Miyakogusa Predicted Gene

Lj5g3v1533480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1533480.1 tr|Q68HK1|Q68HK1_PEA Phytochrome OS=Pisum sativum
GN=PHYA PE=3 SV=1,88.97,0,Domain present in phytochromes and
cGMP-spe,GAF domain; PAS domain,PAS domain; His Kinase A
(phospho,CUFF.55479.1
         (1124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g085160.1 | phytochrome protein A | HC | chr1:38027094-380...  1912   0.0  
Medtr1g085160.3 | phytochrome protein A | HC | chr1:38026874-380...  1911   0.0  
Medtr1g085160.2 | phytochrome protein A | HC | chr1:38026874-380...  1911   0.0  
Medtr2g034040.1 | phytochrome protein B | HC | chr2:12993536-129...  1102   0.0  
Medtr2g049520.1 | phytochrome protein | HC | chr2:21814696-21818...   973   0.0  

>Medtr1g085160.1 | phytochrome protein A | HC | chr1:38027094-38021769
            | 20130731
          Length = 1171

 Score = 1912 bits (4954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 921/1103 (83%), Positives = 980/1103 (88%)

Query: 22   VIAQTTVDAKIHANFEEXXXXXXXXXXVRASGTADADHQPKSNKVTTAYLHHIQRGKLIQ 81
            +IAQTTVDAK+HA FEE          VR SG+ D +HQP+SNKVTTAYL+ IQRGK IQ
Sbjct: 69   IIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGEHQPRSNKVTTAYLNTIQRGKQIQ 128

Query: 82   PFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGEHPALGIDTDIRTIFTAPSASAL 141
            PFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVG+HPALGI TDIRTIFTAPSASAL
Sbjct: 129  PFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSASAL 188

Query: 142  QKALGFAEVTLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSY 201
            QKALGFAEV+LLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSY
Sbjct: 189  QKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSY 248

Query: 202  KLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGL 261
            KLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAE+TK GL
Sbjct: 249  KLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVTKTGL 308

Query: 262  EPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKQVKVLIDEKLPFDLTLCGSTLRAPH 321
            EPYLGLHYPATDIPQA+RFLFMKNKVRMIVDCHAK VKVL DEKLPFDLTLCGSTLRAPH
Sbjct: 309  EPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPH 368

Query: 322  SCHLQYMANMDSIASLVMAXXXXXXXXXXXXXXXXQPQKRKRLWGLVVCHNTSPRFVPFP 381
            SCHLQYMANMDSIASLVMA                 PQK+KRLWGLVVCHNT+PRFVPFP
Sbjct: 369  SCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKKKRLWGLVVCHNTTPRFVPFP 428

Query: 382  LRYACEFLAQVFAIHVNKEIELECQILEKNILRTQTLLCDMLMRDAPLGILTQSPNLMDL 441
            LRYACEFLAQVFAIHVNKEIELE QILEKNILRTQTLLCDMLMRDAPLGI++QSPN+MDL
Sbjct: 429  LRYACEFLAQVFAIHVNKEIELEFQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDL 488

Query: 442  VKCDGAALLYKNKVWMLGVTPSELHIRDIASWLSKYHXXXXXXXXXXXXXAGFPGALSLG 501
            VKCDGAALLY+NK+W+LG TPSE  IR+IA W+S+YH             AGFPGAL L 
Sbjct: 489  VKCDGAALLYRNKLWILGATPSEPQIREIALWMSEYHTDSTGLSTDSLSDAGFPGALKLN 548

Query: 502  DLVCGMAAVRITPKDVVFWFRSHTAAEIRWGGAKHEPGEQDDGKKMHPRSSFKAFLEVVR 561
            D VCGMAAVRIT KD+VFWFRSHTAAEIRWGGAKHEPGEQDDG+KMHPRSSFKAFLEVV+
Sbjct: 549  DTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVK 608

Query: 562  ARSSPWKDYEMDAIHSLQLILRNAFKDTDSMDINTTAIDTRLSDLKIEGMQELEAVTSEM 621
            ARS PWKD+EMDAIHSLQLILRNA KDTD +D+N+ AI+TRL+DLKIEGMQELEAVTSEM
Sbjct: 609  ARSIPWKDFEMDAIHSLQLILRNASKDTDMIDLNSKAINTRLNDLKIEGMQELEAVTSEM 668

