Miyakogusa Predicted Gene
- Lj5g3v1533380.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1533380.1 tr|Q9W087|Q9W087_DROME CG2021 OS=Drosophila
melanogaster GN=CG2021 PE=2 SV=1,63.89,2e-19,no description,NULL;
LSM1,NULL; LSM,Ribonucleoprotein LSM domain; snRNP Sm
proteins,Ribonucleoprotei,CUFF.55445.1
(79 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g084910.1 | u6 snRNA-associated-like-Smprotein | HC | chr4... 140 2e-34
Medtr8g021250.2 | small nuclear ribonucleoprotein | HC | chr8:76... 62 9e-11
Medtr1g085050.1 | like-Sm protein | HC | chr1:37967704-37968391 ... 62 1e-10
Medtr8g021250.1 | small nuclear ribonucleoprotein | HC | chr8:76... 62 1e-10
Medtr2g042700.2 | small nuclear ribonucleoprotein | HC | chr2:18... 61 3e-10
Medtr2g042700.1 | small nuclear ribonucleoprotein | HC | chr2:18... 60 3e-10
Medtr7g104930.1 | small nuclear ribonucleoprotein | HC | chr7:42... 46 6e-06
Medtr7g065100.1 | u6 snRNA-associated-like-Smprotein | HC | chr7... 46 7e-06
>Medtr4g084910.1 | u6 snRNA-associated-like-Smprotein | HC |
chr4:33145686-33149143 | 20130731
Length = 99
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/80 (90%), Positives = 76/80 (95%), Gaps = 1/80 (1%)
Query: 1 MSTG-PGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIAL 59
M+TG PGLESLVDQQISVITNDGRNIVG LKGFDQATNIILDESHERVFST+EGVQ + L
Sbjct: 1 MATGGPGLESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTREGVQQLVL 60
Query: 60 GLYIIRGDNISVVGELDEDL 79
GLYIIRGDNISVVGELDE+L
Sbjct: 61 GLYIIRGDNISVVGELDEEL 80
>Medtr8g021250.2 | small nuclear ribonucleoprotein | HC |
chr8:7638060-7641793 | 20130731
Length = 129
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 6 GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 65
L S +D+++ ++ DGR ++GTL+ FDQ N +L+ + ERV I LGLY+IR
Sbjct: 14 SLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCD-IPLGLYVIR 72
Query: 66 GDNISVVGELD 76
G+N+ ++GE+D
Sbjct: 73 GENVVLIGEMD 83
>Medtr1g085050.1 | like-Sm protein | HC | chr1:37967704-37968391 |
20130731
Length = 91
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 11/60 (18%)
Query: 20 NDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRGDNISVVGELDEDL 79
NDGRNIVG LKGFDQATNIIL ESHER +G+ I ++VVG+LDEDL
Sbjct: 24 NDGRNIVGVLKGFDQATNIILVESHERTRLFYQGMNSI-----------LTVVGKLDEDL 72
>Medtr8g021250.1 | small nuclear ribonucleoprotein | HC |
chr8:7638054-7641793 | 20130731
Length = 128
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 6 GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 65
L S +D+++ ++ DGR ++GTL+ FDQ N +L+ + ERV I LGLY+IR
Sbjct: 14 SLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCD-IPLGLYVIR 72
Query: 66 GDNISVVGELD 76
G+N+ ++GE+D
Sbjct: 73 GENVVLIGEMD 83
>Medtr2g042700.2 | small nuclear ribonucleoprotein | HC |
chr2:18621829-18626292 | 20130731
Length = 110
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
L + +D+++ V+ DGR ++G L+ FDQ N++L+ + ERV + LGLY+IRG
Sbjct: 15 LATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGDLYCD-VPLGLYVIRG 73
Query: 67 DNISVVGELD 76
+N+ ++GELD
Sbjct: 74 ENVVLIGELD 83
>Medtr2g042700.1 | small nuclear ribonucleoprotein | HC |
chr2:18621815-18626360 | 20130731
Length = 128
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
L + +D+++ V+ DGR ++G L+ FDQ N++L+ + ERV + LGLY+IRG
Sbjct: 15 LATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGDLYCD-VPLGLYVIRG 73
Query: 67 DNISVVGELD 76
+N+ ++GELD
Sbjct: 74 ENVVLIGELD 83
>Medtr7g104930.1 | small nuclear ribonucleoprotein | HC |
chr7:42544003-42542017 | 20130731
Length = 80
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 5 PGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYII 64
P L+ +D+Q+ + N R IVGTL+GFDQ N+++D + E + K + G+ +I
Sbjct: 8 PDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDI-----GMVVI 62
Query: 65 RGDNISVVGELD 76
RG+++ V L+
Sbjct: 63 RGNSVVTVEALE 74
>Medtr7g065100.1 | u6 snRNA-associated-like-Smprotein | HC |
chr7:23716677-23712044 | 20130731
Length = 99
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGV----QLIALGLY 62
L VD+ + V GR + GTLKG+DQ N++LDE+ E + + + Q +LGL
Sbjct: 11 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRSLGLI 70
Query: 63 IIRGDNISVVGELD 76
+ RG + +V D
Sbjct: 71 VCRGTAVMLVSPTD 84