Miyakogusa Predicted Gene

Lj5g3v1533400.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1533400.3 tr|I3SAA1|I3SAA1_LOTJA Flap endonuclease 1
OS=Lotus japonicus GN=FEN1 PE=2 SV=1,99.66,0,XPGRADSUPER,DNA repair
protein (XPGC)/yeast Rad; no description,NULL; coiled-coil,NULL;
XPG_2,XPG co,CUFF.55447.3
         (290 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g085130.1 | flap endonuclease 1-A | HC | chr1:38000945-380...   486   e-137
Medtr1g085130.2 | flap endonuclease 1-A | HC | chr1:38001007-380...   485   e-137
Medtr1g085130.3 | flap endonuclease 1-A | HC | chr1:38000945-380...   477   e-135
Medtr1g085130.4 | flap endonuclease 1-A | HC | chr1:38000945-380...   474   e-134
Medtr7g034405.1 | DNA repair UVH3-like protein | HC | chr7:12893...    72   5e-13
Medtr7g076290.1 | flap endonuclease GEN-like protein | HC | chr7...    70   3e-12
Medtr8g087940.2 | 5'-3' exonuclease family protein | HC | chr8:3...    69   7e-12
Medtr8g087940.1 | 5'-3' exonuclease family protein | HC | chr8:3...    68   8e-12
Medtr0110s0050.1 | 5'-3' exonuclease family protein | HC | scaff...    66   4e-11
Medtr6g055360.1 | flap endonuclease GEN-like protein | HC | chr6...    53   3e-07

>Medtr1g085130.1 | flap endonuclease 1-A | HC |
           chr1:38000945-38008617 | 20130731
          Length = 384

 Score =  486 bits (1250), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/275 (85%), Positives = 248/275 (90%)

Query: 1   MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
           MK QEL KRLSKRAEAT  L+EAL+ADNKEDIEKFSKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 93  MKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVP 152

Query: 61  VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
           VVEAPSEAEAQCAALCKAG VYAVASEDMDSLTFGAPKFLRHLMDPSSKK+PVMEF+VAK
Sbjct: 153 VVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAK 212

Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
           ILEEL+LTMDQFIDLCILSGCDYCDNIRGIGG TALKLIRQHGSIE ILENI+KERYQ+P
Sbjct: 213 ILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVP 272

Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
           +DWPYQEARRLFKEP V+T D+ LNLKWS PDEEGLITFLVNENGFNSDRVT        
Sbjct: 273 DDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKA 332

Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRKETPDNNAK 275
               SSQGRLESFFKP  + SVPIKRKETP N+AK
Sbjct: 333 AKNKSSQGRLESFFKPTANPSVPIKRKETPVNDAK 367


>Medtr1g085130.2 | flap endonuclease 1-A | HC |
           chr1:38001007-38008524 | 20130731
          Length = 369

 Score =  485 bits (1248), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/275 (85%), Positives = 248/275 (90%)

Query: 1   MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
           MK QEL KRLSKRAEAT  L+EAL+ADNKEDIEKFSKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 78  MKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVP 137

Query: 61  VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
           VVEAPSEAEAQCAALCKAG VYAVASEDMDSLTFGAPKFLRHLMDPSSKK+PVMEF+VAK
Sbjct: 138 VVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAK 197

Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
           ILEEL+LTMDQFIDLCILSGCDYCDNIRGIGG TALKLIRQHGSIE ILENI+KERYQ+P
Sbjct: 198 ILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVP 257

Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
           +DWPYQEARRLFKEP V+T D+ LNLKWS PDEEGLITFLVNENGFNSDRVT        
Sbjct: 258 DDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKA 317

Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRKETPDNNAK 275
               SSQGRLESFFKP  + SVPIKRKETP N+AK
Sbjct: 318 AKNKSSQGRLESFFKPTANPSVPIKRKETPVNDAK 352


>Medtr1g085130.3 | flap endonuclease 1-A | HC |
           chr1:38000945-38008609 | 20130731
          Length = 416