Query: 622  VRLIETATVPILAVDIDGLVNGWNIKIAELTGLPVGEAIGKHLLTLVEDCSTDRVKKMLD 681
            VRLIETATVPILAVD+DG+VNGWNIKI+ELTGLPVGEAIGKHLLTLVED STD VKKML+
Sbjct: 669  VRLIETATVPILAVDVDGMVNGWNIKISELTGLPVGEAIGKHLLTLVEDSSTDIVKKMLN 728

Query: 682  LALSGEEEKNVQFEIKTHGSKMESGPISLVVNACASRDLRENVVGVCFVAQDITAQKTVM 741
            LAL G+EEKNVQFEIKTHGSK + GPISL+VNACASRDL ENVVGVCFVAQDITAQKTVM
Sbjct: 729  LALQGQEEKNVQFEIKTHGSKTDCGPISLIVNACASRDLHENVVGVCFVAQDITAQKTVM 788

Query: 742  DKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEV 801
            DKFTRIEGDYKAIVQNPN LIPPIFGTDEFGWCCEWN AM K+TGWKREEVMDKMLLGEV
Sbjct: 789  DKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAAMIKITGWKREEVMDKMLLGEV 848

Query: 802  FGTHMAACRLKNQEAFVNFGIVLNKAMTGSETEKVGFGFFARSGKYVECLLSVSKKLDVE 861
            FGTHM+ CRLKNQEAFVNFGIVLNKAMTG ETEKV FGF +R GKYVECLLSVSKK+D E
Sbjct: 849  FGTHMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVPFGFLSRKGKYVECLLSVSKKIDAE 908

Query: 862  GLVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQIRNPLSGIVFSRKTLE 921
            GLVTGVFCFLQLASPELQQALHIQ LSEQTALKRLK LTYM+RQIRNPLSGIVFS K LE
Sbjct: 909  GLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTYMRRQIRNPLSGIVFSSKMLE 968

Query: 922  GTDLGIEQKRLVHTSAQCQRQXXXXXXXXXXXXXXXGYLDLEMAEFTLQDVLITSLSQIM 981
             T+LG EQKR+V+TS+QCQRQ               GYLDLEMAEFTL +VL+TSLSQ+M
Sbjct: 969  NTELGTEQKRIVNTSSQCQRQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVM 1028

Query: 982  ARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFLLISINCTPNGGQVVVAASLTKE 1041
             RS+ R IRIVNDVAE I +E LYGDSLRLQQVLADFLLISIN TPNGGQVV+AA+LTKE
Sbjct: 1029 NRSNTRSIRIVNDVAEHIAMETLYGDSLRLQQVLADFLLISINSTPNGGQVVIAATLTKE 1088

Query: 1042 QLGKSVHLANLELSITHGGSGVPEALLNQMFGNDGLESEEGXXXXXXXXXXXXMSGDVRY 1101
            QLGKSVHL NLELSITHGG+GV EA+LNQMFGN+GLESEEG            M+GDVRY
Sbjct: 1089 QLGKSVHLVNLELSITHGGNGVAEAVLNQMFGNNGLESEEGISLHISRKLLKLMNGDVRY 1148

Query: 1102 LREAGKSSFILSVELAAAHKLKA 1124
            L+EAGKSSFILSVELAAA KL+ 
Sbjct: 1149 LKEAGKSSFILSVELAAAQKLRG 1171


>Medtr1g085160.3 | phytochrome protein A | HC | chr1:38026874-38021654
            | 20130731
          Length = 1124

 Score = 1911 bits (4951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 921/1103 (83%), Positives = 980/1103 (88%)

Query: 22   VIAQTTVDAKIHANFEEXXXXXXXXXXVRASGTADADHQPKSNKVTTAYLHHIQRGKLIQ 81
            +IAQTTVDAK+HA FEE          VR SG+ D +HQP+SNKVTTAYL+ IQRGK IQ
Sbjct: 22   IIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGEHQPRSNKVTTAYLNTIQRGKQIQ 81

Query: 82   PFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGEHPALGIDTDIRTIFTAPSASAL 141
            PFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVG+HPALGI TDIRTIFTAPSASAL
Sbjct: 82   PFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSASAL 141

Query: 142  QKALGFAEVTLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSY 201
            QKALGFAEV+LLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSY
Sbjct: 142  QKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSY 201

Query: 202  KLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGL 261
            KLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAE+TK GL
Sbjct: 202  KLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVTKTGL 261

Query: 262  EPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKQVKVLIDEKLPFDLTLCGSTLRAPH 321
            EPYLGLHYPATDIPQA+RFLFMKNKVRMIVDCHAK VKVL DEKLPFDLTLCGSTLRAPH
Sbjct: 262  EPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPH 321

