Miyakogusa Predicted Gene

Lj5g3v1598490.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1598490.2 tr|G7IDQ7|G7IDQ7_MEDTR Fat-free-like protein
OS=Medicago truncatula GN=MTR_1g087100 PE=4 SV=1,90.67,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.55559.2
         (210 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g087100.1 | transport complex protein | HC | chr1:38991336...   297   6e-81
Medtr1g087100.2 | transport complex protein | HC | chr1:38992676...   296   8e-81

>Medtr1g087100.1 | transport complex protein | HC |
           chr1:38991336-38999735 | 20130731
          Length = 773

 Score =  297 bits (760), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 151/193 (78%), Positives = 159/193 (82%), Gaps = 1/193 (0%)

Query: 19  QHKEPREVHMFVDLFLQELEVIGNEVKQILPQSARKHRRTDXXXXXXXXXXNPLREEKLG 78
           +HKEPREVHMFVD FLQELEVI NEVKQILPQ  RKHRRTD          NPLREEKLG
Sbjct: 581 KHKEPREVHMFVDFFLQELEVIHNEVKQILPQGIRKHRRTDSNGSSVSSRSNPLREEKLG 640

Query: 79  RSNTQKARSQLLETHLAKLFKQKVEIFTKVEYTQESVVTAIVKFCLKSLQEFVRLHTYNR 138
           RSNTQ+ARSQLLETHLAKLFKQKVEIFTK+EYTQESVVT IVKFCLKS+QEFVRL T+NR
Sbjct: 641 RSNTQRARSQLLETHLAKLFKQKVEIFTKIEYTQESVVTTIVKFCLKSVQEFVRLQTFNR 700

Query: 139 SGFQQIQLDIQFLRIPIREIVEDEAAIDFLLDEIIIGTAERCXXXXXXXXXXXXXXXQAK 198
           SGFQQIQLDIQFLR PIREIVEDEAA+DFLLDE+I+ TAERC               QAK
Sbjct: 701 SGFQQIQLDIQFLRTPIREIVEDEAAVDFLLDEVIVATAERCLDPIPLEPPILDKLVQAK 760

Query: 199 LAKTKEQN-TISS 210
           LAKTKEQN TISS
Sbjct: 761 LAKTKEQNTTISS 773


>Medtr1g087100.2 | transport complex protein | HC |
           chr1:38992676-38999735 | 20130731
          Length = 583

 Score =  296 bits (759), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 151/193 (78%), Positives = 159/193 (82%), Gaps = 1/193 (0%)

Query: 19  QHKEPREVHMFVDLFLQELEVIGNEVKQILPQSARKHRRTDXXXXXXXXXXNPLREEKLG 78
           +HKEPREVHMFVD FLQELEVI NEVKQILPQ  RKHRRTD          NPLREEKLG
Sbjct: 391 KHKEPREVHMFVDFFLQELEVIHNEVKQILPQGIRKHRRTDSNGSSVSSRSNPLREEKLG 450

Query: 79  RSNTQKARSQLLETHLAKLFKQKVEIFTKVEYTQESVVTAIVKFCLKSLQEFVRLHTYNR 138
           RSNTQ+ARSQLLETHLAKLFKQKVEIFTK+EYTQESVVT IVKFCLKS+QEFVRL T+NR
Sbjct: 451 RSNTQRARSQLLETHLAKLFKQKVEIFTKIEYTQESVVTTIVKFCLKSVQEFVRLQTFNR 510

Query: 139 SGFQQIQLDIQFLRIPIREIVEDEAAIDFLLDEIIIGTAERCXXXXXXXXXXXXXXXQAK 198
           SGFQQIQLDIQFLR PIREIVEDEAA+DFLLDE+I+ TAERC               QAK
Sbjct: 511 SGFQQIQLDIQFLRTPIREIVEDEAAVDFLLDEVIVATAERCLDPIPLEPPILDKLVQAK 570

Query: 199 LAKTKEQN-TISS 210
           LAKTKEQN TISS
Sbjct: 571 LAKTKEQNTTISS 583