 Score =  477 bits (1227), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/269 (85%), Positives = 243/269 (90%)

Query: 1   MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
           MK QEL KRLSKRAEAT  L+EAL+ADNKEDIEKFSKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 93  MKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVP 152

Query: 61  VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
           VVEAPSEAEAQCAALCKAG VYAVASEDMDSLTFGAPKFLRHLMDPSSKK+PVMEF+VAK
Sbjct: 153 VVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAK 212

Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
           ILEEL+LTMDQFIDLCILSGCDYCDNIRGIGG TALKLIRQHGSIE ILENI+KERYQ+P
Sbjct: 213 ILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVP 272

Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
           +DWPYQEARRLFKEP V+T D+ LNLKWS PDEEGLITFLVNENGFNSDRVT        
Sbjct: 273 DDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKA 332

Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRKET 269
               SSQGRLESFFKP  + SVPIKRKE+
Sbjct: 333 AKNKSSQGRLESFFKPTANPSVPIKRKES 361


>Medtr1g085130.4 | flap endonuclease 1-A | HC |
           chr1:38000945-38008113 | 20130731
          Length = 383

 Score =  474 bits (1219), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/267 (85%), Positives = 241/267 (90%)

Query: 1   MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
           MK QEL KRLSKRAEAT  L+EAL+ADNKEDIEKFSKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 93  MKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVP 152

Query: 61  VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
           VVEAPSEAEAQCAALCKAG VYAVASEDMDSLTFGAPKFLRHLMDPSSKK+PVMEF+VAK
Sbjct: 153 VVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAK 212

Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
           ILEEL+LTMDQFIDLCILSGCDYCDNIRGIGG TALKLIRQHGSIE ILENI+KERYQ+P
Sbjct: 213 ILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVP 272

Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
           +DWPYQEARRLFKEP V+T D+ LNLKWS PDEEGLITFLVNENGFNSDRVT        
Sbjct: 273 DDWPYQEARRLFKEPEVSTDDEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKA 332

Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRK 267
               SSQGRLESFFKP  + SVPIKRK
Sbjct: 333 AKNKSSQGRLESFFKPTANPSVPIKRK 359


>Medtr7g034405.1 | DNA repair UVH3-like protein | HC |
            chr7:12893024-12880077 | 20130731
          Length = 1673

 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 65/111 (58%), Gaps = 3/111 (2%)

Query: 49   DCKKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSS 108
            +C++LL++ G+P + AP EAEAQCA L  + +V  V ++D D   FGA    +++ D   
Sbjct: 1031 ECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVFLFGARSVYKNIFD--- 1087

Query: 109  KKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLI 159
             +  V  + +  + +EL L  ++ I + +L G DY + + GIG   A++++
Sbjct: 1088 DRKYVETYFMEDVEKELGLNREKLIRMALLLGSDYTEGVSGIGIVNAIEVL 1138


>Medtr7g076290.1 | flap endonuclease GEN-like protein | HC |
           chr7:28709723-28704777 | 20130731
          Length = 612

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 6/139 (4%)

Query: 48  EDCKKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPS 107
           ++C +L +L+G+PV++A  EAEA CA L   G V A  + D D+  FGA   ++    P+
Sbjct: 121 QECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCIIKSF-SPN 179

Query: 108 SKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDNIRGIGGQTALKLIRQHG--S 164
           SK+ P   + ++ I   L L     I + +L G D+    ++GIG  +AL+ ++  G   
Sbjct: 180 SKE-PFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQAFGEDD 238

Query: 165 IENILENINK-ERYQIPED 182
           I N L  I K   +Q+P D
Sbjct: 239 ILNRLHEIGKGNAFQVPID 257


>Medtr8g087940.2 | 5'-3' exonuclease family protein | HC |
           chr8:36390120-36384591 | 20130731
          Length = 721

 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 14/203 (6%)

Query: 1   MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
           MK  +  KR   R E  E   E     N     +  ++ V ++ Q   +  ++L+   V 
Sbjct: 84  MKGDQENKRARSRKENLERAVEHEANGNSTAAYECYQKAVDISPQIARELIQVLKQENVQ 143