Query: 322  SCHLQYMANMDSIASLVMAXXXXXXXXXXXXXXXXQPQKRKRLWGLVVCHNTSPRFVPFP 381
            SCHLQYMANMDSIASLVMA                 PQK+KRLWGLVVCHNT+PRFVPFP
Sbjct: 322  SCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKKKRLWGLVVCHNTTPRFVPFP 381

Query: 382  LRYACEFLAQVFAIHVNKEIELECQILEKNILRTQTLLCDMLMRDAPLGILTQSPNLMDL 441
            LRYACEFLAQVFAIHVNKEIELE QILEKNILRTQTLLCDMLMRDAPLGI++QSPN+MDL
Sbjct: 382  LRYACEFLAQVFAIHVNKEIELEFQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDL 441

Query: 442  VKCDGAALLYKNKVWMLGVTPSELHIRDIASWLSKYHXXXXXXXXXXXXXAGFPGALSLG 501
            VKCDGAALLY+NK+W+LG TPSE  IR+IA W+S+YH             AGFPGAL L 
Sbjct: 442  VKCDGAALLYRNKLWILGATPSEPQIREIALWMSEYHTDSTGLSTDSLSDAGFPGALKLN 501

Query: 502  DLVCGMAAVRITPKDVVFWFRSHTAAEIRWGGAKHEPGEQDDGKKMHPRSSFKAFLEVVR 561
            D VCGMAAVRIT KD+VFWFRSHTAAEIRWGGAKHEPGEQDDG+KMHPRSSFKAFLEVV+
Sbjct: 502  DTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVK 561

Query: 562  ARSSPWKDYEMDAIHSLQLILRNAFKDTDSMDINTTAIDTRLSDLKIEGMQELEAVTSEM 621
            ARS PWKD+EMDAIHSLQLILRNA KDTD +D+N+ AI+TRL+DLKIEGMQELEAVTSEM
Sbjct: 562  ARSIPWKDFEMDAIHSLQLILRNASKDTDMIDLNSKAINTRLNDLKIEGMQELEAVTSEM 621

Query: 622  VRLIETATVPILAVDIDGLVNGWNIKIAELTGLPVGEAIGKHLLTLVEDCSTDRVKKMLD 681
            VRLIETATVPILAVD+DG+VNGWNIKI+ELTGLPVGEAIGKHLLTLVED STD VKKML+
Sbjct: 622  VRLIETATVPILAVDVDGMVNGWNIKISELTGLPVGEAIGKHLLTLVEDSSTDIVKKMLN 681

Query: 682  LALSGEEEKNVQFEIKTHGSKMESGPISLVVNACASRDLRENVVGVCFVAQDITAQKTVM 741
            LAL G+EEKNVQFEIKTHGSK + GPISL+VNACASRDL ENVVGVCFVAQDITAQKTVM
Sbjct: 682  LALQGQEEKNVQFEIKTHGSKTDCGPISLIVNACASRDLHENVVGVCFVAQDITAQKTVM 741

Query: 742  DKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEV 801
            DKFTRIEGDYKAIVQNPN LIPPIFGTDEFGWCCEWN AM K+TGWKREEVMDKMLLGEV
Sbjct: 742  DKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAAMIKITGWKREEVMDKMLLGEV 801

Query: 802  FGTHMAACRLKNQEAFVNFGIVLNKAMTGSETEKVGFGFFARSGKYVECLLSVSKKLDVE 861
            FGTHM+ CRLKNQEAFVNFGIVLNKAMTG ETEKV FGF +R GKYVECLLSVSKK+D E
Sbjct: 802  FGTHMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVPFGFLSRKGKYVECLLSVSKKIDAE 861

Query: 862  GLVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQIRNPLSGIVFSRKTLE 921
            GLVTGVFCFLQLASPELQQALHIQ LSEQTALKRLK LTYM+RQIRNPLSGIVFS K LE
Sbjct: 862  GLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTYMRRQIRNPLSGIVFSSKMLE 921

Query: 922  GTDLGIEQKRLVHTSAQCQRQXXXXXXXXXXXXXXXGYLDLEMAEFTLQDVLITSLSQIM 981
             T+LG EQKR+V+TS+QCQRQ               GYLDLEMAEFTL +VL+TSLSQ+M
Sbjct: 922  NTELGTEQKRIVNTSSQCQRQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVM 981

