Miyakogusa Predicted Gene

Lj5g3v1627890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1627890.1 Non Characterized Hit- tr|I3SBV7|I3SBV7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,99.13,0,seg,NULL;
Ribosomal_L22e,Ribosomal protein L22e; 60S RIBOSOMAL PROTEIN
L22,Ribosomal protein L22e,CUFF.55660.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g088450.1 | ribosomal L22e family protein | HC | chr1:3955...   193   3e-50
Medtr1g083430.2 | ribosomal L22e family protein | HC | chr1:3713...   179   6e-46
Medtr1g083430.1 | ribosomal L22e family protein | HC | chr1:3713...   179   6e-46
Medtr7g112770.1 | ribosomal L22e family protein | HC | chr7:4640...   171   2e-43
Medtr3g048870.1 | ribosomal L22e family protein | LC | chr3:1815...    54   4e-08

>Medtr1g088450.1 | ribosomal L22e family protein | HC |
           chr1:39552080-39550264 | 20130731
          Length = 119

 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/115 (83%), Positives = 98/115 (85%)

Query: 1   MSGAKGKKKATSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSK 60
           MSG KGKKK TSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTV+REKSK
Sbjct: 1   MSGVKGKKKGTSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKSK 60

Query: 61  IPVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYFNIAENEG 115
           I VTSDSNFS              HNVRDWLRVIASNKDRN+YELRYFNIAENEG
Sbjct: 61  ITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNIYELRYFNIAENEG 115


>Medtr1g083430.2 | ribosomal L22e family protein | HC |
           chr1:37130720-37132909 | 20130731
          Length = 125

 Score =  179 bits (453), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 95/115 (82%), Gaps = 1/115 (0%)

Query: 2   SGAKGKKKAT-SFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSK 60
           +G+KGKKK   +F IDCAKPVEDKIMDIASLEKFLQERIKVGGK GALGD+VTVSREKSK
Sbjct: 7   AGSKGKKKGVITFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKPGALGDAVTVSREKSK 66

Query: 61  IPVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYFNIAENEG 115
           I VTSDSNFS              HNVRDWLRVIASNKDRNVYELRYFNIAENEG
Sbjct: 67  IAVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEG 121


>Medtr1g083430.1 | ribosomal L22e family protein | HC |
           chr1:37130720-37132909 | 20130731
          Length = 125

 Score =  179 bits (453), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 95/115 (82%), Gaps = 1/115 (0%)

Query: 2   SGAKGKKKAT-SFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSK 60
           +G+KGKKK   +F IDCAKPVEDKIMDIASLEKFLQERIKVGGK GALGD+VTVSREKSK
Sbjct: 7   AGSKGKKKGVITFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKPGALGDAVTVSREKSK 66

Query: 61  IPVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYFNIAENEG 115
           I VTSDSNFS              HNVRDWLRVIASNKDRNVYELRYFNIAENEG
Sbjct: 67  IAVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEG 121


>Medtr7g112770.1 | ribosomal L22e family protein | HC |
           chr7:46406188-46408451 | 20130731
          Length = 124

 Score =  171 bits (432), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 88/104 (84%)

Query: 12  SFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSKIPVTSDSNFSX 71
           +F IDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSV+V+REKSKI VTSDSNFS 
Sbjct: 17  TFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVSVTREKSKITVTSDSNFSK 76

Query: 72  XXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYFNIAENEG 115
                        HNVRDWLRVIASNKDR++YELRYFNIAENEG
Sbjct: 77  RYLKYLTKKYLKKHNVRDWLRVIASNKDRSIYELRYFNIAENEG 120


>Medtr3g048870.1 | ribosomal L22e family protein | LC |
          chr3:18150002-18149252 | 20130731
          Length = 102

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 2/57 (3%)

Query: 11 TSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSKIPVTSDS 67
          +SFVI+ A PV+DKI+DIASLEKFLQERI++      L   + V+R +S++  T+ S
Sbjct: 2  SSFVINYANPVKDKILDIASLEKFLQERIRLVLSVIPL--MLLVTRARSRLLQTAIS 56