Miyakogusa Predicted Gene

Lj5g3v1631030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1631030.1 Non Characterized Hit- tr|A5APC0|A5APC0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,85.71,0,no
description,NULL; LSM,Ribonucleoprotein LSM domain; SMALL NUCLEAR
RIBONUCLEOPROTEIN SM,NULL; snRN,CUFF.55657.1
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g058420.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...   184   2e-47
Medtr8g058537.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...   184   2e-47
Medtr7g108700.1 | u6 snRNA-associated-like-Smprotein | HC | chr7...   183   4e-47
Medtr8g091620.3 | u6 snRNA-associated-like-Smprotein | HC | chr8...   183   5e-47
Medtr8g091620.2 | u6 snRNA-associated-like-Smprotein | HC | chr8...   183   5e-47
Medtr8g091620.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...   183   5e-47
Medtr1g088710.1 | u6 snRNA-associated-like-Smprotein | HC | chr1...   140   5e-34
Medtr8g092200.1 | small nuclear ribonucleoprotein | HC | chr8:38...    57   4e-09

>Medtr8g058420.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:20197505-20199390 | 20130731
          Length = 146

 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 89/92 (96%), Gaps = 1/92 (1%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK+G  FWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQEETKTRTDRKPP 92
          IRGNTIKYLRVPDEVIDKVQEE K+RTDRKPP
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPP 91


>Medtr8g058537.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:20159925-20158080 | 20130731
          Length = 146

 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 89/92 (96%), Gaps = 1/92 (1%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK+G  FWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQEETKTRTDRKPP 92
          IRGNTIKYLRVPDEVIDKVQEE K+RTDRKPP
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPP 91


>Medtr7g108700.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr7:44281904-44284914 | 20130731
          Length = 150

 Score =  183 bits (465), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 89/92 (96%), Gaps = 1/92 (1%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK+G  FWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQEETKTRTDRKPP 92
          IRGNTIKYLRVPDEVIDKVQEE K+RTDRKPP
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPP 91


>Medtr8g091620.3 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:38229412-38226145 | 20130731
          Length = 150

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 89/92 (96%), Gaps = 1/92 (1%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK+G  FWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQEETKTRTDRKPP 92
          IRGNTIKYLRVPDEVIDKVQEE K+RTDRKPP
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPP 91


>Medtr8g091620.2 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:38229412-38226145 | 20130731
          Length = 150

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 89/92 (96%), Gaps = 1/92 (1%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK+G  FWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQEETKTRTDRKPP 92
          IRGNTIKYLRVPDEVIDKVQEE K+RTDRKPP
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPP 91


>Medtr8g091620.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:38229412-38226145 | 20130731
          Length = 150

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 89/92 (96%), Gaps = 1/92 (1%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK+G  FWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQEETKTRTDRKPP 92
          IRGNTIKYLRVPDEVIDKVQEE K+RTDRKPP
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEE-KSRTDRKPP 91


>Medtr1g088710.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr1:39681694-39680516 | 20130731
          Length = 106

 Score =  140 bits (352), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 67/75 (89%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECY 60
          M PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREV CTS +G  FW MP+CY
Sbjct: 1  MFPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVFCTSNDGDRFWYMPKCY 60

Query: 61 IRGNTIKYLRVPDEV 75
          IRGNTIKYLR+P  +
Sbjct: 61 IRGNTIKYLRLPPSL 75


>Medtr8g092200.1 | small nuclear ribonucleoprotein | HC |
          chr8:38530552-38528326 | 20130731
          Length = 131

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECYI 61
          +P+ LL  A GH + VELK+GE Y G+++ C+   N  L  +  T+K+G +  ++   +I
Sbjct: 7  IPVKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65

Query: 62 RGNTIKYLRVPD 73
          RG+ ++++ +PD
Sbjct: 66 RGSKVRFMVIPD 77