Query: 982  ARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFLLISINCTPNGGQVVVAASLTKE 1041
             RS+ R IRIVNDVAE I +E LYGDSLRLQQVLADFLLISIN TPNGGQVV+AA+LTKE
Sbjct: 982  NRSNTRSIRIVNDVAEHIAMETLYGDSLRLQQVLADFLLISINSTPNGGQVVIAATLTKE 1041

Query: 1042 QLGKSVHLANLELSITHGGSGVPEALLNQMFGNDGLESEEGXXXXXXXXXXXXMSGDVRY 1101
            QLGKSVHL NLELSITHGG+GV EA+LNQMFGN+GLESEEG            M+GDVRY
Sbjct: 1042 QLGKSVHLVNLELSITHGGNGVAEAVLNQMFGNNGLESEEGISLHISRKLLKLMNGDVRY 1101

Query: 1102 LREAGKSSFILSVELAAAHKLKA 1124
            L+EAGKSSFILSVELAAA KL+ 
Sbjct: 1102 LKEAGKSSFILSVELAAAQKLRG 1124


>Medtr1g085160.2 | phytochrome protein A | HC | chr1:38026874-38021654
            | 20130731
          Length = 1124

 Score = 1911 bits (4951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 921/1103 (83%), Positives = 980/1103 (88%)

Query: 22   VIAQTTVDAKIHANFEEXXXXXXXXXXVRASGTADADHQPKSNKVTTAYLHHIQRGKLIQ 81
            +IAQTTVDAK+HA FEE          VR SG+ D +HQP+SNKVTTAYL+ IQRGK IQ
Sbjct: 22   IIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGEHQPRSNKVTTAYLNTIQRGKQIQ 81

Query: 82   PFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGEHPALGIDTDIRTIFTAPSASAL 141
            PFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVG+HPALGI TDIRTIFTAPSASAL
Sbjct: 82   PFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSASAL 141

Query: 142  QKALGFAEVTLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSY 201
            QKALGFAEV+LLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSY
Sbjct: 142  QKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSY 201

Query: 202  KLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGL 261
            KLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAE+TK GL
Sbjct: 202  KLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVTKTGL 261

Query: 262  EPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKQVKVLIDEKLPFDLTLCGSTLRAPH 321
            EPYLGLHYPATDIPQA+RFLFMKNKVRMIVDCHAK VKVL DEKLPFDLTLCGSTLRAPH
Sbjct: 262  EPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPH 321

Query: 322  SCHLQYMANMDSIASLVMAXXXXXXXXXXXXXXXXQPQKRKRLWGLVVCHNTSPRFVPFP 381
            SCHLQYMANMDSIASLVMA                 PQK+KRLWGLVVCHNT+PRFVPFP
Sbjct: 322  SCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKKKRLWGLVVCHNTTPRFVPFP 381

Query: 382  LRYACEFLAQVFAIHVNKEIELECQILEKNILRTQTLLCDMLMRDAPLGILTQSPNLMDL 441
            LRYACEFLAQVFAIHVNKEIELE QILEKNILRTQTLLCDMLMRDAPLGI++QSPN+MDL
Sbjct: 382  LRYACEFLAQVFAIHVNKEIELEFQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDL 441

Query: 442  VKCDGAALLYKNKVWMLGVTPSELHIRDIASWLSKYHXXXXXXXXXXXXXAGFPGALSLG 501
            VKCDGAALLY+NK+W+LG TPSE  IR+IA W+S+YH             AGFPGAL L 
Sbjct: 442  VKCDGAALLYRNKLWILGATPSEPQIREIALWMSEYHTDSTGLSTDSLSDAGFPGALKLN 501

Query: 502  DLVCGMAAVRITPKDVVFWFRSHTAAEIRWGGAKHEPGEQDDGKKMHPRSSFKAFLEVVR 561
            D VCGMAAVRIT KD+VFWFRSHTAAEIRWGGAKHEPGEQDDG+KMHPRSSFKAFLEVV+
Sbjct: 502  DTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVK 561

Query: 562  ARSSPWKDYEMDAIHSLQLILRNAFKDTDSMDINTTAIDTRLSDLKIEGMQELEAVTSEM 621
            ARS PWKD+EMDAIHSLQLILRNA KDTD +D+N+ AI+TRL+DLKIEGMQELEAVTSEM
Sbjct: 562  ARSIPWKDFEMDAIHSLQLILRNASKDTDMIDLNSKAINTRLNDLKIEGMQELEAVTSEM 621

