMS2, putative | HC |
           chr1:39690274-39683612 | 20130731
          Length = 933

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/671 (71%), Positives = 546/671 (81%), Gaps = 16/671 (2%)

Query: 1   MPKVGKLVNELYKSANSKQYPIAIMNFTVPTRAFDVNVTPDKRKIFFSEETALLQALREG 60
           MPK+GKLVNELY+SANSKQYPIAIMNFTVPT+A+DVNVTPDKRKIFFSEET+LLQALREG
Sbjct: 275 MPKIGKLVNELYRSANSKQYPIAIMNFTVPTKAYDVNVTPDKRKIFFSEETSLLQALREG 334

Query: 61  LQEIYSSSDVCYSVNEIMQPAVNEDCVELRSTKRKSLVVEKPPSLNDNVPQEEHYSECKN 120
           LQ+IYS  +  Y+VNE M+PA  EDC ELRS+++KS +V KP SLN  +PQEEHY+E   
Sbjct: 335 LQQIYSPDNASYAVNEFMRPAAKEDCFELRSSQKKSPIVTKPASLNVAIPQEEHYTEFNT 394

Query: 121 GITSHDEYNANCNKDSVSHIGHKEKHITDSKNASESVNDDQCSHSEEGLIHENDGSLMGQ 180
              S D+ N++ N  S+S   HKEKH TDS NASES + D  SH EEGLI E+ G LMG+
Sbjct: 395 ASISRDKNNSDRNGGSISLNEHKEKHTTDSNNASESDDGDLFSHVEEGLIRESGGGLMGK 454

Query: 181 EFTLRAHTTSKDYNCRRRL---ECASSLQGTLVSRAVESGGTSNQYSYSHSRHVQSTLNG 237
           EFTLRAH T K     R++     A   Q TLVSR VESGG+S++YS   SRHVQSTLN 
Sbjct: 455 EFTLRAHKTLKGDKSGRQMASTHIALRNQATLVSRTVESGGSSDKYSSDSSRHVQSTLNN 514

Query: 238 FVSVNKRNRDSSITALSEVPVLRNQASHYQLKTAKTETRDLITRSSVNFDQVGGTSKLSK 297
           FV+V+KR RD  ITALSEVPVLRNQA   +LKT  TET DLITRS ++ DQ+  TS  S+
Sbjct: 515 FVAVSKRKRDDIITALSEVPVLRNQAPQCKLKTVNTETNDLITRSYLHLDQINETSTPSE 574

Query: 298 IESLQQLKPDNILHINEYSVSLRGDTTDRESEMELDQENSASLADSAPATPSSNDLINTS 357
           IE+LQQ  PD I H +  S+S   D+TDRE  M+  QEN   LAD+A  TPSSN+LI+T+
Sbjct: 575 IENLQQRNPDGINHSSVNSLSFIEDSTDREPNMKPHQENKTHLADTASVTPSSNNLIDTT 634

Query: 358 EHVLVSDPPLHSSPVCLDSPKSSGQKICSNMHFSFQDLKNKREKRLSLMRSSKYKCGKAN 417
           + VL             DSPKSSGQKI SNM FSFQDLK++REKRLSL++SSKY+ GKAN
Sbjct: 635 DDVL-------------DSPKSSGQKIFSNMQFSFQDLKSRREKRLSLVQSSKYRYGKAN 681

Query: 418 VKSHYMAATLELSQPEIEQQKERILAAAATELERFFKKEDFSRMKVIGQFNLGFIIGKLD 477
            KSHY AATLELSQP+IEQQKER+LAAAATELER FKKE FSRMKVIGQFNLGFIIGKLD
Sbjct: 682 GKSHYTAATLELSQPDIEQQKERVLAAAATELERLFKKEYFSRMKVIGQFNLGFIIGKLD 741

Query: 478 HDLFIVDQHAADEKYNFERLSQSTILNQQPLIRPIRLELSPEEEIVASMHMDIIRKNGFT 537
            DLFIVDQHAADEKYNFE LSQSTILNQQPL+RPIRLELSPEEEIVAS+HMDIIRKNGFT
Sbjct: 742 QDLFIVDQHAADEKYNFECLSQSTILNQQPLLRPIRLELSPEEEIVASIHMDIIRKNGFT 801

Query: 538 LEEDPNAPPGCRYKLKSVPFSKNTMFGIEDVKELISSLSDGDGDVECSTIGSYKTDTSDS 597
           LEED NAPPGCRYKLKSVP+SKNTMFG+EDVK+LIS+LSDGDG  ECS IGSY+ D+SDS
Sbjct: 802 LEEDLNAPPGCRYKLKSVPYSKNTMFGVEDVKDLISTLSDGDGHGECSIIGSYRQDSSDS 861

Query: 598 ICPSRVRAMLASRACRSSIMIGDALGRNEMQKVVEHLAGLKSPWNCPHGRPTMRHLVDLT 657
           ICP RVRAMLASRACRSSIMIGDALGRNEMQK++EHLA LKSPWNCPHGRPTMRHLVDLT
Sbjct: 862 ICPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLT 921

Query: 658 KLHQMSEQPMQ 668
           K+H+ SE  MQ
Sbjct: 922 KIHKRSELIMQ 932


>Medtr5g024250.1 | DNA mismatch repair protein, carboxy-terminal
            domain protein | HC | chr5:9761916-9752005 | 20130731
          Length = 1232

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 55/226 (24%)

Query: 462  KVIGQFNLGFIIGKLDHDLFIVDQHAADEKYNFERLSQSTILNQ----------QPLIRP 511
            KV+ Q +  FI       L ++DQHA DE+   E L Q  +  +          Q L+ P
Sbjct: 994  KVLHQVDKKFIPIMAGRTLAVIDQHAGDERIRLEDLRQKVLSGEAKAITYLDAEQELVLP 1053

Query: 512  ---IRLELSPEEEI-----VASMH----------MDIIRKNGFTLEEDPNAPPGCRYKLK 553
                +L  S  E+I     + ++H          +D++ +   T+             L 
Sbjct: 1054 EIGYQLLHSYREQIKDWGWICNIHTQNSESFRRNLDLLNRQQMTI------------ALV 1101

Query: 554  SVPFSKNTMFGIEDVKELISSLSDGDGDVECSTIGSYKTDTSDSICPSRVRAMLASRACR 613
            +VP          D+ E +  L+D DG              S ++ PS VR +L S++CR
Sbjct: 1102 AVPCILGVNLNDVDLLEFLQQLADTDG--------------SSTMPPSVVR-LLNSKSCR 1146

Query: 614  SSIMIGDALGRNEMQKVVEHLAGLKSPWNCPHGRPTMRHLVDLTKL 659
             +IM GD+L  +E   +VE L      + C HGRPT   LV+L  L
Sbjct: 1147 GAIMFGDSLLPSECSLLVEELKHTSLCFQCAHGRPTTVPLVNLEAL 1192