Query: 61  VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
            V AP EA+AQ   L  +  V AV +ED D + FG P+ +   MD   + V   +F+ + 
Sbjct: 144 YVVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGCPRII-FKMDKFGQGV---QFQYSM 199

Query: 121 ILEELNLTMDQF-----IDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKE 175
           + +   L  + F     +++CILSGCDY  ++ G+G + A   I++  S + +L+++   
Sbjct: 200 LQKNKELNFEGFNKQMLLEMCILSGCDYLQSLPGMGLKKAHASIKRFKSYDKVLKHLKYN 259

Query: 176 RYQIPEDWPYQEARRLFKEPMVT 198
              +P   P+ E    F++ ++T
Sbjct: 260 GVSVP---PFYEES--FRKAILT 277


>Medtr8g087940.1 | 5'-3' exonuclease family protein | HC |
           chr8:36390120-36384780 | 20130731
          Length = 735

 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 14/203 (6%)

Query: 1   MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
           MK  +  KR   R E  E   E     N     +  ++ V ++ Q   +  ++L+   V 
Sbjct: 84  MKGDQENKRARSRKENLERAVEHEANGNSTAAYECYQKAVDISPQIARELIQVLKQENVQ 143

Query: 61  VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
            V AP EA+AQ   L  +  V AV +ED D + FG P+ +   MD   + V   +F+ + 
Sbjct: 144 YVVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGCPRII-FKMDKFGQGV---QFQYSM 199

Query: 121 ILEELNLTMDQF-----IDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKE 175
           + +   L  + F     +++CILSGCDY  ++ G+G + A   I++  S + +L+++   
Sbjct: 200 LQKNKELNFEGFNKQMLLEMCILSGCDYLQSLPGMGLKKAHASIKRFKSYDKVLKHLKYN 259

Query: 176 RYQIPEDWPYQEARRLFKEPMVT 198
              +P   P+ E    F++ ++T
Sbjct: 260 GVSVP---PFYEES--FRKAILT 277


>Medtr0110s0050.1 | 5'-3' exonuclease family protein | HC |
           scaffold0110:37420-32210 | 20130731
          Length = 574

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 19/205 (9%)

Query: 8   KRLSKRAEATEDLSEA-LKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPS 66
           K  +K+     +L+ A LK  N     +  +R V +T        + L+   +  V AP 
Sbjct: 93  KERNKKRNTNRELAMAKLKEGNVNAASELFQRAVNITPVMAHKLIQTLKSENIEFVVAPY 152

Query: 67  EAEAQCAAL----CKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKIL 122
           EA+AQ A L     + G + AV +ED D LT+G P  +  +    + +      E+ K+ 
Sbjct: 153 EADAQLAYLSNLETEKGGIAAVITEDSDLLTYGCPAVIFKMDREGNGE----RIELEKVF 208

Query: 123 EE-------LNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKE 175
                     +  M  F  +C+L+GCD+  ++ GIG   A  L+ ++ +I+ IL  +  E
Sbjct: 209 SAESCKPSFQSFNMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYRNIDRILSVLKLE 268

Query: 176 RY-QIPEDWP--YQEARRLFKEPMV 197
           +  Q+PED+   +++A  +F+   +
Sbjct: 269 KGDQMPEDYAKSFKDALAVFEHARI 293


>Medtr6g055360.1 | flap endonuclease GEN-like protein | HC |
           chr6:19794054-19802253 | 20130731
          Length = 571

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 57  MGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEF 116
           +GV  +    EAEAQCA L    +     S D D   FGA    R +       V    +
Sbjct: 132 LGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVC--Y 189

Query: 117 EVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHG 163
           E+A I  +L    D  I L +L G DY   + G+G  +A ++++  G
Sbjct: 190 EMADIERKLGFGRDSLICLSLLLGSDYYPGVHGLGPDSACQIVKSIG 236