Query: 622  VRLIETATVPILAVDIDGLVNGWNIKIAELTGLPVGEAIGKHLLTLVEDCSTDRVKKMLD 681
            VRLIETATVPILAVD+DG+VNGWNIKI+ELTGLPVGEAIGKHLLTLVED STD VKKML+
Sbjct: 622  VRLIETATVPILAVDVDGMVNGWNIKISELTGLPVGEAIGKHLLTLVEDSSTDIVKKMLN 681

Query: 682  LALSGEEEKNVQFEIKTHGSKMESGPISLVVNACASRDLRENVVGVCFVAQDITAQKTVM 741
            LAL G+EEKNVQFEIKTHGSK + GPISL+VNACASRDL ENVVGVCFVAQDITAQKTVM
Sbjct: 682  LALQGQEEKNVQFEIKTHGSKTDCGPISLIVNACASRDLHENVVGVCFVAQDITAQKTVM 741

Query: 742  DKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEV 801
            DKFTRIEGDYKAIVQNPN LIPPIFGTDEFGWCCEWN AM K+TGWKREEVMDKMLLGEV
Sbjct: 742  DKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAAMIKITGWKREEVMDKMLLGEV 801

Query: 802  FGTHMAACRLKNQEAFVNFGIVLNKAMTGSETEKVGFGFFARSGKYVECLLSVSKKLDVE 861
            FGTHM+ CRLKNQEAFVNFGIVLNKAMTG ETEKV FGF +R GKYVECLLSVSKK+D E
Sbjct: 802  FGTHMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVPFGFLSRKGKYVECLLSVSKKIDAE 861

Query: 862  GLVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQIRNPLSGIVFSRKTLE 921
            GLVTGVFCFLQLASPELQQALHIQ LSEQTALKRLK LTYM+RQIRNPLSGIVFS K LE
Sbjct: 862  GLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTYMRRQIRNPLSGIVFSSKMLE 921

Query: 922  GTDLGIEQKRLVHTSAQCQRQXXXXXXXXXXXXXXXGYLDLEMAEFTLQDVLITSLSQIM 981
             T+LG EQKR+V+TS+QCQRQ               GYLDLEMAEFTL +VL+TSLSQ+M
Sbjct: 922  NTELGTEQKRIVNTSSQCQRQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVM 981

Query: 982  ARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFLLISINCTPNGGQVVVAASLTKE 1041
             RS+ R IRIVNDVAE I +E LYGDSLRLQQVLADFLLISIN TPNGGQVV+AA+LTKE
Sbjct: 982  NRSNTRSIRIVNDVAEHIAMETLYGDSLRLQQVLADFLLISINSTPNGGQVVIAATLTKE 1041

Query: 1042 QLGKSVHLANLELSITHGGSGVPEALLNQMFGNDGLESEEGXXXXXXXXXXXXMSGDVRY 1101
            QLGKSVHL NLELSITHGG+GV EA+LNQMFGN+GLESEEG            M+GDVRY
Sbjct: 1042 QLGKSVHLVNLELSITHGGNGVAEAVLNQMFGNNGLESEEGISLHISRKLLKLMNGDVRY 1101

Query: 1102 LREAGKSSFILSVELAAAHKLKA 1124
            L+EAGKSSFILSVELAAA KL+ 
Sbjct: 1102 LKEAGKSSFILSVELAAAQKLRG 1124


>Medtr2g034040.1 | phytochrome protein B | HC | chr2:12993536-12986584
            | 20130731
          Length = 1198

 Score = 1102 bits (2851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1106 (49%), Positives = 738/1106 (66%), Gaps = 14/1106 (1%)

Query: 23   IAQTTVDAKIHANFEEXXXXXXXXXXVRASGTADADHQPKSNKVTTAYLHHIQRGKLIQP 82
            IAQ T DA++HA FE+          +R +  A +   P+     TAYL  IQRG  IQP
Sbjct: 48   IAQYTEDARLHAVFEQSGDSFDYSQSIRLTTAAHSQSVPEQQ--ITAYLAKIQRGGFIQP 105

Query: 83   FGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSV-----GEHPALGIDTDIRTIFTAPS 137
            FG ++A+DE + +V+AYSENA +ML +   +VPS+            I TD+R++FT  S
Sbjct: 106  FGSMIAVDEPSFRVLAYSENARDMLGITPQSVPSLEDDDESSSSGFNIGTDVRSLFTHSS 165

Query: 138  ASALQKALGFAEVTLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGA 197
               L+KA    E++L+NPI +H +++GKPFY I+HR+   ++ID EP +  +  ++ AGA
Sbjct: 166  GVLLEKAFAAREISLMNPIWIHSRSTGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGA 225

