Miyakogusa Predicted Gene

Lj5g3v1598460.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1598460.1 Non Characterized Hit- tr|A9P0H0|A9P0H0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,44.21,0.000000000000007,CP12,Domain of unknown function CP12; no
description,Domain of unknown function CP12,CUFF.55589.1
         (131 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g087030.1 | calvin cycle protein CP12-1 | HC | chr1:389593...   178   1e-45
Medtr7g109520.1 | calvin cycle protein CP12-1 | HC | chr7:448030...   142   6e-35

>Medtr1g087030.1 | calvin cycle protein CP12-1 | HC |
           chr1:38959375-38960094 | 20130731
          Length = 131

 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/132 (71%), Positives = 108/132 (81%), Gaps = 5/132 (3%)

Query: 2   ATIAGVSLSSPGVLAKGPDSLQKQKPQAIRFPQ--LLNQRCPAMVRSDRMVSFQPVRAAP 59
           AT+AGVSLSSP V+ KGP+SLQK   QAIR     +LNQR    V S RMVS +PV+A+P
Sbjct: 3   ATMAGVSLSSPRVIFKGPESLQKS--QAIRSGPVFMLNQRWTGAVSSGRMVSIRPVQASP 60

Query: 60  EGISGKVEESIKSAEETCSENATSGECAAAWDEVEELSAAASHARDKLKETDPLENYCKE 119
           + I+GKVEESIKSAEE C+ +ATSGEC AAWDEVEELSAAASHARDK K +DPLE YCK+
Sbjct: 61  D-ITGKVEESIKSAEEACAGDATSGECVAAWDEVEELSAAASHARDKKKTSDPLEEYCKD 119

Query: 120 NPETDECRTYDN 131
           NPETDECRTYDN
Sbjct: 120 NPETDECRTYDN 131


>Medtr7g109520.1 | calvin cycle protein CP12-1 | HC |
           chr7:44803012-44802210 | 20130731
          Length = 128

 Score =  142 bits (359), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 95/133 (71%), Gaps = 7/133 (5%)

Query: 1   MATIAGVS-LSSPGVLAKGPDSLQKQKPQAIRF-PQLLNQRCPAMVRSDRMVSFQPVRAA 58
           MATI G+S LS+P +L           PQ I+  P    Q    +  S RM   +PVRAA
Sbjct: 1   MATIGGLSSLSNPKLLFN-----SSGFPQTIKISPATPLQTRWGVAGSGRMTVVRPVRAA 55

Query: 59  PEGISGKVEESIKSAEETCSENATSGECAAAWDEVEELSAAASHARDKLKETDPLENYCK 118
           PE IS KVEESIKSA+ETC+++  SGEC AAWDEVEELSAAASHARD+ K++DPLE+YCK
Sbjct: 56  PEQISKKVEESIKSAQETCADDPVSGECVAAWDEVEELSAAASHARDRKKDSDPLEDYCK 115

Query: 119 ENPETDECRTYDN 131
           +NPETDEC+T+D 
Sbjct: 116 DNPETDECKTFDT 128