Miyakogusa Predicted Gene

Lj5g3v1537640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1537640.1 tr|C3KGZ0|C3KGZ0_ANOFI C9orf78 OS=Anoplopoma
fimbria GN=CI078 PE=2 SV=1,31.17,7e-19,SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,Hepatocellular carcinoma-associated antigen 59;
Hep_59,He,CUFF.55514.1
         (288 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g085470.1 | hepatocellular carcinoma-associated antigen 59...   428   e-120

>Medtr1g085470.1 | hepatocellular carcinoma-associated antigen 59 |
           HC | chr1:38171684-38166665 | 20130731
          Length = 291

 Score =  428 bits (1101), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 251/293 (85%), Gaps = 8/293 (2%)

Query: 1   MEDSKQQ--RKKNYRKRSAPVEQDQLPQSQDNNNESDDERERRMALEEIKLLQKQRERKS 58
           ME+SK++  R+KNYRKR+   E DQ PQSQ  NN+SDDE ERR+ALEEIKLLQKQRERKS
Sbjct: 1   MENSKEEKPRRKNYRKRTPTEEHDQPPQSQ-QNNDSDDESERRLALEEIKLLQKQRERKS 59

Query: 59  GIAANPSLQ-SQAVVTAGSAAKPAEKNXXXXXXXXX--LVLQDTFAQETAVMDEDPNMVK 115
           GI A  +LQ SQ  +++G A+K  +KN           LVLQDTFAQETAVMDEDPNMVK
Sbjct: 60  GIPATLTLQQSQPGISSGLASKAVDKNDAGGDGGDKDDLVLQDTFAQETAVMDEDPNMVK 119

Query: 116 YVEQELAKKRGRKIDEADQIENELKRAEDELYKIPEHLKVKKRNSEESSTQWTTGIAEIQ 175
           Y+EQELAKKRGR IDE DQ+ENELKRAEDELY IP+HLKVKKRNSEESSTQWTTGIAEIQ
Sbjct: 120 YIEQELAKKRGRNIDEEDQVENELKRAEDELYTIPDHLKVKKRNSEESSTQWTTGIAEIQ 179

Query: 176 LPIEYKLKNIEETEAAKKLLQEKRLM-GRTKPEVSSIPSSYSADYFQRGRDYAEKLRREH 234
           LPIEYKLKNIEETEAAKKLLQEKRLM GR K + S IPSSYSADYFQRGRDYAEKLRREH
Sbjct: 180 LPIEYKLKNIEETEAAKKLLQEKRLMVGRAKSDFS-IPSSYSADYFQRGRDYAEKLRREH 238

Query: 235 PELYKDRSLQDDSSGSKQNDSSTDAAGAVQRQAATDEFMLERFRKRERHRVMR 287
           PELYKDRS QDD+S SKQN+SS+DA GAVQRQAATD+FMLERF+KRERHRV R
Sbjct: 239 PELYKDRSQQDDNSASKQNESSSDAPGAVQRQAATDQFMLERFKKRERHRVRR 291