Query: 198  LQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEIT 257
            +QS KLA +AI++LQSLP G ++ LCD +V+ V ELTGYDRVM YKFHED+HGEV+AE  
Sbjct: 226  VQSQKLAVRAISQLQSLPGGDVKVLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESK 285

Query: 258  KPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKQVKVLIDEKLPFDLTLCGSTL 317
            +  LEPY+GLHYPATDIPQASRFLF +N+VRMIVDC+A  V+V  DE L   + L GSTL
Sbjct: 286  RIDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVCLVGSTL 345

Query: 318  RAPHSCHLQYMANMDSIASLVMAXXXXXXXXXXXXXXXXQPQKRKRLWGLVVCHNTSPRF 377
            RAPH CH QYMANM SIASL MA                  +   RLWGLVVCH+TS R 
Sbjct: 346  RAPHGCHAQYMANMGSIASLAMAVIINGNDEDGVGIGGTG-RNSMRLWGLVVCHHTSARC 404

Query: 378  VPFPLRYACEFLAQVFAIHVNKEIELECQILEKNILRTQTLLCDMLMRDAPLGILTQSPN 437
            +PFPLRYACEFL Q F + +N E++L  Q LEK +LRTQTLLCDML+RD+P GI+TQSP+
Sbjct: 405  IPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPS 464

Query: 438  LMDLVKCDGAALLYKNKVWMLGVTPSELHIRDIASWLSKYHXXXXXXXXXXXXXAGFPGA 497
            +MDLVKC+GAAL Y+   + LGVTP+E  IRDI  WL  +H             AG+PGA
Sbjct: 465  IMDLVKCNGAALFYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGA 524

Query: 498  LSLGDLVCGMAAVRITPKDVVFWFRSHTAAEIRWGGAKHEPGEQDDGKKMHPRSSFKAFL 557
             SLGD VCGMA   IT KD +FWFRSHTA EI+WGGAKH P ++DDG++MHPRSSFKAFL
Sbjct: 525  ASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFL 584

Query: 558  EVVRARSSPWKDYEMDAIHSLQLILRNAFKDTDSMDINTTAIDTRLSDLKIEGMQELEAV 617
            EVV++RS  W + EMDAIHSLQLILR++FK+ ++ D +   + T +++L+++G+ EL +V
Sbjct: 585  EVVKSRSMQWDNAEMDAIHSLQLILRDSFKEAENND-SKAVVHTHMAELELQGVDELSSV 643

Query: 618  TSEMVRLIETATVPILAVDIDGLVNGWNIKIAELTGLPVGEAIGKHLL-TLVEDCSTDRV 676
              EMVRLIETAT PI AVD++G +NGWN K++ELTGL V +A+GK LL  LV   S + V
Sbjct: 644  AREMVRLIETATAPIFAVDVNGRINGWNAKVSELTGLLVEDAMGKSLLHDLVYKESQETV 703

Query: 677  KKMLDLALSGEEEKNVQFEIKTHGSKMESGPISLVVNACASRDLRENVVGVCFVAQDITA 736
             K+L  AL GEE+KNV+ +++T G   ++  + +VVNAC+S+D   N+VGVCFV QD+T 
Sbjct: 704  DKLLSHALKGEEDKNVEIKMRTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVGQDVTG 763

Query: 737  QKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKM 796
            QK VMDKF  I+GDYKAIV +PN LIPPIF +D+   C EWN AM KL+GW R +V+ K+
Sbjct: 764  QKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRTDVIGKL 823

Query: 797  LLGEVFGTHMAACRLKNQEAFVNFGIVLNKAMTGSETEKVGFGFFARSGKYVECLLSVSK 856
            L+GEVFG+    C+LK  +A   F IVL+ A+ G +T+K  F F  R GK+V+  L+ +K
Sbjct: 824  LVGEVFGSF---CQLKGSDAMTKFMIVLHNALGGQDTDKFPFSFVDRHGKFVQTFLTANK 880

Query: 857  KLDVEGLVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQIRNPLSGIVFS 916
            +++++G + G FCFLQ+ SPELQQAL +Q   + +   R+K L Y+ ++++NPLSGI F+
Sbjct: 881  RVNMDGQIIGAFCFLQIVSPELQQALTVQRQQDSSCFARMKELAYICQEVKNPLSGIRFT 940

