Miyakogusa Predicted Gene

Lj5g3v1616850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1616850.1 tr|Q9FSQ5|Q9FSQ5_ORYSA H0423H10.8 protein
OS=Oryza sativa GN=H0423H10.8 PE=4
SV=2,75,2e-19,CAMSAP_CH,Calmodulin-regulated spectrin-associated
protein, CH domain; MICROTUBULE-ASSOCIATED PROTEI,CUFF.55633.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0036s0210.1 | RP/EB family microtubule-associated protein |...   106   4e-24
Medtr4g108330.1 | RP/EB family microtubule-associated protein | ...   105   1e-23
Medtr5g016520.1 | RP/EB family microtubule-associated protein | ...    93   4e-20
Medtr2072s0010.1 | microtubule-associated protein RP/EB family p...    82   8e-17

>Medtr0036s0210.1 | RP/EB family microtubule-associated protein |
          HC | scaffold0036:80265-85368 | 20130731
          Length = 274

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 57/70 (81%)

Query: 1  MLTTFILRIILVCSHIEEAASGDVQCQMIDMTHPRVVPMHKVNFDAKMEYDKIQNYKILQ 60
          +L+    R+ L  S IEEAASG VQCQM+DMT+P VVPMHKVNFDAK EYD IQNYK+LQ
Sbjct: 19 ILSWINKRLQLNLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKSEYDMIQNYKVLQ 78

Query: 61 DVFNKLKIDK 70
          DVFNKLKI K
Sbjct: 79 DVFNKLKIAK 88


>Medtr4g108330.1 | RP/EB family microtubule-associated protein |
          HC | chr4:44937960-44942067 | 20130731
          Length = 290

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 53/60 (88%)

Query: 11 LVCSHIEEAASGDVQCQMIDMTHPRVVPMHKVNFDAKMEYDKIQNYKILQDVFNKLKIDK 70
          L  S IE+AASG VQCQM+D+TH  VVPMHKVNFDAK EYDKIQNYK+LQDVFNKLKIDK
Sbjct: 29 LNLSRIEDAASGAVQCQMMDVTHQGVVPMHKVNFDAKTEYDKIQNYKVLQDVFNKLKIDK 88


>Medtr5g016520.1 | RP/EB family microtubule-associated protein |
          HC | chr5:5934758-5937281 | 20130731
          Length = 333

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/57 (71%), Positives = 46/57 (80%)

Query: 14 SHIEEAASGDVQCQMIDMTHPRVVPMHKVNFDAKMEYDKIQNYKILQDVFNKLKIDK 70
          S +EEA SG V CQ++D  HP  VPMHKVNFDAK EY+ IQNYK+LQDVFNKLKI K
Sbjct: 32 SKVEEACSGAVHCQLLDAAHPGTVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLKITK 88


>Medtr2072s0010.1 | microtubule-associated protein RP/EB family
          protein | HC | scaffold2072:460-212 | 20130731
          Length = 52

 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 44/52 (84%)

Query: 19 AASGDVQCQMIDMTHPRVVPMHKVNFDAKMEYDKIQNYKILQDVFNKLKIDK 70
          AASG VQ QM+DMT+P VVPM+KVNFDAK EYD IQNYK+LQ  FNKLKI K
Sbjct: 1  AASGAVQFQMLDMTYPGVVPMYKVNFDAKTEYDMIQNYKVLQMRFNKLKIAK 52