Miyakogusa Predicted Gene
- Lj5g3v1598460.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1598460.1 Non Characterized Hit- tr|A9P0H0|A9P0H0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,44.21,0.000000000000007,CP12,Domain of unknown function CP12; no
description,Domain of unknown function CP12,CUFF.55589.1
(131 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g087030.1 | calvin cycle protein CP12-1 | HC | chr1:389593... 178 1e-45
Medtr7g109520.1 | calvin cycle protein CP12-1 | HC | chr7:448030... 142 6e-35
>Medtr1g087030.1 | calvin cycle protein CP12-1 | HC |
chr1:38959375-38960094 | 20130731
Length = 131
Score = 178 bits (452), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/132 (71%), Positives = 108/132 (81%), Gaps = 5/132 (3%)
Query: 2 ATIAGVSLSSPGVLAKGPDSLQKQKPQAIRFPQ--LLNQRCPAMVRSDRMVSFQPVRAAP 59
AT+AGVSLSSP V+ KGP+SLQK QAIR +LNQR V S RMVS +PV+A+P
Sbjct: 3 ATMAGVSLSSPRVIFKGPESLQKS--QAIRSGPVFMLNQRWTGAVSSGRMVSIRPVQASP 60
Query: 60 EGISGKVEESIKSAEETCSENATSGECAAAWDEVEELSAAASHARDKLKETDPLENYCKE 119
+ I+GKVEESIKSAEE C+ +ATSGEC AAWDEVEELSAAASHARDK K +DPLE YCK+
Sbjct: 61 D-ITGKVEESIKSAEEACAGDATSGECVAAWDEVEELSAAASHARDKKKTSDPLEEYCKD 119
Query: 120 NPETDECRTYDN 131
NPETDECRTYDN
Sbjct: 120 NPETDECRTYDN 131
>Medtr7g109520.1 | calvin cycle protein CP12-1 | HC |
chr7:44803012-44802210 | 20130731
Length = 128
Score = 142 bits (359), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/133 (58%), Positives = 95/133 (71%), Gaps = 7/133 (5%)
Query: 1 MATIAGVS-LSSPGVLAKGPDSLQKQKPQAIRF-PQLLNQRCPAMVRSDRMVSFQPVRAA 58
MATI G+S LS+P +L PQ I+ P Q + S RM +PVRAA
Sbjct: 1 MATIGGLSSLSNPKLLFN-----SSGFPQTIKISPATPLQTRWGVAGSGRMTVVRPVRAA 55
Query: 59 PEGISGKVEESIKSAEETCSENATSGECAAAWDEVEELSAAASHARDKLKETDPLENYCK 118
PE IS KVEESIKSA+ETC+++ SGEC AAWDEVEELSAAASHARD+ K++DPLE+YCK
Sbjct: 56 PEQISKKVEESIKSAQETCADDPVSGECVAAWDEVEELSAAASHARDRKKDSDPLEDYCK 115
Query: 119 ENPETDECRTYDN 131
+NPETDEC+T+D
Sbjct: 116 DNPETDECKTFDT 128