Query: 917  RKTLEGTDLGIEQKRLVHTSAQCQRQXXXXXXXXXXXXXXXGYLDLEMAEFTLQDVLITS 976
               LE T L  EQK+L+ TS  C++Q               G L+LE  EF L++V+   
Sbjct: 941  NSLLESTCLTDEQKQLLETSVACEKQMLKIIRDIDLDIIDNGSLELEKREFLLENVINAV 1000

Query: 977  LSQIMARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFLLISINCTPN-GGQVVVA 1035
            +SQ+M     R ++++ D+ EEI    +YGD LR+QQVLADFL+  +   P+  G V + 
Sbjct: 1001 VSQVMLLLRERNLQLIRDIPEEIKALAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIH 1060

Query: 1036 ASLTKEQLGKSVHLANLELSITHGGSGVPEALLNQMFGNDGLESEEGXXXXXXXXXXXXM 1095
                 +Q+   + L + E  +   G G+P  L+  MF N    ++EG            M
Sbjct: 1061 VFPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFHNSKWVTQEGLGLSMSRKIIKLM 1120

Query: 1096 SGDVRYLREAGKSSFILSVELAAAHK 1121
            +G+V+Y+REA +  F++ +EL    +
Sbjct: 1121 NGEVQYVREAERCYFLVVLELPVTRR 1146


>Medtr2g049520.1 | phytochrome protein | HC | chr2:21814696-21818763 |
            20130731
          Length = 1122

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1099 (45%), Positives = 694/1099 (63%), Gaps = 33/1099 (3%)

Query: 23   IAQTTVDAKIHANFEEXXXXXXXXXXVRASGTADADHQPKSNKVTTAYLHHIQRGKLIQP 82
            +AQ  VDA++ A FE+           +     D        K+ T YL  IQRG  IQP
Sbjct: 32   LAQYGVDAELLAEFEQSRVYGKSFEYSKT--ILDPPRLVSEEKMIT-YLSRIQRGGFIQP 88

Query: 83   FGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGEHPALGIDTDIRTIFTAPSASALQ 142
            FGCL+ ++E T ++I YSEN  ++L  +        EH    I  D  T+FT PS S+L 
Sbjct: 89   FGCLVVIEESTFRIIGYSENCFQLLGDIG------SEHFMGLIGVDATTLFTPPSGSSLV 142

Query: 143  KALGFAEVTLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYK 202
            KA+   E++ LNPI V  +T+ KPFYAI+HR+   ++ID EP +     ++ +G+ QS K
Sbjct: 143  KAVASREISRLNPIWVRARTTEKPFYAILHRIDVGVLIDLEPARSSGPALSLSGSFQSQK 202

Query: 203  LAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 262
            +A  AI+RLQS     +  LCDT+V+EV +LTGY+RVM YKFHEDDHGEV++E  +  LE
Sbjct: 203  MAVSAISRLQSCRREDISLLCDTVVEEVQKLTGYERVMIYKFHEDDHGEVVSETRRSDLE 262

Query: 263  PYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKQVKVLIDEKLPFDLTLCGSTLRAPHS 322
             YLGLHYP+ DIPQA+RFLF +N+VR+I DCHAK VKV+   +L   L L  STLR+PH 
Sbjct: 263  SYLGLHYPSIDIPQAARFLFKQNRVRLIYDCHAKPVKVIQSRELKKPLCLVNSTLRSPHD 322

Query: 323  CHLQYMANMDSIASLVMAXXXXXXXXXXXXXXXXQPQKRKRLWGLVVCHNTSPRFVPFPL 382
            CH QYMANM SIASLVMA                  +   RLWGL+VCH+TSP  V FP+
Sbjct: 323  CHKQYMANMGSIASLVMAVVI-------------NEKDTTRLWGLLVCHHTSPHHVSFPV 369

Query: 383  RYACEFLAQVFAIHVNKEIELECQILEKNILRTQTLLCDMLMRDAPLGILTQSPNLMDLV 442
            R+ACEF+   F + +  EI+L  Q+ EK IL+TQT+LCDML+RDAP GI+TQSP++MDLV
Sbjct: 370  RHACEFVMHTFGMQLYMEIQLASQMEEKRILKTQTMLCDMLLRDAPFGIVTQSPSIMDLV 429

Query: 443  KCDGAALLYKNKVWMLGVTPSELHIRDIASWLSKYHXXXXXXXXXXXXXAGFPGALSLGD 502
            KCDGAAL Y    W+LG+TP++L ++DIA WL   +             AG+PGA  LGD
Sbjct: 430  KCDGAALYYDENCWLLGITPTKLQVKDIAEWLLSNYSDSTGLTTESLVDAGYPGATLLGD 489

