Miyakogusa Predicted Gene

Lj5g3v1601830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1601830.1 CUFF.55585.1
         (261 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g087500.1 | hypothetical protein | HC | chr1:39217313-3921...   367   e-102

>Medtr1g087500.1 | hypothetical protein | HC |
           chr1:39217313-39213341 | 20130731
          Length = 264

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/268 (73%), Positives = 208/268 (77%), Gaps = 11/268 (4%)

Query: 1   MGSDSNLGGXXXXXXXXXXXXXKRTRDPEEEVYLDNLRSHKRYLSEIMASSLNGLTVGDS 60
           MG DSNLGG             KRTRDPEEEVY+DNLRSHKRYLSEIMASSLNGLTVGDS
Sbjct: 1   MGFDSNLGGSPSSSSPSS----KRTRDPEEEVYVDNLRSHKRYLSEIMASSLNGLTVGDS 56

Query: 61  LTDNLMESPARSESSFFLRDDMSLQYSPMSEDSDDSRFCETPLQSCSPQPDSIPSSPVSP 120
           L DNLMESPARSES+F LRDDMSLQYSPMSEDSDDSRFCET L SCS  PDS P SPVSP
Sbjct: 57  LPDNLMESPARSESAFSLRDDMSLQYSPMSEDSDDSRFCETGLHSCSSHPDSRPGSPVSP 116

Query: 121 YRHQRXXXXXXXXXXXXXXXIHGCTVST---SQPRQRSSDSEGRFPSSPSDICHSADLRR 177
            R+QR                HG +VS    SQPRQRSSDS+GRFPSSPSDICHSADLRR
Sbjct: 117 CRYQRSQNTFSSAPSTSLNGSHGFSVSAVTCSQPRQRSSDSDGRFPSSPSDICHSADLRR 176

Query: 178 AALLRSVQMRTHPHGYASLELPFGSGQDPTPNIDTEERSCSYMKSLVDEGEYQIEEC--- 234
           AALLRSVQMRTHP G ASLELPFGSGQ+P PNID EER CSY+KS+VDE +YQIEEC   
Sbjct: 177 AALLRSVQMRTHPPGSASLELPFGSGQEPPPNIDPEERPCSYLKSMVDERDYQIEECSPI 236

Query: 235 -VPEPVFNHDNKSCSVLNVKEKTADSGG 261
            +PEP FNHDNK C VLN+  K ADSGG
Sbjct: 237 GIPEPEFNHDNKPCRVLNMNPKEADSGG 264