Miyakogusa Predicted Gene

Lj5g3v1600670.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1600670.1 Non Characterized Hit- tr|C5WMI2|C5WMI2_SORBI
Putative uncharacterized protein Sb01g037590
OS=Sorghu,35.27,2e-17,coiled-coil,NULL; seg,NULL; DUF4228,Protein of
unknown function DUF4228,CUFF.55571.1
         (205 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g087230.1 | multidrug resistance protein ABC transporter f...   252   2e-67
Medtr7g109410.1 | multidrug resistance protein ABC transporter f...   205   3e-53
Medtr1g108640.1 | DUF4228 domain protein | HC | chr1:49096797-49...    52   5e-07
Medtr2g105800.1 | DUF4228 domain protein | HC | chr2:45663141-45...    50   1e-06

>Medtr1g087230.1 | multidrug resistance protein ABC transporter
           family protein | HC | chr1:39083489-39084567 | 20130731
          Length = 192

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/200 (61%), Positives = 151/200 (75%), Gaps = 8/200 (4%)

Query: 1   MGNQISLRPSDATCKIVFWDGSVRKFDQPVMVAELMLEHPQQVVVEFQEGVSQRRPTPLP 60
           MGNQ+S RPSD T K+VF DGSV +FD+ + VAELM++HPQ+VVVEF   V+Q+RPTPLP
Sbjct: 1   MGNQVSFRPSDPTGKVVFLDGSVHEFDEAITVAELMMDHPQKVVVEFHSAVNQKRPTPLP 60

Query: 61  ADKKLDMNKVYLMVPMKRGKPVGLSCEESRRILLMVNSALHSKYLACSSGFMPRLPSLCQ 120
           ADKKLDMNK+YLM+P+K+GKP+GLS EE+RR+LLMVNS L+S Y+ CSS F+P   SLC 
Sbjct: 61  ADKKLDMNKIYLMLPVKQGKPIGLSGEETRRVLLMVNSILNSNYVLCSSKFLPWFSSLCH 120

Query: 121 NTSIVEAGTGVGXXXXXXXXXXXXXXDQFAEILAEMSEGRPEYLSLSRQLSGKEWKPSLD 180
           N+ IVE                      F+E L E+ EGRP+Y  L+RQ+SGK WKPSLD
Sbjct: 121 NSEIVEP------QRKEEVMEEKGERHDFSENLPEIMEGRPDY--LNRQISGKGWKPSLD 172

Query: 181 TIKEKNIEKKPSHWLFVKSF 200
           TIKEKNIEKK +HWLF+KSF
Sbjct: 173 TIKEKNIEKKHTHWLFLKSF 192


>Medtr7g109410.1 | multidrug resistance protein ABC transporter
           family protein | HC | chr7:44730509-44729481 | 20130731
          Length = 197

 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/201 (54%), Positives = 135/201 (67%), Gaps = 10/201 (4%)

Query: 1   MGNQISLRPSDATCKIVFWDGSVRKFDQPVMVAELMLEHPQQVVVEFQEGVSQRRPTPLP 60
           MGN IS     AT KI+++DGSV++FDQP+ VAELML+HP+ VVVEF   ++Q++PTPLP
Sbjct: 1   MGNHISFH---ATTKIIYYDGSVQEFDQPITVAELMLDHPKHVVVEFHSAMNQKKPTPLP 57

Query: 61  ADKKLDMNKVYLMVPMKRGKPVGLSCEESRRILLMVNSALHS-KYLACSSGFMPRLPSLC 119
           ADK L+MNK Y+MVPMK GKPVGLS E+  RIL + NSAL++  YL  S GF+P L    
Sbjct: 58  ADKNLEMNKKYVMVPMKPGKPVGLSAEDCSRILSIANSALNTNNYLMSSQGFVPWLVRFL 117

Query: 120 QNTSIVEAGTGVGXXXXXXXXXXXXXXDQFAEILAEMSEGRPEYLSLSRQLSGKEWKPSL 179
           +    VE G                    F E L EM E R EYL+LSRQLSGK WKPSL
Sbjct: 118 KKKK-VEIG-----EVETSLQINEEERFNFCEFLPEMMEERAEYLNLSRQLSGKGWKPSL 171

Query: 180 DTIKEKNIEKKPSHWLFVKSF 200
           DTIKEK +++K S WLF+ SF
Sbjct: 172 DTIKEKKVKRKISGWLFLTSF 192


>Medtr1g108640.1 | DUF4228 domain protein | HC |
           chr1:49096797-49095491 | 20130731
          Length = 173

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 9/106 (8%)

Query: 1   MGNQIS-------LRPSDATCKIVFWDGSVRKFDQPVMVAELMLEHPQQVVVEFQEGVSQ 53
           MGN +S       +R + AT +++   G V++F + +  AELMLE+P   +V  +     
Sbjct: 1   MGNYVSCTLAPPLMRNAKAT-RVILPTGEVKQFREIMKAAELMLENPNYFLVNSRSLHIS 59

Query: 54  RRPTPLPADKKLDMNKVYLMVPMKRGKPVGLSCEESRRILLMVNSA 99
            R +PL AD++L+   VY+  PM+R   V ++  +   + L  NSA
Sbjct: 60  TRFSPLAADEELEFGNVYIFFPMRRLNSV-VTGADMAVLFLAANSA 104


>Medtr2g105800.1 | DUF4228 domain protein | HC |
          chr2:45663141-45664492 | 20130731
          Length = 156

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 15 KIVFWDGSVRKFDQPVMVAELMLEHPQQVVVEFQEGVSQRRPTPLPADKKLDMNKVYLMV 74
          K++F  G + KF++ V  AELM+E P   VV  +      R   L AD++L+   VY+M+
Sbjct: 16 KVIFPSGEIHKFEEAVKAAELMVEMPSFFVVNTRSLQIGTRFCALNADEELEYGNVYVMI 75

Query: 75 PMKR 78
          PMK+
Sbjct: 76 PMKK 79