Query: 503  LVCGMAAVRITPKDVVFWFRSHTAAEIRWGGAKHEPGEQDDGKKMHPRSSFKAFLEVVRA 562
             VCGMA+ RI  + ++FWFRSHTA EI+WGGAKH P ++DDG KM+PR+SFKAFLEV+++
Sbjct: 490  AVCGMASARINQRHILFWFRSHTAKEIQWGGAKHHPTDKDDGGKMNPRTSFKAFLEVLKS 549

Query: 563  RSSPWKDYEMDAIHSLQLILRNAFKDTDSMDINTTAIDTRLSDLKIEGMQELEAVTSEMV 622
            +S PW+  E++AIHSLQLI+++ F+DTD+     T  D   SD  I G  E+ ++  EMV
Sbjct: 550  KSLPWEISEINAIHSLQLIMQDLFQDTDNT-CPKTLKDFEKSDALIGGSHEISSIALEMV 608

Query: 623  RLIETATVPILAVDIDGLVNGWNIKIAELTGLPVGEAIGKHLLT-LVEDCSTDRVKKMLD 681
            RLIETA VPI  VD DGL+NGWN+KIAELTGLP  EA+GK L   +V   S + +  +L 
Sbjct: 609  RLIETAAVPIFGVDSDGLINGWNVKIAELTGLPTSEAMGKSLENEVVHVDSRETLTNILR 668

Query: 682  LALSGEEEKNVQFEIKTHGSKMESGPISLVVNACASRDLRENVVGVCFVAQDITAQKTVM 741
             AL G++ KNV+ +I       E   + L++++C SRD    +VGV FV QDIT +K ++
Sbjct: 669  RALQGQDNKNVELKINRFVLHQEKEVVYLMISSCISRDYTNAIVGVGFVGQDITFEKVIV 728

Query: 742  DKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEV 801
             KF ++EGDYKAI+ + NPLIPPIF +DE   C EWN AM ++TGWK++EV+ KMLLGE+
Sbjct: 729  KKFIKLEGDYKAIMHSLNPLIPPIFASDENACCSEWNVAMERVTGWKKDEVIGKMLLGEI 788

Query: 802  FGTHMAACRLKNQEAFVNFGIVLNKAMTGSETEKVGFGFFARSGKYVECLLSVSKKLDVE 861
            FG+    CRLK Q+A  +F I+L   ++G ++EK  FGF+ R+GK++E  ++ +K+ D  
Sbjct: 789  FGSF---CRLKGQDALTDFMILLYHGISGQDSEKSPFGFYDRNGKFIETYITTNKRTDAS 845

Query: 862  GLVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKALTYMKRQIRNPLSGIVFSRKTLE 921
              + G FCFL + + +L Q         +  + + K L Y+ ++++NPL+GI F+ K LE
Sbjct: 846  EDIIGCFCFLHVVTEDLNQPFQGHRSKCRQRISKSKELAYILQEMKNPLNGIRFTHKLLE 905

Query: 922  GTDLGIEQKRLVHTSAQCQRQXXXXXXXXXXXXXXXGYLDLEMAEFTLQDVLITSLSQIM 981
             T +   QK+L+ TS  C+RQ               G   L M EF L ++L   +SQ+M
Sbjct: 906  NTGISENQKQLLDTSEACERQIMAIIEDIDLGSINEGTWKLNMKEFLLGNILDAVVSQVM 965

Query: 982  ARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFL--LISINCTPNGG-QVVVAASL 1038
                 + +++ ++++++I    LYGD +RLQ VL+D L  ++S   +PNG  ++ +   L
Sbjct: 966  MLIKGKDLQMFHEISDKIQTLSLYGDQIRLQMVLSDILHNIVSHTPSPNGWIEMKITPGL 1025

Query: 1039 TKEQLGKSVHLANLELSITHGGSGVPEALLNQMF-GNDGLESEEGXXXXXXXXXXXXMSG 1097
               Q G      +L+  +TH G G+P ++L+ MF G +   ++EG            M+G
Sbjct: 1026 KIIQDGN--EFIHLKFRMTHSGQGLPSSILHDMFYGENQWTTQEGLGLFMSRKILSRMNG 1083

Query: 1098 DVRYLREAGKSSFILSVEL 1116
            DV Y+RE  K  F++ +EL
Sbjct: 1084 DVHYVREQNKCYFLIDLEL 1102