Miyakogusa Predicted Gene

Lj5g3v1627950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1627950.1 tr|B6U636|B6U636_MAIZE Catalytic/ oxidoreductase,
acting on NADH or NADPH OS=Zea mays PE=4
SV=1,51.04,1e-17,Complex1_LYR,Complex 1 LYR protein;
coiled-coil,NULL,CUFF.55641.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g088550.1 | complex 1 protein, LYR family protein | HC | c...   168   1e-42
Medtr1g088550.2 | complex 1 protein, LYR family protein | HC | c...   168   1e-42
Medtr1g088550.3 | complex 1 protein, LYR family protein | HC | c...   168   1e-42

>Medtr1g088550.1 | complex 1 protein, LYR family protein | HC |
           chr1:39597195-39593054 | 20130731
          Length = 106

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 95/105 (90%)

Query: 3   MARGEVLSAYRAVLKATRKTFAGDGVMLKGSAAEVRKKFEENRNVSSEEEIQKLLGEASE 62
           M +G+VLSAYRAVLKATRK+F GD  MLKGSAAEVRK+FEE+RNV+SE EIQKLL +A+E
Sbjct: 1   MTKGQVLSAYRAVLKATRKSFVGDHHMLKGSAAEVRKQFEESRNVTSEAEIQKLLAQANE 60

Query: 63  ASHFITNMLVQAQLNSDAGSYVMKPGKEHAGATLEIPTEEIIRKS 107
           A+ F++ MLVQA LN+DAGSYV+KP KEHAGATLEIP+EEIIRKS
Sbjct: 61  AAEFVSTMLVQAPLNNDAGSYVVKPEKEHAGATLEIPSEEIIRKS 105


>Medtr1g088550.2 | complex 1 protein, LYR family protein | HC |
           chr1:39597279-39593019 | 20130731
          Length = 106

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 95/105 (90%)

Query: 3   MARGEVLSAYRAVLKATRKTFAGDGVMLKGSAAEVRKKFEENRNVSSEEEIQKLLGEASE 62
           M +G+VLSAYRAVLKATRK+F GD  MLKGSAAEVRK+FEE+RNV+SE EIQKLL +A+E
Sbjct: 1   MTKGQVLSAYRAVLKATRKSFVGDHHMLKGSAAEVRKQFEESRNVTSEAEIQKLLAQANE 60

Query: 63  ASHFITNMLVQAQLNSDAGSYVMKPGKEHAGATLEIPTEEIIRKS 107
           A+ F++ MLVQA LN+DAGSYV+KP KEHAGATLEIP+EEIIRKS
Sbjct: 61  AAEFVSTMLVQAPLNNDAGSYVVKPEKEHAGATLEIPSEEIIRKS 105


>Medtr1g088550.3 | complex 1 protein, LYR family protein | HC |
           chr1:39597279-39594815 | 20130731
          Length = 106

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 95/105 (90%)

Query: 3   MARGEVLSAYRAVLKATRKTFAGDGVMLKGSAAEVRKKFEENRNVSSEEEIQKLLGEASE 62
           M +G+VLSAYRAVLKATRK+F GD  MLKGSAAEVRK+FEE+RNV+SE EIQKLL +A+E
Sbjct: 1   MTKGQVLSAYRAVLKATRKSFVGDHHMLKGSAAEVRKQFEESRNVTSEAEIQKLLAQANE 60

Query: 63  ASHFITNMLVQAQLNSDAGSYVMKPGKEHAGATLEIPTEEIIRKS 107
           A+ F++ MLVQA LN+DAGSYV+KP KEHAGATLEIP+EEIIRKS
Sbjct: 61  AAEFVSTMLVQAPLNNDAGSYVVKPEKEHAGATLEIPSEEIIRKS 105